Query= MSMg01no538_a12.b1 MSMg01no538_a12.b1 CHROMAT_FILE:
MSMg01no538_a12.b1 PHD_FILE: MSMg01no538_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:35 2005
(658 letters)
>mm_chr19_14931464_14932520
Length = 1057
Score = 1234 bits (638), Expect = 0.0
Identities = 650/654 (99%), Gaps = 1/654 (0%)
Strand = Plus / Minus
Query: 5 gaattcagcatagaatactatgacagtaaataaaacccatgtaagtggtggcagcagaac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gaattcagcatagaatactatgacagtaaataaaacccatgtaagtggtggcagcagaac 798
Query: 65 tttataagcaaggaaagcaacccaaagtatattctagaaaaatctaagaactgttcatga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tttataagcaaggaaagcaacccaaagtatattctagaaaaatctaagaactgttcatga 738
Query: 125 tgtaggaaattttaggccactcttatatcaggtgaccaagattccacttcttcttagcca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 737 tgtaggaaattttaggccactcttatatcaggtgaccaagattccacttcttcttaggca 678
Query: 185 gagatattcttcttaggcaaaaataccactggtcccctggctaaattgctacccagttag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gagatattcttcttaggcaaaaataccactggtcccctggctaaattgctacccagttag 618
Query: 245 acaattctgatgtgttgaaataaaatacaattttgagctcatgaagaaactctatgattt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 acaattctgatgtgttgaaataaaatacaattttgagctcatgaagaaactctatgattt 558
Query: 305 attaattcttaaacccactcatgcaagagtgggtgaaaggtggcagggctaggaatctga 364
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 557 attaattcttaaacccactca-gcaagagtgggtgaaaggtggcagggctaggaatctga 499
Query: 365 ttgatatccatagagcaggtcaccttgaccagctgggtattgagagtctcctctggagtg 424
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 498 ttgatatccatagagcaggtcaccttgaccagctgggtgttgagagtctcctctggagtg 439
Query: 425 attgtcctttgtgagtcatagtacaaataaatcctcaaacattgtgtttattctgacaag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 attgtcctttgtgagtcatagtacaaataaatcctcaaacattgtgtttattctgacaag 379
Query: 485 tccttccaaacctcttcctcagacttctctgatccttctaaatcattgatcatcttgcca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tccttccaaacctcttcctcagacttctctgatccttctaaatcattgatcatcttgcca 319
Query: 545 aactattagacaatatttacaaatcactagagatctatattttttgccatgtcttcttca 604
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 318 aactattagacaatatttacaaatcactagcgatctatattttttgccatgtcttcttca 259
Query: 605 gaaacagtaaatggctataagataaactgtttcatctcagaattcccattgttt 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gaaacagtaaatggctataagataaactgtttcatctcagaattcccattgttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1057
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1047
Effective search space: 678456
Effective search space used: 678456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_a12.g1 MSMg01no538_a12.g1 CHROMAT_FILE:
MSMg01no538_a12.g1 PHD_FILE: MSMg01no538_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:35 2005
(643 letters)
>mm_chr19_14770984_14772025
Length = 1042
Score = 652 bits (337), Expect = 0.0
Identities = 361/369 (97%), Gaps = 1/369 (0%)
Strand = Plus / Plus
Query: 1 atcatatagaccaggttggttttgaattcctagagctcttcctgcttctgcctccaaagt 60
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 atcatgtagaccaggttggttttgaactcctagagctcttcctgcttctgcctccaaagt 260
Query: 61 tctggattaaagatgtacaccatcacgcctggttaagattgtgatttttataatctatgt 120
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 261 tctggattaaagatgtacaccatcatgcctagttaagattgtgatttttataatctatgt 320
Query: 121 gcagtgttatttatacaagaaaaaaaataaggccccgatctctcctgtaaaataaatcga 180
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 321 tcagtgttatttatacaag-aaaaaaataaggccctgatctctcctgtaaaataaattga 379
Query: 181 ccatgaatatattttgagtagaattattttttctttgaattgactgcttagttaaaaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccatgaatatattttgagtagaattattttttctttgaattgactgcttagttaaaaaca 439
Query: 241 accaaattaattcataaagcagagtactcacattttataaaaatatttttgagtttacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 accaaattaattcataaagcagagtactcacattttataaaaatatttttgagtttacca 499
Query: 301 atggatgtaagaaaaggaatataaataggatgctgggaattaggaatcagagaacatttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atggatgtaagaaaaggaatataaataggatgctgggaattaggaatcagagaacatttt 559
Query: 361 atatccaat 369
|||||||||
Sbjct: 560 atatccaat 568
Score = 112 bits (58), Expect = 7e-29
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 375 ggccatgcctcttaatagtgccattttttataagccaagcattcaaacacatgagtctat 434
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 977 ggccatacctcttaatagtgccattttttacaagccaagcattcaaacacatgagtctat 1036
Query: 435 gagggg 440
||||||
Sbjct: 1037 gagggg 1042
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 643
Length of database: 1042
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1032
Effective search space: 653256
Effective search space used: 653256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
