Query= MSMg01no536_e18.b1 MSMg01no536_e18.b1 CHROMAT_FILE:
MSMg01no536_e18.b1 PHD_FILE: MSMg01no536_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:21 2005
(602 letters)
>mm_chr19_54832499_54833500
Length = 1002
Score = 922 bits (477), Expect = 0.0
Identities = 563/603 (93%), Gaps = 21/603 (3%)
Strand = Plus / Plus
Query: 5 gaattctttctacaaccttaaattccattcatacatggtcccagttgcctgtagggaggg 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 204 gaattctttctacagccttaaattccattcatacatggtcccagttgcctgtggggaggg 263
Query: 65 agagaatttgatgtttaaacattattgacatggtgatacttctcttgtatcaacaacacg 124
|||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||| |
Sbjct: 264 agagaatttgatgtttaaacattattgacacggtgacacgtctctggtatcaacaacatg 323
Query: 125 aatgcagaaaaac-aaaaacaaacaaacaaacaaacaaacaaacggaactatttcccaga 183
||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 324 aatgcagcaaaacaaaaaacaaacaaacaaacaaacaaacaaacagaactatttcccaga 383
Query: 184 caaagctaaatgagattgttctaaatcatcatgggtgatcagttcagaggggatgcaggc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caaagctaaatgagattgttctaaatcatcatgggtgatcagttcagaggggatgcaggc 443
Query: 244 aggagggtaggatcccgtaggcatcacagagacccaaggggaaacactacttactcgttt 303
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggagggtaggatcccataggcatcacagagacccaaggggaaacactacttactcgttt 503
Query: 304 tcctcatgtttttatagtcccatctttatctataaatgatctgagtagacttctaataat 363
| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttctcat----------------ctttatctataaatgatctgagtagacttctaataat 547
Query: 364 gaagaatatgcaaaaataaatcagtaacaatagcatcgcatactcacatat-ggtggata 422
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 548 gaagaatatgcaaaaataaatcagtaacaatagcatcgcatactcacataaaggtggata 607
Query: 423 aactgagcagtgaaatagctctgctggatacggaggatgaattaaccacgaacactgagc 482
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 608 aattgagcagtgaaatagctctgctggatacggaggatgaattaaccacgaacactaagc 667
Query: 483 taggtgcacactggaatctaaaatagaaagagcactggggaaagaacattctgagctctt 542
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 668 taggtgcacactggaatctaaaatagaaagaacactggggaaagaacattctgagctctt 727
Query: 543 cttgtactcagttgtgtaaactgaac---gtgtatggagccaaaaagttggtgtatgtaa 599
|||||||||||||||||||||||||| || ||||||||||| |||||| | |||||||
Sbjct: 728 cttgtactcagttgtgtaaactgaactgggtatatggagccaacaagttgctatatgtaa 787
Query: 600 gac 602
|||
Sbjct: 788 gac 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_e18.g1 MSMg01no536_e18.g1 CHROMAT_FILE:
MSMg01no536_e18.g1 PHD_FILE: MSMg01no536_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:21 2005
(546 letters)
>mm_chr19_55027401_55028345
Length = 945
Score = 886 bits (458), Expect = 0.0
Identities = 517/546 (94%), Gaps = 17/546 (3%)
Strand = Plus / Minus
Query: 1 ttgggtagggactcacataggtagtaataattcttattttccctatcaaaaataaaccat 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 ttggctagggactcacataggtagtaataattcttattttccctatcaaaaataaaccat 827
Query: 61 aaaacaccatcatacttaaatacaatgcctcttgaggtgtgttttatcttttgtgtgtgt 120
||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 826 aaagcaccatcatacttaaatacaatgccttttgaggtgtgttttgtcttttgtgtgtg- 768
Query: 121 gtgtgtgtatatatatatatatatatatatatatatccacagttgacactgctttatgag 180
| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 767 --------------a-atatatatatatatatatattcacagttgacactgctttatgag 723
Query: 181 ggtttaagtattccataataatcaaagacacttaggcagtttttcttcctgtaagtaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ggtttaagtattccataataatcaaagacacttaggcagtttttcttcctgtaagtaatt 663
Query: 241 tcagctaagaactcaaccagacttaagtactgcatttgggcaagaaaataaggtacttta 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tcagctaagaactcaaccagagttaagtactgcatttgggcaagaaaataaggtacttta 603
Query: 301 ggatttatttgttatatgttaatatcccagggggaaatgtatttccaggcaaggaacaaa 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 602 ggatttatttgttatatgttaatatcctagggggaaatgtatttccaggcaaggaacaaa 543
Query: 361 gaaacaatggatattcgtgctaaagcagtttttcagcagcctttccccatccaaagttcc 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 542 gaaacaatggatattcgtgctaaggcagtttttcagcagcctttccccatccaaagttcc 483
Query: 421 tgatcttttcttgttgttgctaagaacaaacttggaagaaccattccttttaaaaatgta 480
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 482 tgatcttttcttg-ggttgctaagaacaagcttggaagaaccattccttttaaaaatgta 424
Query: 481 tgtgagtgcatatctcttttaatgttcagtttgaaaagccaaaactgtcaaactgagcac 540
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 423 tgtgagtgcatatctcttttaatgttcagtttgaaaagccaaaactgtcaggctgagcac 364
Query: 541 ggggac 546
||||||
Sbjct: 363 ggggac 358
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 945
Length adjustment: 10
Effective length of query: 536
Effective length of database: 935
Effective search space: 501160
Effective search space used: 501160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
