Query= MSMg01no535_i24.b1 MSMg01no535_i24.b1 CHROMAT_FILE:
MSMg01no535_i24.b1 PHD_FILE: MSMg01no535_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:25 2005
(648 letters)
>mm_chr19_59249121_59250169
Length = 1049
Score = 1087 bits (562), Expect = 0.0
Identities = 631/668 (94%), Gaps = 29/668 (4%)
Strand = Plus / Plus
Query: 5 gaattccacttcttatccttgcacattgtatcaaggaactaagttttgtcggtaatgaat 64
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 187 gaattccacttcttagccttgcacattgtatcaaggaactaagttttgtcagtaatgaat 246
Query: 65 taatagtttgaa-tatgaagcattcaattaaaaaa--tttacagtgatactgctcagtaa 121
|||||| || || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 247 taatagctt-aagtatgaagcattcaattaaaaaaattttacagtgatactgctcagtaa 305
Query: 122 ctctataggttcatttattttatttattttttttaaattgcaggtcagaaaaagaccctg 181
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 306 ctctataggttcatttattttattt---ttttttaa-ttgcaggtcagaaaaagaccctg 361
Query: 182 tcttttt---aaaaaagatttatttatttagtttatgtatatgagtagctgtacagatgg 238
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 362 tctttttttaaaaaaagatttatttatttattttatgtatatgagtagctgtacagatgg 421
Query: 239 ttgtgagccttcatgtggatgttgggaattgaattttagggcctctgcttgctctggtca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttgtgagccttcatgtggatgttgggaattgaattttagggcctctgcttgctctggtca 481
Query: 299 gctccactcgctc----------------ttattcttagtagtacactgttactgtcttc 342
| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 482 accccactcgctcaggcccaaagatttatttattcttagtagtacactgttactgtcttc 541
Query: 343 agacacaccagaagagggagtcagatcccattacgggtggttgtgagccaccatgtggtt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 agacacaccagaagagggagtcagatcccattacgggtggttgtgagccaccatgtggtt 601
Query: 403 gctgggatttgaactcatgaccttcagaagaccagtcagtgttcttacctgctgagccat 462
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 602 gctgggatttgaactcatgaccttcagaagagcagtcagtgttcttacctgctgagccat 661
Query: 463 ctcaccagccctctttttttttttcttt--aaatggaacaaaaccaaacaaagaagtgga 520
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 662 ctcaccagccctcttttttttttttttttaaaatggaacaaaaccaaacaaagaagtgga 721
Query: 521 acaaatatggactctgtagccaaccaggttacataattcatgtgtgaaagtcccagctcc 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 acaaatatggactctgtagccaaccaggttacataattcatgtgtgaaagtcccagctcc 781
Query: 581 atatattagacactcatccttaaacagttacattctttctctatgcctcagtgttttgtc 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 atatattagacactcatccttaaacagttacattctttctctatgcctcagtgttttgtc 841
Query: 641 tgaaaaag 648
||||||||
Sbjct: 842 tgaaaaag 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1049
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1039
Effective search space: 662882
Effective search space used: 662882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_i24.g1 MSMg01no535_i24.g1 CHROMAT_FILE:
MSMg01no535_i24.g1 PHD_FILE: MSMg01no535_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:25 2005
(577 letters)
>mm_chr19_59403636_59404611
Length = 976
Score = 1069 bits (553), Expect = 0.0
Identities = 568/573 (99%), Gaps = 1/573 (0%)
Strand = Plus / Minus
Query: 1 agttcccctaaatgcacatagcaatgctggggacgatggtgtgcttgtgctctcggggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 agttcccctaaatgcacatagcaatgctggggacgatggtgtgcttgtgctctcggggct 713
Query: 61 gggaacacgaggcgggacaggaggacctttgggtctgtccagccagggaagcatacttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gggaacacgaggcgggacaggaggacctttgggtctgtccagccagggaagcatacttag 653
Query: 121 taacttcaaggtgataggagacactccctcagaggaggtggacaatcactgaggatgaca 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 652 taacttcaaggtgataggagacactccctcagaggaggtggataatcactgaggatgaca 593
Query: 181 cccaaggattctctgacgtccacacatatgtgtacctgcacagcagaacacacaagtaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cccaaggattctctgacgtccacacatatgtgtacctgcacagcagaacacacaagtaag 533
Query: 241 tgcacacacacagagaaacctgtcatatggcatctattcattctgcttggcctaaaagta 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tgcacacacagagagaaacctgtcatatggcatctattcattctgcttggcctaaaagta 473
Query: 301 actattttcctgatttctgatctttcgtactttttgtcctatttctcaactttattgaat 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 472 actattttcctgatttctgatctttcgcactttttgtcctatttctcaactttattgaat 413
Query: 361 catattatgtgtgctttttttttttggcctagctattttgattaagtgtttatgcatatg 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 catattatgtgtgc-ttttttttttggcctagctattttgattaagtgtttatgcatatg 354
Query: 421 gctgtagttttttcattttattttctgtatactattccactgtacaagtacgccttagta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gctgtagttttttcattttattttctgtatactattccactgtacaagtacgccttagta 294
Query: 481 ggataatgatggacaattgcttagtgctgttgtgaatggttttacacttatcttttcatg 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 293 ggataatgatggacaattgcttagtgctgttgtgaatgattttacacttatcttttcatg 234
Query: 541 atgtacatttctattcgatactgcttgggctag 573
|||||||||||||||||||||||||||||||||
Sbjct: 233 atgtacatttctattcgatactgcttgggctag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 976
Length adjustment: 10
Effective length of query: 567
Effective length of database: 966
Effective search space: 547722
Effective search space used: 547722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
