Query= MSMg01no537_i09.b1 MSMg01no537_i09.b1 CHROMAT_FILE:
MSMg01no537_i09.b1 PHD_FILE: MSMg01no537_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:54 2005
(454 letters)
>mm_chr19_51197702_51198553
Length = 852
Score = 806 bits (417), Expect = 0.0
Identities = 445/455 (97%), Gaps = 3/455 (0%)
Strand = Plus / Plus
Query: 1 ccaaataattttctcatttcttgcctattccagaaggtgtattataagccttttccccgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ccaaataattttctcatttcttgcctattccagaaggtgtattataagccttttccccgt 259
Query: 61 attactgtcccaaattttcca-ttttctacttttgtaagtacctgaatcaccagtcaaaa 119
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 260 attactgtcccaaattttccatttttctacctttgtaagtacctgaatcaccagtcaaaa 319
Query: 120 tatgcattctatgagactataatccatgtctccaggcttatatatttaccaaaataaaat 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tatgctttctatgagactataatccatgtctccaggcttatatatttaccaaaataaaat 379
Query: 180 ttaaaaaaatatttaatttgagaattttccaaatgggaggatttttccccttgctgttgt 239
| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 380 taaaaaaaatatttaatttgagaattttctaaatgggaagatttttccccttgctgttgt 439
Query: 240 ctttaaaggctatagtcatgactctatattatatccaccgtttgtccccactcttcacca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 440 ctttaaaggctatagtcatgactctatattatatccaccgtttgtccccactcttcatca 499
Query: 300 actaatgtgctaatctatctatgaagttcattacttttctctgtatcagattctggtagt 359
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 500 actaatgtgctaatctatctatgaagttcattacttttctct--atcagattctggtagt 557
Query: 360 agttagcagtgaagatatatgatagcaaaagtggcaagtgacaatttagctactgtgtcc 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 558 agttagcagtgaagatatatgatagcagaagtggcaagtgacaatttagctactgtgtcc 617
Query: 420 aaacaccttgcatgtgccctactgctgtctagtct 454
|||||||||||||||||||||||||||||||||||
Sbjct: 618 aaacaccttgcatgtgccctactgctgtctagtct 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 852
Length adjustment: 10
Effective length of query: 444
Effective length of database: 842
Effective search space: 373848
Effective search space used: 373848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_i09.g1 MSMg01no537_i09.g1 CHROMAT_FILE:
MSMg01no537_i09.g1 PHD_FILE: MSMg01no537_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:54 2005
(548 letters)
>mm_chr19_51364369_51365316
Length = 948
Score = 1036 bits (536), Expect = 0.0
Identities = 545/548 (99%)
Strand = Plus / Minus
Query: 1 acacctaaaggagagtggcaacatccaatgcactcatcacaaagaagagggggtaccagg 60
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 917 acacctaaaggagagtggcaacatccaatgcactcagcacaaaggagagggggtaccagg 858
Query: 61 catctagacctgaattaaagggagattatgagatgaacaccatcacttattgttctcctt 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 catctagaactgaattaaagggagattatgagatgaacaccatcacttattgttctcctt 798
Query: 121 gactagagatactatgaacctgtttgtgctcttgcatacacagctgaacctactcttgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gactagagatactatgaacctgtttgtgctcttgcatacacagctgaacctactcttgct 738
Query: 181 accaggcctttctcactataatggtaattgtacttgaattgtgttcacacgtccttaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 accaggcctttctcactataatggtaattgtacttgaattgtgttcacacgtccttaagt 678
Query: 241 ttattttataagttattaacaaaaatataactactaccataggtaaatttattggataga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttattttataagttattaacaaaaatataactactaccataggtaaatttattggataga 618
Query: 301 attaagatttgtggtcattgttaaaaataatcacaagttgtttgtgaagtaaaatctttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 attaagatttgtggtcattgttaaaaataatcacaagttgtttgtgaagtaaaatctttc 558
Query: 361 tggagaggtaatagtagtaaaactgttgataaacactgccatatcatatatcttccattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tggagaggtaatagtagtaaaactgttgataaacactgccatatcatatatcttccattt 498
Query: 421 ccaagtttattcacctgagcattttaaaacattgcaaactttaaaaatcaggtgaattaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ccaagtttattcacctgagcattttaaaacattgcaaactttaaaaatcaggtgaattaa 438
Query: 481 tatcaaaccccagtaacccacagaccacatggagcatagaaggaagaaagaccaaggtat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tatcaaaccccagtaacccacagaccacatggagcatagaaggaagaaagaccaaggtat 378
Query: 541 tgaagctt 548
||||||||
Sbjct: 377 tgaagctt 370
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
