Query= MSMg01no539_l02.b1 MSMg01no539_l02.b1 CHROMAT_FILE:
MSMg01no539_l02.b1 PHD_FILE: MSMg01no539_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:44 2005
(432 letters)
>mm_chr19_54995478_54996310
Length = 833
Score = 791 bits (409), Expect = 0.0
Identities = 424/429 (98%), Gaps = 1/429 (0%)
Strand = Plus / Plus
Query: 5 gaattccacagtttccctctccattagctgccctgaccacttgataaagacttcggatta 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacagggaccctctccattagctgccctgaccacttgataaagacttcggatta 264
Query: 65 acacgccctgcctgattctctctggcttctctttacacccctgcttggaaatgtgttgct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acacgccctgcctgattctctctggcttctctttacacccctgcttggaaatgtgttgct 324
Query: 125 gtgtctgaaggaagcagccagtcatacaagataagcaagatcgaaatcatctttgaagtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgtctgaaggaagcagccagtcatacaagataagcaagatcgaaatcatctttgaagtt 384
Query: 185 ccatttctaaaggaatacttgggattttcagctctagaatacttagtaattagagacgca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccatttctaaaggaatacttgggattttcagctctagaatacttagtaattagagacgca 444
Query: 245 attcatcaggagggaaaatgacaaagttgacatttcaactgaaaagtcactggagctagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attcatcaggagggaaaatgacaaagttgacatttcaactgaaaagtcactggagctagg 504
Query: 305 gaatctgtctctaaacgtattaattacaggaggttgcttttggatggtggttgacgctaa 364
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaatctgtctcgaaacgtattaattacaggaggttgcttttggatggtggttgacgctaa 564
Query: 365 accatgatgcgccaaaaaaaaaaaaaaa-tgttttctttccatcagttctgctgatccga 423
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 accatgatgcgccaaaaaaaaaaaaaaaatgttttctttccatcagttctgctgatccga 624
Query: 424 cgcagattc 432
|||||||||
Sbjct: 625 cgcagattc 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 833
Length adjustment: 9
Effective length of query: 423
Effective length of database: 824
Effective search space: 348552
Effective search space used: 348552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_l02.g1 MSMg01no539_l02.g1 CHROMAT_FILE:
MSMg01no539_l02.g1 PHD_FILE: MSMg01no539_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:44 2005
(395 letters)
>mm_chr19_55196105_55196898
Length = 794
Score = 702 bits (363), Expect = 0.0
Identities = 393/417 (94%), Gaps = 23/417 (5%)
Strand = Plus / Minus
Query: 1 acatcccagaagaggggacaggtcactaacaggaactgcatgtgacattggagagtggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 acatcccagaagaggggacaggtcactaacaggaactgcatgtgacattggagagtggaa 393
Query: 61 cagtgcagtgtgtcacggggcaaccgtgtctctactttgaccttcactcccttctctgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cagtgcagtgtgtcacggggcaaccgtgtctctactttgaccttcactcccttctctgcc 333
Query: 121 cttgtcgtagtttgtcttctttcttagctgagcctctaagctatttctccagcaatctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cttgtcgtagtttgtcttctttcttagctgagcctctaagctatttctccagcaatctct 273
Query: 181 agtggttcctcaacactcatagatttacataggcaatgcctttcccagtaaactaaggat 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 agtggttcct-aacactcatagatttacataggcaatgcctttcccagtaaactaaggat 214
Query: 241 aaatttgtaaggggtgta----------------------tgtgtgtgtgtgtgtgtgac 278
||||||| |||||||||| ||||||||||||||||||||
Sbjct: 213 aaatttgcaaggggtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgac 154
Query: 279 cacatgtgtccaggtatatgtgtaaggatgtgaatgtgtaggctaaggtcaagtgttgta 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 cacatgtgtccaggtatatgtgtaaggatgtgaatgtgtaggctaaggtcaagtgttgta 94
Query: 339 cctcaggcagtatccgcctaccttttgagacatagtctctcactaggacccagggcc 395
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 cctcaggcagtatccgcctaccttttgagacatagtctctcactaggacccagggcc 37
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 794
Length adjustment: 9
Effective length of query: 386
Effective length of database: 785
Effective search space: 303010
Effective search space used: 303010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
