Query= MSMg01no532_m04.b1 MSMg01no532_m04.b1 CHROMAT_FILE:
MSMg01no532_m04.b1 PHD_FILE: MSMg01no532_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:46 2005
(555 letters)
>mm_chr19_10799004_10799958
Length = 955
Score = 1036 bits (536), Expect = 0.0
Identities = 551/556 (99%), Gaps = 2/556 (0%)
Strand = Plus / Minus
Query: 1 accatcctctacaaggccaaggacaggcccctgggcctggggaacctcatctgtaagtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 accatcctctacaaggccaaggacaggcccctgggcctggggaacctcatctgtaagtct 696
Query: 61 ctgcagtgtggctctttcttgacacatctgtccgggacagaggcagcagggacaccagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ctgcagtgtggctctttcttgacacatctgtccgggacagaggcagcagggacaccagct 636
Query: 121 cctgcagagctgagggaccccaggcccttgccaattcgatgggaggccccgaacgggagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cctgcagagctgagggaccccaggcccttgccaattcgatgggaggccccgaacgggagc 576
Query: 181 tgtgtctcactacagcagtgcttccagaaaacaacggcccaggagggcggccaggcgctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tgtgtctcactacagcagtgcttccagaaaacaacggcccaggagggcggccaggcgctc 516
Query: 241 accgtcatctgctctggtaagctggactctgaccacgcttcatcaggctatctgttgcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 accgtcatctgctctggtaagctggactctgaccacgcttcatcaggctatctgttgcct 456
Query: 301 ttgagtaaggacatgggatcccctgatctgacattcaagctttatgagaagcctgatgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttgagtaaggacatgggatcccctgatctgacattcaagctttatgagaagcctgatgga 396
Query: 361 ggtgaaagaggagtggaggcctggagccatggcctctaaatgatagaacaagttagatga 420
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 395 ggtgaaagaggagtggaggcctggagcgatggcctctaaacaatagaacaagttagatga 336
Query: 421 ggtggtgactcaggcaacagagcaactcctgcctagcccaacggagctaccatctggaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ggtggtgactcaggcaacagagcaactcctgcctagcccaacggagctaccatctggaaa 276
Query: 481 aacagagtcagctgggatcccagcaggaagacgctaaagggaaagtgaggcctg-ggcaa 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 275 aacagagtcagctgggatcccagcaggaagacgctaaagggaaagtgaggcctgagg-aa 217
Query: 540 aggctgagggcacttg 555
||||||||||||||||
Sbjct: 216 aggctgagggcacttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_m04.g1 MSMg01no532_m04.g1 CHROMAT_FILE:
MSMg01no532_m04.g1 PHD_FILE: MSMg01no532_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:46 2005
(567 letters)
>mm_chr19_10638264_10639229
Length = 966
Score = 1007 bits (521), Expect = 0.0
Identities = 557/571 (97%), Gaps = 5/571 (0%)
Strand = Plus / Plus
Query: 1 catccctgggacctatgtaaagggtggagaggactgactaccccatctttttctgtttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 catccctgggacctatgtaaagggtggagaggactgactaccccatctttttctgtttgt 256
Query: 61 taggtttgttttggttttaagacagggtttcactatgtagccctggatattcttgaactc 120
|||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 257 taggcttgttttgattttaagacagggtttcactatgtagccctggatatccttgaactc 316
Query: 121 ----tgtagaccaggttggttttgaattcagagagatctgcctgcttctgcctcttgaat 176
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 317 actctgtagaccaggttggttttgaattcagagagatctgcctgcctctgcctcttgaat 376
Query: 177 gctggaattgaaggcaatcgttagatcttaagctgtccaaatattcaaaataagcttaag 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gctggaattgaaggcaatcgttagatcttaagctgtccaaatattcaaaataagcttaag 436
Query: 237 ctggaccatcggggggtttcaggtggttaggtaaaaaccagcttttctcagaaacttgtg 296
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctggaccatcagggggtttcaggtggttaggtaaaaaccagcttttctcagaaacttgtg 496
Query: 297 gcgctggttcccatctgcccaaaggagtcttaacccactgagccatctccccagctttcc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gcgctggttcccatctgcccaaaggagtcttaacccactgagccatctccccagctttcc 556
Query: 357 aaaactttattagatacataaacacttacagtgtctctagattttatttggactgccacc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaaactttattagatacataaacacttacagtgtctctagattttatttggactgccacc 616
Query: 417 ccttcttctactagacaagaagagaactagtcaccttaacccacccaggagggaagctac 476
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 617 ccttcttctactagacaagaagagaactaatcaccttaacccacccaggagggaagctgc 676
Query: 477 actgcagcaacatctcctaagccttgcctccaaagattaaaccaacggcctcatgtgggc 536
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 677 actgcagcagcatctcctaagcct-gcctccaaagattaaaccaacggcctcatgtgggc 735
Query: 537 ttgcgcttggcaagcactctacccccgagtt 567
|||||||||||||||||||||||| ||||||
Sbjct: 736 ttgcgcttggcaagcactctacccgcgagtt 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 966
Length adjustment: 10
Effective length of query: 557
Effective length of database: 956
Effective search space: 532492
Effective search space used: 532492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
