Query= MSMg01no535_k07.b1 MSMg01no535_k07.b1 CHROMAT_FILE:
MSMg01no535_k07.b1 PHD_FILE: MSMg01no535_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:31 2005
(577 letters)
>mm_chr19_56175935_56176911
Length = 977
Score = 1040 bits (538), Expect = 0.0
Identities = 562/574 (97%), Gaps = 7/574 (1%)
Strand = Plus / Plus
Query: 4 ggaattctgtaggagatgtcagtttggttttttaagagtcatttaaacatcctgagtaac 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtaggagaggtcagtttggttttttaagagtcatttaaacatcctgagtaac 263
Query: 64 attgtaagtccttgaacaagccatgcctctctggcgagaccaaggagaagcacctggggt 123
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 264 attgtaagtccttgaacaagccatgcctctctggcaagaccaaggagaagcacctggggt 323
Query: 124 gtttgtgtgtttagtctggtgctgttcagctacactcgacaacagcgatgcccgtgtccc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtttgtgtgtttagtctggtgctgttcagctacactcgacaacagcgatgcccgtgtccc 383
Query: 184 gccggctctgccctccaacctccaacgtcattgtttgttgcttttaaaacttggtcttaa 243
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctggctctgccctccagcctccaacgtcattgtttgttgcttttaaaacttggtcttaa 443
Query: 244 gagtttacaggtgatcctgatgtggcttgggaattccaactctgggagagtatgagtttg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagtttacaggtgatcctgatgtggcttgggaattccaactctgggagagtatgagtttg 503
Query: 304 atgatgaagacaggccgaggcactcccgttaatgtttcctttcctgaattctccactcct 363
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atgatgaagacaggccgaggccctcccgttaatgtttcctttcctgaattctccactcct 563
Query: 364 acactgtgggttgactgacaacccttcttgccttttggctcttcttgcctcccttcagga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acactgtgggttgactgacaacccttcttgccttttggctcttcttgcctcccttcagga 623
Query: 424 taaaaagttgaagttctgatcttaagtaccttccggcatggccttgctgcaaacaatcct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taaaaagttgaagttctgatcttaagtaccttccggcatggccttgctgcaaacaa---- 679
Query: 484 caaggtctttgaggattccatagttactaattatgtctttataaaagtgtgtgtgtgtgt 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ---ggtctttgaggattccatagttactaattatgtctttataaaagtgtgtgtgtgtgt 736
Query: 544 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 577
||||||||||||||||||||||||||||||||||
Sbjct: 737 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_k07.g1 MSMg01no535_k07.g1 CHROMAT_FILE:
MSMg01no535_k07.g1 PHD_FILE: MSMg01no535_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:31 2005
(641 letters)
>mm_chr19_56383964_56385004
Length = 1041
Score = 1147 bits (593), Expect = 0.0
Identities = 629/641 (98%)
Strand = Plus / Minus
Query: 1 tccctgagttccccagggaggatcccttttctaaggatcctaattaagagtgctgtgttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tccctgagttccccagggaggatcccttttctaaggatcctaattaagagtgctgtgttg 782
Query: 61 gatgccacaaagacttcagacacacgcctacccacatccctacagtaagaggcagacacc 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 781 gatgccacaaagacttcagacacacgcctacccacatccatacagtaagaggcagacacc 722
Query: 121 ataggcacacgttagagtagagaaaactttctgcacagaagagcgcctgccactcacctt 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ataggcacaagttagagtagagaaaactttctgcacagaagagcgcctgccactcacctt 662
Query: 181 tggagcagtctggtcccgtgtaagggtatttgcaggcacagcggtagtatggatgcttct 240
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 661 tggagcagtctggtcccgtgtaagggtatttgcaggcacagcggtagtaggggtgcttct 602
Query: 241 gggtaatgaggcaatcaccatggacacatgggttgtccttgcacttgttttgtgctgtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gggtaatgaggcaatcaccatggacacatgggttgtccttgcacttgttttgtgctgtat 542
Query: 301 gagatacacagagaagtggagaatgggggtgggacattacttggggcacatttgacttag 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 541 gagatacacagagaagtggagaatgggggtgggacattacttgggacacatttgacttag 482
Query: 361 agggacacctgcttagcttaattttggaggtgggacaagctgactgtagctgtggctttg 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 481 agggacacctgcttagcttaattttggatgtgggacaagctgactgtagctgtggctttg 422
Query: 421 ttcacagtcttggaatgccaagctgctcctgggaaaggattccctctcaaccttgggtcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttcacagtcttggaatgccaagctgctcctgggaaaggattccctctcaaccttgggtcc 362
Query: 481 tggctgatttttttttcccatcctaacatacactcagatagctgttcacacctccgtgtt 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 361 tggctgatttttttttcccatcctaacatacactcagatagttgttcacacctccatgtt 302
Query: 541 cacaccttcaacaggcagttgcgatttctgcccctgattgcatgtatttgattttccagt 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 301 cacaccttcaacaggcagttgcaatttctgcccctgattgcatgtatttgattttccagt 242
Query: 601 tttggtcattctcctgtagtgtgaggagaggggcaaaccaa 641
||||| |||||||||| |||||||||||||||||||||||
Sbjct: 241 tttggccattctcctgcggtgtgaggagaggggcaaaccaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
