BAC Information

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BAC

Clone NameMSMg01-532P22
Chromosome19 (Build37)
Map Location 4,500,650 - 4,501,243
singlet/doubletsinglet
Overlap genenone
Upstream geneSaps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik
Downstream genePcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532P22.T7 (MSMg01no532_p22.b1)MSMg01-532P22.TJ (MSMg01no532_p22.g1)
ACCAG601022AG601023
length759764
length of high quality
(start - end)		677 (50 - 726)608 (79 - 686)
definitionCHROMAT_FILE: MSMg01no532_p22.b1 PHD_FILE: MSMg01no532_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:05 2005CHROMAT_FILE: MSMg01no532_p22.g1 PHD_FILE: MSMg01no532_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTGTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACAATCTGCTAAAGCCCGCAGTGCCCAGGAACTTTTTAGCT
TGTTTTGCACTGGTCGGTGGAGGAATATGAAACACAGTCTCTTTTTCTAG
CTGCTTCAACAGGTAGGCCACCGGACTCTTCTAAGGACTCAGCTTCTGTA
TTAGCACCCCTTTTGTTATCTCTTAAACACATTGATCTTCAGCCAAAAGC
TTTTTTTTGTTGCCAGGTACTATCTAAGTTTTCTAATTTTCCTGACTTTT
GTGGCCAGCATTTCATTTCTCTTATCTTTTTGTCTCACAGCACAGCTCTG
ATTCTGACTCTGATCTCTGTCTTTGTCTTAACTTTCTGTTACCTTGGTCA
GATTGTTGGGACTTTCTAGTCCCACAGAGACGAGACCCCCATCAGAGCCT
GGCAGTTAGACTCACAGGTGCTCCTTACCTTGGACAGAAGCCCCAAGTGG
GCGGATGCCTCCCTCACTGGAACTTGGAACAGACTCACTGCCAGCAGCTC
AGGGTGGTGCCACCTTCTGAGAAGAGGGAACTTTAGAGCAGAGACGGGAG
TGCAGCTCTCACAGCTGGCTGCAACCGGCACTTATCTTAAAGTGAAAGCA
GTTTTTCTGTTAACAAGAGACGGGATGGGAGGGACAGGGGAATGAGAAGC
TGCCTGGGAACCTGCAGCGCTCTTGGCCGGCTACTCGAACAGCCTCCTCT
TCTTTTTAN

NGGGCCGAGATAATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGGACTACAAGTGCCTCCAC
ACTTGCGTCACCATCGCCTTTTACAGATCAGGAAGCAGCTTACAGAGATT
AGCATCTGGCTAGAAATAGTTGGTCAGTAGCACCCTGGTCAGCCTGCCTT
TGAAGGCCTTGAGATAGAATGGGATACCCTGGACTGCCCCCTGGCTGCAG
CACTGTAGGGAGAGAAGCCCTGCATGTGCTTCTTGGCTCACTCCCATCTT
CTCTCCCTGGGCCTGACCTCATATTCTTTCCTCCCTCTCAGCTTTGGAGT
TTTCCCTCCGCGATGTTTCTCTTAATATCCGCGATGTTTCTCTTAATATC
TGCTAGTCTCAGCAGGCAACTTTGATGGAGCCCTGGAGCTGCTGAGATAG
CTTAGTGGGTGTTTTAGTCAGTGTTCTATTGCTGTGAAGAGACAACATGA
CCAACTCTCTCCATGTGGCCTTGGCTGGCCTGGAAGTCGATACATAGACC
AGCCTGGCCTCAGCCTTAGAGAGACTCCTTCCTCCATCTCCTGAGTGCTC
CACCTCCTGAGTGAGTGCTCCACCTCCTGAGTGCTGGCATTACAGGCCTG
CACCACAAGGCCTGCTTTCTGAGGAGCTGGAGAATGGTCCTCAGCTTCAT
GTGTGCTTGGCAAGCATCTTACCAACTGGGCTGTGGACCCAACTCCTGTC
TTGTTTGTTTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_p22.g1 MSMg01no532_p22.g1 CHROMAT_FILE:
MSMg01no532_p22.g1 PHD_FILE: MSMg01no532_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:05 2005
         (608 letters)



>mm_chr19_4500429_4501434
          Length = 1006

 Score = 1036 bits (536), Expect = 0.0
 Identities = 577/596 (96%), Gaps = 11/596 (1%)
 Strand = Plus / Plus

                                                                       
Query: 22  cacttgcgtcaccatcgccttttacagatcaggaagcagcttacagagattagcatctgg 81
           |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 222 cacttgcgtcaccatcgcctcttacagatcaggcagcagcttacagagattagcatctgg 281

                                                                       
Query: 82  ctagaaatagttggtcagtagcaccctggtcagcctgcctttgaaggccttgagatagaa 141
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 282 ctagaaatagttggtcagtagcaccg-ggtcagcctgcctttgaaggccttgagatagaa 340

                                                                       
Query: 142 tgggataccctggactgccccctggctgcagcactgtagggagagaagccctgcatgtgc 201
           ||||| ||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 341 tgggacaccctgggctgcccc-tggctgcagcactgtggggagagaagccctgcatgtgc 399

                                                                       
Query: 202 ttcttggctcactcccatcttctctccctgggcctgacctcatattctttcctccctctc 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttcttggctcactcccatcttctctccctgggcctgacctcatattctttcctccctctc 459

                                                                       
Query: 262 agctttggagttttccctccgcgatgtttctcttaatatccgcgatgtttctcttaatat 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agctttggagttttccctccgcgatgtttctcttaatatccgcgatgtttctcttaatat 519

                                                                       
Query: 322 ctgctagtctcagcaggca---------actttgatggagccctggagctgctgagatag 372
           |||||||||||||||||||         ||||||||||||||||||||||||||||||||
Sbjct: 520 ctgctagtctcagcaggcacccagagaaactttgatggagccctggagctgctgagatag 579

                                                                       
Query: 373 cttagtgggtgttttagtcagtgttctattgctgtgaagagacaacatgaccaactctct 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cttagtgggtgttttagtcagtgttctattgctgtgaagagacaacatgaccaactctct 639

                                                                       
Query: 433 ccatgtggccttggctggcctggaagtcgatacatagaccagcctggcctcagccttaga 492
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 640 ccatgtggccttggctggcctggaagtcaatacatagaccagcctggcctcagccttaga 699

                                                                       
Query: 493 gagactccttcctccatctcctgagtgctccacctcctgagtgagtgctccacctcctga 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gagactccttcctccatctcctgagtgctccacctcctgagtgagtgctccacctcctga 759

                                                                   
Query: 553 gtgctggcattacaggcctgcaccacaaggcctgctttctgaggagctggagaatg 608
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 760 gtgctggcattacaggcctacaccacaaggcctgctttctgaggagctggagaatg 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1006
Length adjustment: 10
Effective length of query: 598
Effective length of database: 996
Effective search space:   595608
Effective search space used:   595608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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