BAC Information

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BAC

Clone NameMSMg01-537C13
Chromosome19 (Build37)
Map Location 10,781,387 - 10,781,933
singlet/doubletsinglet
Overlap geneVps37c
Upstream gene6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik
Downstream geneCd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537C13.T7 (MSMg01no537_c13.b1)MSMg01-537C13.TJ (MSMg01no537_c13.g1)
ACCAG604196AG604197
length740734
length of high quality
(start - end)		496 (77 - 572)613 (83 - 695)
definitionCHROMAT_FILE: MSMg01no537_c13.b1 PHD_FILE: MSMg01no537_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:27 2005CHROMAT_FILE: MSMg01no537_c13.g1 PHD_FILE: MSMg01no537_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTATAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCATGAATATACGCATATAAGAGACACATGAGTTATC
CAAACAGATGGAAGAATTTGTAAAGCAGAAGAAATGGAAAACCATAAAGG
CCTGCAAGACCTCCCCAGAACAGCTAAAAGCATTTGCTGCTCTTTAGAAA
AACAGAGTTCACTTCCTAGTGTCCACATAGTGCGTTTCACACTCCCTGCA
ACTTCAGCTACAGATCTAAGACCCAGAGAACCCCTCCTCTCCCCGCATGA
TCGCGCACACACAAACAAACACACACACACACTCACACACACACGCACAC
ACAAACAAACACACACACACACACACACACACACACACTGGCATACACTT
TCAAATCTTTTTTTTGGAGGGGAGGTGGCGTTGAGACAGGATTTTACTAT
GTAGCCTTAGCTGTCCTGGAACTTGCTCTGTAGGCCGGCTGACTTCAAAC
TCACAGAGACTCTCCTTCTTCTGCCTCTGGGATTAAAGGCAGGCACCAAC
ATAGCTTCAAATTATATTCTTAAAAAGGCAGGCTGAAACCCCGAGGACTG
GATCTGATCTGGGGCCTATAGGAAAACTAAAGAGAAGCATGGTAGGCTGA
GTTTCCAATGCAAAGATGGAGACTCTACTCAGGGCATACAAGAAGGCATC
ACTCCTTGGATGACTGTTTCCCAGAAACACCCCACGCCTG

NNNNTTCCTATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGCACACGTCACGT
CTGCTCATCAGGAAAAAGGGCACACGTGAGTGACCATCAGAGGAGCCTAC
TGTGCTCCCGCCCCTCCCTCAAACAGATGCTTCCAGGCCAAGGACCAGCT
GCAGCTGCTCTGGGGGTACCTATGGGTATTTCTAGCTGAGTGGCCACATC
GAGCCACCTGACCTCCAGCTCACAGGAAGGTCACAGGAAATAATGACAGT
GAGGGCCGAGTCAAGCTCTGTAAAGATAGCAGGGTGGTGCTTATTCCTGT
AAGGGCCCTGTGATTGGAAGCTGAGAGGTGGGGTGCTGGCTGCAGTGGAG
AACACTATGAAACATGAGTGAGCATATCACTGTGGGGGAAGATGCCCCCC
CTCTCCCTAGTGCATGAGGGAGCTGTCTCTAGGCCCACGCTGGAACGCTA
TGAAGACTCCTGGGCCAGTTGGGTCCCTGGCTGTCCTAGTCCAAGGTGGA
CCCAGCACTCCCTATCATTCCCAGGGCTCCTAGAGGACCCAGGCCCTGGC
TTGAAACCTCAGGGCTGCCCTAGTAAAAGCCAAGGTAAAATTCACAGCAC
CAGGTGAATCCTGGCTCAAGCTCCTGCTAAGCATGAATCCTTGACAAGCA
TTTGTCAGGGTGGGTGGGATGGCTCAGTGGGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_c13.g1 MSMg01no537_c13.g1 CHROMAT_FILE:
MSMg01no537_c13.g1 PHD_FILE: MSMg01no537_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:27 2005
         (613 letters)



>mm_chr19_10780921_10781933
          Length = 1013

 Score = 1023 bits (529), Expect = 0.0
 Identities = 546/559 (97%), Gaps = 12/559 (2%)
 Strand = Plus / Minus

                                                                        
Query: 55   tcagaggagcctactgtgctcccgcccctccctcaaacagatgcttccaggccaaggacc 114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 tcagaggagcctactgtgctcccgcccctccctcaaacagatgcttccaggccaaggacc 954

                                                                        
Query: 115  agctgcagctgctctgggggtacctatgggtatttctagctgagtggccacatcgagcca 174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 953  agctgcagctgctctgggggtacctatgggtatttctagctgagtggccacatcgagtca 894

                                                                        
Query: 175  cctgacctccagctcacaggaaggtcacaggaaataatgacagtgagggccgagtcaagc 234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893  cctgacctccagctcacaggaaggtcacaggaaataatgacagtgagggccgagtcaagc 834

                                                                        
Query: 235  tctgtaaagatagcagggtggtgcttattcctgtaagggccctgtgattggaagctgaga 294
            ||||||||||||||||||||            ||||||||||||||||||||||||||||
Sbjct: 833  tctgtaaagatagcagggtg------------gtaagggccctgtgattggaagctgaga 786

                                                                        
Query: 295  ggtggggtgctggctgcagtggagaacactatgaaacatgagtgagcatatcactgtggg 354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785  ggtggggtgctggctgcagtggagaacactatgaaacatgagtgagcatatcactgtggg 726

                                                                        
Query: 355  ggaagatgccccccctctccctagtgcatgagggagctgtctctaggcccacgctggaac 414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725  ggaagatgccccccctctccctagtgcatgagggagctgtctctaggcccacgctggaac 666

                                                                        
Query: 415  gctatgaagactcctgggccagttgggtccctggctgtcctagtccaaggtggacccagc 474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665  gctatgaagactcctgggccagttgggtccctggctgtcctagtccaaggtggacccagc 606

                                                                        
Query: 475  actccctatcattcccagggctcctagaggacccaggccctggcttgaaacctcagggct 534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605  actccctatcattcccagggctcctagaggacccaggccctggcttgaaacctcagggct 546

                                                                        
Query: 535  gccctagtaaaagccaaggtaaaattcacagcaccaggtgaatcctggctcaagctcctg 594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545  gccctagtaaaagccaaggtaaaattcacagcaccaggtgaatcctggctcaagctcctg 486

                               
Query: 595  ctaagcatgaatccttgac 613
            |||||||||||||||||||
Sbjct: 485  ctaagcatgaatccttgac 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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