Query= MSMg01no537_g15.b1 MSMg01no537_g15.b1 CHROMAT_FILE:
MSMg01no537_g15.b1 PHD_FILE: MSMg01no537_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:46 2005
(566 letters)
>mm_chr19_28705692_28706657
Length = 966
Score = 996 bits (515), Expect = 0.0
Identities = 551/563 (97%), Gaps = 2/563 (0%)
Strand = Plus / Plus
Query: 5 gaattcagaccaagtgcaattaacgtgttagaataatcagacaagactctaagtacactt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaccaagtgaaattaacgtgttagaataatcagacaagactctaagtacactt 264
Query: 65 acaatgagccatgagttgaatggagcgtcgattgcaagcatgggcgtatgaaaacaagaa 124
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 265 acaatgagccatgagttgaatggagcatcgatttcaagcatgggcgtatgaaaacaagaa 324
Query: 125 aagcagaatactactaggtagcaaactcttaggacatacaaatgtcataggttgtacggt 184
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 aagcagaatactgctaggtagcaaactcttaggacatacaaatgtcataggttgtacagt 384
Query: 185 acagacatagtaagttaagcttagtttaacaaacctgagacatgcaaaaggaatagtgaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagacatagtaagttaagcttagtttaacaaacctgagacatgcaaaaggaatagtgaa 444
Query: 245 ttcaaaggcattgcttcggagacattattatctcttcatcccgaaaaatgcaaaggcagg 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 ttcaaaggcattgcttcggagacattattatctcttcatcccgaaaaatgcaaaggcaag 504
Query: 305 tacggtct-tctttgaaattaaagttcaagtaagaagcatgaaaatgagctaaaagactc 363
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacggt-tgtctttgaaattaaagttcaagtaagaagcatgaaaatgagctaaaagactc 563
Query: 364 tgatatacatgaaattactctattaaagagtactgtgaattacataaattaagtgtttga 423
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 564 tgatatacatgaaattactctattaaagagtacagtgaattacataaattaagtgtttga 623
Query: 424 ccaaattgtctagaactggagaaacatgttcttagattgaagatgaaaggtggaaaaaaa 483
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 624 ccaaattgtctagaactggagaaacatgttcttagattgaagatgaaaggggggaaaaaa 683
Query: 484 acaaccaagctcacacctagtccactgagatttgacagacaaaccccaggctcagggaaa 543
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acaaccaagctcacatctagtccactgagatttgacagacaaaccccaggctcagggaaa 743
Query: 544 actgcagttagatggataacttt 566
|||||||||||||||||||||||
Sbjct: 744 actgcagttagatggataacttt 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_g15.g1 MSMg01no537_g15.g1 CHROMAT_FILE:
MSMg01no537_g15.g1 PHD_FILE: MSMg01no537_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:47 2005
(545 letters)
>mm_chr19_28857477_28858416
Length = 940
Score = 961 bits (497), Expect = 0.0
Identities = 535/557 (96%), Gaps = 17/557 (3%)
Strand = Plus / Minus
Query: 1 catgctagcctatgaaatggacaccgggttttaaatgaaggaggagtaaatgtgaagggg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 672 catgctagcctatgaaatggacaccgggttttaaatgaaggaggaataaatgtgaagggg 613
Query: 61 aaaccagctggacgaagggaagggtgaggatatggatgcgatctgggctgcttggtggct 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aaaccagctggac-----gaagggtgaggatatggatgcgatctgggctgcttggtggct 558
Query: 121 ccagtctgcactctctaggcaattctcagccttcaagatacccaccacacctttcgcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccagtctgcactctctaggcaattctcagccttcaagatacccaccacacctttcgcagg 498
Query: 181 ctgggccataaattcttgtcacgtttctcggctgtccacaggggtcaggttgcgaaaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctgggccataaattcttgtcacgtttctcggctgtccacaggggtcaggttgcgaaaact 438
Query: 241 gttcttacctctggctggtctttggtaaggtctggtcatggatgcttattaaacctttgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gttcttacctctggctggtctttggtaaggtctggtcatggatgcttattaaacctttgg 378
Query: 301 atggtgttttagaatccagctgggaatgctggttctggccctgggtggtccttcctattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atggtgttttagaatccagctgggaatgctggttctggccctgggtggtccttcctattc 318
Query: 361 tgtctgtggttctctgcagactctgtctccaatcagggttccatcttgttgatctggaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgtctgtggttctctgcagactctgtctccaatcagggttccatcttgttgatctggaca 258
Query: 421 gctcttattcaaagtttctccttcacaatctaggagcatttggctgactgggtttca--- 477
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 257 gctcttattcaaagtttctccttcacagtctaggagcatttggctgactgggtttcagtg 198
Query: 478 ---a------taacacttgctctgagattccagagaggttcacggacaatctgctgctgc 528
| ||||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct: 197 gagagccctctaacacttgctctgagattccagagaggtccatggacaatctgttgctgc 138
Query: 529 tgactcaccgtctgagt 545
|||||||||||||||||
Sbjct: 137 tgactcaccgtctgagt 121
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 940
Length adjustment: 10
Effective length of query: 535
Effective length of database: 930
Effective search space: 497550
Effective search space used: 497550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
