MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-539C13
Chromosome	19 (Build37)
Map Location	23,345,230 - 23,345,430
singlet/doublet	singlet
Overlap gene	Smc5
Upstream gene	Trpm3, EG433230, Klf9
Downstream gene	Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2, Fxn
Link	Open Mouse BAC browser

Click to get alignment info.

name	Trpm3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226025 MGI:2443101
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 9 mRNAs

name	EG433230 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433230 MGI:3648670
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 359 ESTs, 9 Proteins

name	Klf9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16601 MGI:1333856
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Smc5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226026 MGI:2385088
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mamdc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71738 MGI:1918988
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700028P14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67483 MGI:1914733
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC670565 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:670565
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 533 ESTs, 1 Protein

name	LOC226030 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:226030
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 Proteins pseudo : _no_value

name	EG625193 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:625193 MGI:3646907
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 295 ESTs, 3 Proteins

name	Ptar1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72351 MGI:1921875
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 29 ESTs

name	Apba1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319924 MGI:1860297
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm967 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381217 MGI:2685813
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 41 ESTs, 3 Proteins

name	1700021P04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75521 MGI:1922771
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Tjp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21873 MGI:1341872
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fxn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14297 MGI:1096879
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trpm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:95147344 GeneID:226025 MGI:2443101
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transient receptor potential cation channel, subfamily M, member 3 transcript_id : NM_001035240.2

name	Trpm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:95147345 GeneID:226025 MGI:2443101
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transient receptor potential cation channel, subfamily M, member 3 transcript_id : NM_001035241.2

name	Trpm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:95147343 GeneID:226025 MGI:2443101
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transient receptor potential cation channel, subfamily M, member 3 transcript_id : NM_001035239.2

name	Trpm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78214531 GeneID:226025 MGI:2443101
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transient receptor potential cation channel, subfamily M, member 3 transcript_id : NM_001035242.1

name	Trpm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:95147347 GeneID:226025 MGI:2443101
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transient receptor potential cation channel, subfamily M, member 3 transcript_id : NM_001035243.2

name	EG433230 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94405840 GeneID:433230 MGI:3648670
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 359 ESTs, 9 Proteins product : predicted gene, EG433230, transcript variant 1 transcript_id : XM_484785.3

name	Trpm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892589 GeneID:226025 MGI:2443101
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transient receptor potential cation channel, subfamily M, member 3 transcript_id : NM_177341.4

name	Trpm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78214535 GeneID:226025 MGI:2443101
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transient receptor potential cation channel, subfamily M, member 3 transcript_id : NM_001035244.1

name	Trpm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78214537 GeneID:226025 MGI:2443101
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transient receptor potential cation channel, subfamily M, member 3 transcript_id : NM_001035245.1

name	Trpm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78214539 GeneID:226025 MGI:2443101
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transient receptor potential cation channel, subfamily M, member 3 transcript_id : NM_001035246.1

name	Klf9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802482 GeneID:16601 MGI:1333856
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Kruppel-like factor 9 transcript_id : NM_010638.3

name	Smc5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24497432 GeneID:226026 MGI:2385088
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : structural maintenance of chromosomes 5 transcript_id : NM_153808.1

name	Mamdc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802522 GeneID:71738 MGI:1918988
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MAM domain containing 2 transcript_id : NM_174857.2

name	1700028P14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361429 GeneID:67483 MGI:1914733
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700028P14 gene transcript_id : NM_026188.2

name	LOC670565 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270445 GeneID:670565
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 533 ESTs, 1 Protein product : similar to ribosomal protein S7 transcript_id : XM_001478207.1

name	EG625193 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270447 GeneID:625193 MGI:3646907
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 282 ESTs, 3 Proteins product : predicted gene, EG625193 transcript_id : XM_001478220.1

name	EG625193 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270449 GeneID:625193 MGI:3646907
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 140 ESTs, 1 Protein product : predicted gene, EG625193, transcript variant 2 transcript_id : XM_899946.3

name	Ptar1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270405 GeneID:72351 MGI:1921875
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 29 ESTs product : protein prenyltransferase alpha subunit repeat containing 1, transcript variant 1 transcript_id : XM_129160.9

name	Apba1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:79749979 GeneID:319924 MGI:1860297
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amyloid beta (A4) precursor protein binding, family A, member 1 transcript_id : NM_177034.3

name	Gm967 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270406 GeneID:381217 MGI:2685813
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 41 ESTs, 3 Proteins product : gene model 967, (NCBI) transcript_id : XM_355152.6

name	1700021P04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94405922 GeneID:75521 MGI:1922771
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 1700021P04 gene transcript_id : XM_992060.1

name	Tjp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353787 GeneID:21873 MGI:1341872
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tight junction protein 2 transcript_id : NM_011597.2

name	Fxn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892935 GeneID:14297 MGI:1096879
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : frataxin transcript_id : NM_008044.2

name	Trpm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78214528 CCDS:CCDS29703.1 GeneID:226025 MGI:2443101
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005261 - cation channel activity [Evidence ISS]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence ISS]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; melastatin 2 product : transient receptor potential cation channel, subfamily M, member 3 isoform b protein_id : NP_001030317.1

name	Trpm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78214530 CCDS:CCDS29704.1 GeneID:226025 MGI:2443101
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005261 - cation channel activity [Evidence ISS]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence ISS]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform c is encoded by transcript variant 3; melastatin 2 product : transient receptor potential cation channel, subfamily M, member 3 isoform c protein_id : NP_001030318.1

name	Trpm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78214526 CCDS:CCDS29702.1 GeneID:226025 MGI:2443101
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005261 - cation channel activity [Evidence ISS]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence ISS]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; melastatin 2 product : transient receptor potential cation channel, subfamily M, member 3 isoform a protein_id : NP_001030316.1

name	Trpm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78214532 GeneID:226025 MGI:2443101
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005261 - cation channel activity [Evidence ISS]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence ISS]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform d is encoded by transcript variant 4; melastatin 2 product : transient receptor potential cation channel, subfamily M, member 3 isoform d protein_id : NP_001030319.1

name	Trpm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78214534 GeneID:226025 MGI:2443101
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005261 - cation channel activity [Evidence ISS]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence ISS]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform e is encoded by transcript variant 5; melastatin 2 product : transient receptor potential cation channel, subfamily M, member 3 isoform e protein_id : NP_001030320.1

name	EG433230 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51771469 GeneID:433230 MGI:3648670
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_484785.1

name	Trpm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54144620 CCDS:CCDS29705.1 GeneID:226025 MGI:2443101
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005261 - cation channel activity [Evidence ISS]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence ISS]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isofrom f is encoded by transcript variant 6; melastatin 2 product : transient receptor potential cation channel, subfamily M, member 3 isofrom f protein_id : NP_796315.2

name	Trpm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78214536 GeneID:226025 MGI:2443101
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005261 - cation channel activity [Evidence ISS]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence ISS]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform g is encoded by transcript variant 7; melastatin 2 product : transient receptor potential cation channel, subfamily M, member 3 isoform g protein_id : NP_001030321.1

name	Trpm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78214538 GeneID:226025 MGI:2443101
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005261 - cation channel activity [Evidence ISS]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence ISS]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform h is encoded by transcript variant 8; melastatin 2 product : transient receptor potential cation channel, subfamily M, member 3 isoform h protein_id : NP_001030322.1

name	Trpm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78214540 GeneID:226025 MGI:2443101
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005261 - cation channel activity [Evidence ISS]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence ISS]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform i is encoded by transcript variant 9; melastatin 2 product : transient receptor potential cation channel, subfamily M, member 3 isoform i protein_id : NP_001030323.1

name	Klf9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542239 CCDS:CCDS29706.1 GeneID:16601 MGI:1333856
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence ISS] [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007566 - embryo implantation [Evidence IDA]; GO:0050847 - progesterone receptor signaling pathway [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : basic transcription element binding protein 1 product : Kruppel-like factor 9 protein_id : NP_034768.2

name	Smc5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24497433 GeneID:226026 MGI:2385088
definition	GO_component : GO:0005694 - chromosome [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA] GO_process : GO:0051276 - chromosome organization and biogenesis [Evidence IEA] codon_start : 1 product : SMC5 structural maintenance of chromosomes 5-like 1 protein_id : NP_722503.1

name	Mamdc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33469047 CCDS:CCDS29707.1 GeneID:71738 MGI:1918988
definition	codon_start : 1 product : MAM domain containing 2 protein_id : NP_777282.1

name	1700028P14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385700 CCDS:CCDS29708.1 GeneID:67483 MGI:1914733
definition	codon_start : 1 product : hypothetical protein LOC67483 protein_id : NP_080464.1

name	LOC670565 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270446 GeneID:670565
definition	codon_start : 1 product : similar to ribosomal protein S7 protein_id : XP_001478257.1

name	EG625193 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270448 GeneID:625193 MGI:3646907
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478270.1

name	EG625193 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82998332 GeneID:625193 MGI:3646907
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_905039.1

name	Ptar1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82998336 GeneID:72351 MGI:1921875
definition	codon_start : 1 product : protein prenyltransferase alpha subunit repeat containing 1 isoform 1 protein_id : XP_129160.6

name	Apba1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:79749980 GeneID:319924 MGI:1860297
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006886 - intracellular protein transport [Evidence IPI]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : amyloid beta (A4) precursor protein binding, family A, member 1 protein_id : NP_796008.2

name	Gm967 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270407 GeneID:381217 MGI:2685813
definition	codon_start : 1 product : similar to chromosome 9 open reading frame 61 protein_id : XP_355152.6

name	1700021P04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94405923 GeneID:75521 MGI:1922771
definition	codon_start : 1 product : hypothetical protein LOC75521 protein_id : XP_997154.1

name	Tjp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7549795 GeneID:21873 MGI:1341872
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] codon_start : 1 exception : unclassified translation discrepancy product : tight junction protein 2 protein_id : NP_035727.1

name	Fxn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679863 CCDS:CCDS29711.1 GeneID:14297 MGI:1096879
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_process : GO:0006879 - iron ion homeostasis [Evidence IEA] codon_start : 1 note : Friedreich ataxia product : frataxin protein_id : NP_032070.1

name	LOC226030 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:226030
definition	number : 1 pseudo : _no_value

clone name	MSMg01-270E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-216L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-084E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525A07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-158M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-451C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-206G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270N04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224J03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276N05
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-539C13.T7 (MSMg01no539_c13.b1)	MSMg01-539C13.TJ (MSMg01no539_c13.g1)
ACC	AG605717	AG605718
length	1,350	822
length of high quality (start - end)	---	249 (78 - 326)
definition	CHROMAT_FILE: MSMg01no539_c13.b1 PHD_FILE: MSMg01no539_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:00 2005	CHROMAT_FILE: MSMg01no539_c13.g1 PHD_FILE: MSMg01no539_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:00 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	AAATAACTATCTTTAACAAGCAAACCCGTCTTCTACGCCAGTGACCCTCC CCCCCATCATTAACGCACTATCGTCATATCCATCCTCTCAGCCTAAGACA GGGCGGAGGGGACGTAGGTGGTTTGGTGAGAAGAGCAGGCACTGTTGTGA TATCTCCATACCCCACCGCGCTATTATATCCGGCGGCTTGTTCGCTTGTA ATATACGGAGTGAGTAGGGGTGCGCGCCGCCGAGCCGACCCATAAAAAAC ACATATAAACTCAATACATCACACCNACTCACATTTTATACACCACATTA TGTCATTGTCTATAGATCACACACACCAATACCAGCTTAATTACCTCAAT AATACAACTTCATGCTTAACCATTCATCCATCCTATTAACAAAGTACTCG AGGCTAACGCTGAAAATCGGCACGACGACTAGTGTCATGCAAAAGGATAG ACAAAGGGGATAGAGAGCTCGAAGACGCACACCGAACGAATAATTATAAA ACACCCTATGTGTGTATCCACACACAACATTTATCTCTATTCATCAATAA TAGGTCCTCAACATGCTGCGAGCGATACGATTCAAATTAATACGACCATG TATGAGGGGTGGTGGATAGATAAAGTGGGCATATCGACTATGATAATATT AAACATACATCCGTTACTTCGTTATGAGGTTGATGAGACACATCCCACAA GGTACTAATTATGGTTAATAATAGCGAACTGTGTCTCGAGATACATATAT TTTCTAGATTGATTCTATGCGAGACAGGGCGCGATACATGTAAAACATAA TATATAAAGNGATATGTTCTGCGTGGACTGTCCGCGACTCTGGTCATACA ATGCACTANTACAGATATCACACGCCATGTTTCACTGACGCAGAGGACCG AGTGACGTTACGGATAAGACAATGCGACACAGTGGTTGAGCAATCCTGCA GCTGCGGGTAACACCTGTCTGTGCGCACTACAGACTTGAGAATTACATAT AGATGAGTACACAGCGAAAGAACAAGTAATCCGCGACCGCCGCCNTGCAC AGATCGCGAGACGAATTCTCTCACGTCTCCTTCAGCGTGTAGCTTTACCA TCTCATGTGGCGACCTTATTTGAGATTACCACGAACGACTATAAATAGCC GAGTATGTCGACGACAATCAGGACACGGCGCCGCGATGTCACGTCTCTAC CGGCGCGGAGCTTATGTGCGCGGTAGAGGTGATGTGCGATTTGCGTCGCA AGTCGATGGTCCTCTACTGTACGTTCCTGTATGAGAATTTCAGTATACAC TCGTACTCGGTACAAATATCATATAAATTTTCTACCCGACCGCGCGCGCG	CCCAATGGAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXAGATGGACTAGAGATAGGACAGG GGGTTGCTGTGAGCAAATTAAGTCAGATAGGTTGAGAATAGAGGGAGAGT TATAAGCTAAAGGAAGTACAGATTAGTCAGGAAACTAGAAGAAATATATA ATAGAATTTAGAGTTCTGAGTAGAGATAGAAAAAGGAGATAGGAAAAAGT TGAAACTAAGGCTGAGTTACAAAGCCTTATAATGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTCCTTCTTTTCTTTTCTCT CTATTCGCTTTCTTTTCCCTCTCTTTTTCTTCTTTTTCTACTTTTTTTAT TTTTTGTTATTTTTTTTCCCCCCGGGGGAAAATAAATAATAATTTACATC TTATTTACCCTTTCTATTTTTCCCTCTTATTGCCCTCACCCTTTCTATTT TCTTGCCTGTGTTCCCTTCTTTTACTTTTCATTTTGCACTTGGTCTCCCT TCCTCCTTGTGCCTACCCGTTTTTTTCGTGCCTCTTTTTTTCTTTATTCC TTTCTCTCCTTTTTCTCTTCCATTCTCGCCTTTTTTCCTCCCTCCGCTTA CTTTTGTTTCTTTAGCACCCTGTTCTTCTTTTCTCTGCTTCATATATTCC TTCCTTTGTTTTCTCCTTTTTTCCTTGACTAGGCTTCCTTCGCCCTTCGT TCCTTTTTTTCCTTTCTTTGCGTCTCTTTTCACCTCCACTTTACTCATTT TATCCCGTTTCTTTTTTCATTC
quality values	Open. Hide. 6 6 6 6 6 8 9 8 8 7 7 8 8 8 8 8 8 8 8 8 9 8 8 8 10 10 8 10 7 7 8 8 8 8 8 8 10 10 8 9 9 9 9 9 8 8 6 6 6 6 10 10 10 10 9 9 8 8 8 8 8 8 10 13 8 8 10 6 6 6 6 8 8 9 6 8 8 8 8 6 8 8 8 12 7 6 8 6 6 6 6 8 11 11 8 8 8 8 8 6 6 8 8 8 8 8 8 8 11 15 15 10 10 10 8 10 10 10 10 10 8 8 8 6 6 6 6 8 8 9 8 8 8 8 6 6 6 6 8 8 9 10 12 11 12 12 9 9 8 8 8 8 8 8 8 12 10 10 10 11 10 13 11 10 10 10 10 10 10 10 13 16 11 13 13 8 10 6 6 8 8 9 9 10 10 11 11 11 11 12 10 10 8 8 8 8 7 6 6 6 8 6 6 6 6 8 6 8 8 8 9 9 9 9 8 8 10 10 10 9 9 9 9 8 8 6 6 8 7 8 8 8 10 10 10 15 13 10 10 10 10 10 10 10 10 9 10 10 8 8 8 9 8 10 8 8 8 8 8 8 8 8 8 8 8 6 6 8 6 8 8 8 8 8 3 0 3 6 6 6 12 10 10 11 8 10 8 8 8 10 8 9 10 13 13 8 10 10 10 10 9 7 7 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 7 9 7 7 8 6 6 8 8 8 8 8 8 8 8 8 8 8 10 12 12 6 6 6 8 8 8 8 8 10 8 8 6 6 8 6 7 7 8 8 10 6 6 6 6 6 8 6 6 7 6 8 8 9 9 6 6 8 8 8 10 12 8 8 8 8 8 10 12 12 10 10 10 10 9 8 8 8 8 8 6 8 8 6 8 10 8 8 6 6 6 6 8 8 9 9 9 9 8 9 9 8 8 8 8 8 8 10 10 12 12 12 12 12 12 12 12 12 18 15 13 15 11 9 9 9 8 8 10 10 12 11 18 11 10 10 9 8 11 12 13 10 8 6 6 6 6 6 8 6 6 8 8 6 6 6 8 8 8 8 11 11 8 8 8 6 6 6 6 8 8 8 8 6 6 6 6 6 8 8 8 8 8 8 8 8 6 6 6 6 8 6 6 6 8 8 8 8 6 6 6 6 8 6 8 7 6 7 6 8 8 8 6 6 6 6 10 13 10 8 8 6 6 8 8 8 9 8 8 6 6 8 6 8 8 8 11 11 10 9 9 8 10 8 8 8 8 8 8 6 6 6 6 8 6 8 8 8 8 8 8 11 8 8 6 6 6 7 7 7 10 7 7 7 8 8 8 8 8 8 10 8 9 8 8 8 9 10 9 9 8 8 9 9 8 8 9 9 9 10 8 8 6 6 6 6 8 8 8 8 8 8 8 8 8 10 11 11 10 10 8 8 10 10 6 6 6 8 9 8 8 7 9 8 8 8 8 8 8 12 12 10 10 9 8 8 8 8 7 6 7 7 10 10 6 6 6 6 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 9 8 8 8 11 11 9 8 8 8 8 8 8 8 8 7 7 8 8 8 8 10 11 10 9 9 9 9 10 8 8 6 6 6 6 6 7 8 7 8 8 10 8 8 8 9 9 9 8 8 6 6 6 6 6 7 8 9 8 6 8 6 6 8 8 8 8 10 8 8 8 8 10 9 9 10 10 8 8 8 8 9 8 6 6 8 6 6 10 9 8 8 6 6 8 8 13 16 6 6 6 7 10 8 12 6 6 6 6 6 6 8 3 0 3 11 12 12 15 13 13 8 8 8 8 10 8 8 8 8 10 11 8 8 6 6 8 8 9 10 8 8 10 8 8 8 6 6 8 10 10 10 8 8 8 10 8 8 8 8 8 3 0 3 7 8 8 6 6 6 6 6 8 8 8 8 10 10 10 9 8 8 6 8 8 8 8 8 8 8 8 11 11 8 8 8 8 8 8 8 9 9 9 13 9 8 8 10 8 8 8 8 8 6 6 6 6 6 8 8 6 6 6 6 8 8 8 8 8 8 8 8 8 8 8 9 8 8 6 6 8 6 6 8 6 6 6 6 6 6 8 10 10 8 8 8 8 8 8 8 8 8 8 8 6 7 10 8 8 8 8 8 10 8 8 8 8 8 8 8 10 12 8 8 8 8 8 8 9 10 13 11 8 10 11 8 8 10 10 8 8 6 6 6 6 6 6 9 9 12 12 9 9 9 9 9 8 7 7 8 8 8 8 8 8 6 6 6 6 6 8 8 8 6 6 6 6 8 7 6 6 8 8 8 8 8 8 3 0 3 8 6 6 8 6 10 10 10 9 8 8 8 7 7 7 7 7 8 8 8 6 6 8 8 6 6 8 6 6 6 8 8 8 8 8 8 8 8 8 10 10 11 12 8 8 6 8 8 11 11 10 10 11 15 13 13 8 8 6 6 6 6 6 6 6 8 6 6 6 6 6 6 6 7 6 8 8 6 8 8 6 6 6 6 8 6 6 6 8 8 6 6 6 6 6 10 11 10 10 10 8 6 8 6 6 8 6 8 8 8 8 6 6 6 8 8 8 7 7 6 6 6 6 6 6 8 8 6 6 8 6 9 9 9 9 11 9 10 10 8 8 7 6 6 6 6 8 13 13 12 10 8 6 6 6 6 6 6 6 6 8 8 8 8 8 8 8 8 8 7 7 9 11 9 6 6 7 7 6 6 6 6 8 10 10 10 13 13 9 8 8 6 6 6 8 8 8 8 8 8 9 10 10 9 9 8 8 8 10 13 9 9 9 9 9 9 10 8 8 8 8 6 6 6 8 10 12 12 6 8 6 7 8 8 8 8 6 8 8 8 6 6 6 6 9 10 8 8 8 6 8 6 6 8 8 9 8 8 8 8 8 6 8 6 8 8 8 8 8 8 8 10 12 7 7 6 6 8 6 6 6 6 10 8 8 8 8 8 8 8 8 10 6 6 6 6 6 6 6 6 6 6 8 6	Open. Hide. 9 9 12 13 16 15 18 13 13 12 10 16 22 16 9 9 11 11 11 14 27 27 20 20 20 28 28 39 29 23 9 9 11 11 11 9 9 10 10 9 9 19 19 30 25 30 28 30 30 37 32 33 30 28 28 33 37 37 25 20 9 12 10 10 10 10 15 19 21 34 34 33 36 36 36 31 20 18 31 32 53 43 47 48 40 40 39 43 48 43 43 54 54 54 54 54 54 54 48 48 68 68 68 59 59 57 57 57 57 57 57 50 47 47 54 57 57 68 68 57 57 57 44 43 41 57 57 57 57 68 68 68 57 57 59 50 50 50 50 48 48 59 59 59 68 68 68 68 68 50 50 50 50 50 50 50 50 48 57 57 68 68 68 68 68 57 57 52 52 38 50 50 50 50 43 44 33 35 35 47 47 57 57 52 52 52 57 57 59 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 57 57 59 59 59 59 59 52 52 52 57 57 57 57 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 50 51 50 50 50 50 68 68 68 68 68 68 68 68 68 68 57 57 54 57 57 57 57 68 68 68 68 68 68 68 57 57 46 43 43 57 32 41 33 33 42 44 44 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 68 68 68 59 59 57 57 57 59 59 59 59 59 59 59 57 57 57 57 48 47 47 35 32 32 19 18 11 11 18 17 17 11 11 10 10 13 15 11 11 14 11 7 7 8 8 8 8 10 10 9 9 12 9 9 10 13 11 15 10 10 10 8 9 9 9 9 14 10 8 8 8 8 8 8 8 10 11 21 14 9 9 9 12 10 13 11 11 10 10 10 10 10 10 10 17 26 21 22 17 17 14 12 14 18 17 20 9 9 10 9 9 9 9 12 12 27 30 22 18 15 15 14 23 13 9 9 9 10 12 13 9 9 9 9 10 10 10 8 8 6 6 8 8 8 10 8 9 9 9 8 8 8 13 12 9 12 8 13 8 9 8 8 8 8 11 8 8 8 8 8 14 15 14 12 12 8 8 8 8 10 10 8 8 8 10 10 8 10 12 12 12 8 8 6 6 10 8 8 8 8 8 13 15 8 8 8 8 8 11 10 8 8 6 6 6 6 9 9 9 9 12 12 17 15 10 8 8 8 11 10 8 8 9 11 11 9 8 12 10 7 6 8 8 8 8 6 6 8 8 8 8 11 10 10 8 8 8 8 8 8 8 12 12 11 8 8 8 8 10 8 11 11 13 23 16 12 10 10 10 8 8 6 6 8 8 8 8 10 21 22 25 28 14 12 14 10 10 8 8 8 8 8 10 18 17 10 8 8 8 8 8 8 8 12 16 18 16 14 10 10 10 10 10 10 13 12 13 9 10 16 17 14 10 12 15 14 13 13 13 13 19 23 14 14 11 11 9 9 9 8 8 10 8 8 10 8 13 9 9 12 10 12 12 11 14 8 6 6 6 8 8 8 8 6 6 8 8 8 8 7 6 8 13 13 10 11 11 8 8 8 8 8 8 7 6 8 8 6 6 8 8 8 8 10 18 11 11 11 12 11 11 11 14 11 16 13 11 11 11 18 18 15 24 14 17 17 13 10 10 9 9 9 9 8 8 6 7 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 13 12 12 12 10 10 10 8 10 8 9 10 10 11 11 8 8 8 8 10 10 10 12 10 14 11 10 9 8 8 8 8 8 8 8 12 12 22 15 12 9 8 10 8 6 6 6 8 8 8 9 10 10 8 10 10 11 8 8 8 8 12 10 12 8 8 8 9 13 10

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no539_c13.g1 MSMg01no539_c13.g1 CHROMAT_FILE:
MSMg01no539_c13.g1 PHD_FILE: MSMg01no539_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:00 2005
         (249 letters)



>mm_chr19_23345030_23345678
          Length = 649

 Score =  358 bits (185), Expect = e-103
 Identities = 197/201 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatggactagagataggacagggggttgctgtgagcaaattaagtcagataggttgaga 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 401 agatggactagagataggacaggaggttgctgtgagcaaattaagtcagataggttgaga 342

                                                                       
Query: 61  atagagggagagttataagctaaaggaagtacagattagtcaggaaactagaagaaatat 120
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 341 gtagagggagagttataagctaaaggaagcacagattagtcaggaaactagaagaaatat 282

                                                                       
Query: 121 ataatagaatttagagttctgagtagagatagaaaaaggagataggaaaaagttgaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ataatagaatttagagttctgagtagagatagaaaaaggagataggaaaaagttgaaact 222

                                
Query: 181 aaggctgagttacaaagcctt 201
           | |||||||||||||||||||
Sbjct: 221 agggctgagttacaaagcctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information