BAC Information

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BAC

Clone NameMSMg01-532O23
Chromosome19 (Build37)
Map Location 38,313,319 - 38,435,542
singlet/doubletdoublet
Overlap geneLgi1
Upstream geneIde, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik
Downstream geneTmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532O23.T7 (MSMg01no532_o23.b1)MSMg01-532O23.TJ (MSMg01no532_o23.g1)
ACCAG600976AG600977
length763763
length of high quality
(start - end)		510 (56 - 565)533 (86 - 618)
definitionCHROMAT_FILE: MSMg01no532_o23.b1 PHD_FILE: MSMg01no532_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:00 2005CHROMAT_FILE: MSMg01no532_o23.g1 PHD_FILE: MSMg01no532_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,313,319 - 38,313,824)(38,435,140 - 38,435,542)
sequence
GGTTTGGTGGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAGTGGGTGCTGGCAATGCCTACTTCAGAACCTCCG
CCATTGGAATCAGAACAGAACCGAGCCATTTAATAGGCACTTAGGAGTTC
TCCCGCTGCAGCCTCTGGAGTTCTGTTGACCATGATTTACTTACCCACAC
AACTCGCTGTGCAAAACGTTAAATGGAAAATCCCAGAAATGAATAATTGA
TGAGTTCTAAATTGTTCATCTTGGTGAGCAGTGTAATAAAACCTCAGCCT
ACCTGGCTGTCAGGTCCCAAAGAAACTTGGGGACAAATGGCTAGCTGAGA
TGCCTATTAGCAAACCAAAGCACATGCTGGCCTCTAGGCTCTCTCAGTAA
TGCAAGTACCAGTTACAGGAGTCCTGGCTCTTCTCATCTCTTCTCACCAC
ACCTCTACCCTAAACCTCTATAGTCCAGCGGCTTGGCTTCCCTTCCCTGC
CAGCTTCTCTTTTCTATATAACCCTAGTGTTTCAGCCCCTCTTGGTTATT
CTATCTCTCTTGATTTGTGCTTGGTTCTCTTAGTCCTATTATCCCCACTC
TTTTTTCTCTCTCACCACCCCCCCATTCTTCTCTTATGGGCTGGTTCAAT
CTGGGAACGTCCAGATGCCTCTGGCTGTACTCTCCCTCATATCTGTAAAA
AAAAGTTTCTCCTCAACCATACCTTAAGGGAAAAGCACCCTTGTATTATT
CACTGGCTCCATN

NAAAATATTCCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTGGAATCACAAA
AAAAGATCAGAAATAGTCAAACAATATACAGCAGGAAGTACTCAAATACC
CAAGCTCAAACTATAGAACTGAACTGTAGTGATAAAGACAGCTTTTGCAC
TGGAATAAAAAACAGACTGGTAGACCAGGGGGGTTGGCTAGAGGACCAAG
AAGTTACCTGACAGCAGAGGTTCTTTTTTCAAGATTCATTTATTTTATGT
GTATGAGTGTTTTGCCTGCATGTATGTATGTGTACCCTGTTGCACTTGGT
GTCTTCAGAGGTCAGAAGAGGACACTGGACCCTCCAGAACTGGAGTAATG
GCAGGTTGTGTGAGACACTACGTGGTGCTGAGAACCCAAACCAGGTCCTC
TGCAAGAATAGCAAGCACACTTAGTAACTAAGCCATGGCTCTGACATCAA
TTCCATCTAATTTTTGACAAAGGAGACAAAAAAGGGGGTTGGGGTGGGGA
ACAACCTATTTGTGGTGGTTTGAATGTTTGGCCCATGGGAAGTGACACTA
TTAGGAGATATGGTCTTGTTGAAGGAAGAGTGTCACTGTGGGTGTGGACT
TTAAGGTCCTATGCTCAACCTCTTTCTCCTCCTGGTTACCTTCAGATCAA
GATGTAGAACTCTCAGCTCCNTTATCCAGCATGTCTGCCTGGATGCTGCC
ATGCTTCCTGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_o23.b1 MSMg01no532_o23.b1 CHROMAT_FILE:
MSMg01no532_o23.b1 PHD_FILE: MSMg01no532_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:00 2005
         (510 letters)



>mm_chr19_38313115_38314024
          Length = 910

 Score =  955 bits (494), Expect = 0.0
 Identities = 503/506 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgggtgctggcaatgcctacttcagaacctccgccattggaatcagaacaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgggtgctggcaatgcctacttcagaacctccgccattggaatcagaacaga 264

                                                                       
Query: 65  accgagccatttaataggcacttaggagttctcccgctgcagcctctggagttctgttga 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 accgagccatttaataggcacttaggagttctcccgctgccgcctctggagttctgttga 324

                                                                       
Query: 125 ccatgatttacttacccacacaactcgctgtgcaaaacgttaaatggaaaatcccagaaa 184
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccacgatttacttacccacacaactcgctgtgcaaaacgttaaatggaaaatcccagaaa 384

                                                                       
Query: 185 tgaataattgatgagttctaaattgttcatcttggtgagcagtgtaataaaacctcagcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaataattgatgagttctaaattgttcatcttggtgagcagtgtaataaaacctcagcc 444

                                                                       
Query: 245 tacctggctgtcaggtcccaaagaaacttggggacaaatggctagctgagatgcctatta 304
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 tacctggctgtcaggtcccaaagaaacttggggacaaatggttagctgagatgcctatta 504

                                                                       
Query: 305 gcaaaccaaagcacatgctggcctctaggctctctcagtaatgcaagtaccagttacagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcaaaccaaagcacatgctggcctctaggctctctcagtaatgcaagtaccagttacagg 564

                                                                       
Query: 365 agtcctggctcttctcatctcttctcaccacacctctaccctaaacctctatagtccagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtcctggctcttctcatctcttctcaccacacctctaccctaaacctctatagtccagc 624

                                                                       
Query: 425 ggcttggcttcccttccctgccagcttctcttttctatataaccctagtgtttcagcccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggcttggcttcccttccctgccagcttctcttttctatataaccctagtgtttcagcccc 684

                                     
Query: 485 tcttggttattctatctctcttgatt 510
           ||||||||||||||||||||||||||
Sbjct: 685 tcttggttattctatctctcttgatt 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no532_o23.g1 MSMg01no532_o23.g1 CHROMAT_FILE:
MSMg01no532_o23.g1 PHD_FILE: MSMg01no532_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:00 2005
         (533 letters)



>mm_chr19_38435140_38436072
          Length = 933

 Score =  756 bits (391), Expect = 0.0
 Identities = 400/403 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtggaatcacaaaaaaagatcagaaatagtcaaacaatatacagcaggaagtactcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 atgtggaatcacaaaaaaagatcagaaatagtcaaacaatatacagcaggaagtactcaa 344

                                                                       
Query: 61  atacccaagctcaaactatagaactgaactgtagtgataaagacagcttttgcactggaa 120
           |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 343 atacccaagctcaaactatagaactggattgtagtgataaagacagcttttgcactggaa 284

                                                                       
Query: 121 taaaaaacagactggtagaccaggggggttggctagaggaccaagaagttacctgacagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 taaaaaacagactggtagaccaggggggttggctagaggaccaagaagttacctgacagc 224

                                                                       
Query: 181 agaggttcttttttcaagattcatttattttatgtgtatgagtgttttgcctgcatgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 agaggttcttttttcaagattcatttattttatgtgtatgagtgttttgcctgcatgtat 164

                                                                       
Query: 241 gtatgtgtaccctgttgcacttggtgtcttcagaggtcagaagaggacactggaccctcc 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gtatgtgtaccgtgttgcacttggtgtcttcagaggtcagaagaggacactggaccctcc 104

                                                                       
Query: 301 agaactggagtaatggcaggttgtgtgagacactacgtggtgctgagaacccaaaccagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 agaactggagtaatggcaggttgtgtgagacactacgtggtgctgagaacccaaaccagg 44

                                                      
Query: 361 tcctctgcaagaatagcaagcacacttagtaactaagccatgg 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  tcctctgcaagaatagcaagcacacttagtaactaagccatgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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