Query= MSMg01no539_l19.b1 MSMg01no539_l19.b1 CHROMAT_FILE:
MSMg01no539_l19.b1 PHD_FILE: MSMg01no539_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:48 2005
(596 letters)
>mm_chr19_34293373_34294368
Length = 996
Score = 1102 bits (570), Expect = 0.0
Identities = 585/590 (99%), Gaps = 1/590 (0%)
Strand = Plus / Plus
Query: 7 attctttagtttacctgctaacccatttaatccttgttacagcaatatcatcagtacctt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attctttagtttacctgctaacccatttaatccttgttacagcaatatcatcagtacctt 266
Query: 67 tacttctcagtgtttcagatgccccaacagtataacttacctgtagtcacacaggtggct 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tacttctcagtgtttcagatgccccaacagtataacttacctgtagtcacacaggtggct 326
Query: 127 gattttctattgctaccatattgatttccttgaacttaatggctaaagaccgtctatatt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gattttctattgctaccatattgatttccttgaacttaatggctaaagaccgtctatatt 386
Query: 187 catctcaggttttttgtgagacacgtatgtgagcttagcttacataaattctctatggta 246
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 catctcagggtttt-gtgagacacgtatgtgagcttagcttacataaattctctatggta 445
Query: 247 tcttaaggttgaaattgagctgttggccttgtaaggacagattagggatctgtaatttgg 306
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 446 tcttaaggttgaaattgagctgttgaccttgtaaggacagattagggatctgtaatttgg 505
Query: 307 gtgttggtgggtaggggctcagctgtggctgtggttgtggttcctctttgaagttcttgt 366
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 506 gtgttggtgggtaggggctcagctgtggctgtggttgtggctcctctttgaagttcttgt 565
Query: 367 ggtttgggatagaattagctttcctgcagctgcagaactcctggcatctgactctcaaaa 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggtttgggatagaattagctttcctgcagctgcagaactcctggcatctgactctcaaaa 625
Query: 427 caagctgttcaaagtcccacttcctctggtgaagacctcatggccttttaattaagacca 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 caagctgttcaaagtcccacttcctctggtgaagacctcatggccttttaattaagacca 685
Query: 487 actgcttaagtggctttagtatatctgcaacatatcttcatctgtgatatataatggaac 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 actgcttaagtggctttagtatatctgcaacatatcttcatctgtgatatataatggaac 745
Query: 547 ataatggtgggagcaatattcatttatcatgttccataggtagaagaccc 596
||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ataattgtgggagcaatattcatttatcatgttccataggtagaagaccc 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_l19.g1 MSMg01no539_l19.g1 CHROMAT_FILE:
MSMg01no539_l19.g1 PHD_FILE: MSMg01no539_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:48 2005
(535 letters)
>mm_chr19_34450373_34451309
Length = 937
Score = 978 bits (506), Expect = 0.0
Identities = 529/538 (98%), Gaps = 4/538 (0%)
Strand = Plus / Minus
Query: 1 tcattgggaactttggagattgcgttaagctaaaagttgggtttacgagtaaggtccttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tcattgggaactttggagattgcgttaagctaaaagttgggtttacgagtaaggtccttt 678
Query: 61 tccttgagaatcttgactctttttttaggagtgaaattttccatttactaaaaaataagt 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tccttgagaatcttgact-tttttttaggagtgaaattttccatttactaaaaaataagt 619
Query: 121 agattagattagtatgctca---aatgtttgcacaattccacacttaaaggagaaatgga 177
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 618 agattagattagtatgctcaaataatgtttgcacaattccacacttagaggagaaatgga 559
Query: 178 aaatacactaaatcttcccagtattttcttggcatagaggcaacaatgcagatttgttta 237
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 558 aaatacactaaatcttcccagtattttcttggcatagaggcaacaatgtagatttgttta 499
Query: 238 agaatctgaatgatcagagttttctaactcaaaaataatcaaattgagacaaccctgtcc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agaatctgaatgatcagagttttctaactcaaaaataatcaaattgagacaaccctgtcc 439
Query: 298 ttccaatacaacatcaggagactaaggataagggacaaaatttggtgccagatttttgtg 357
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 438 ttccaatacaacatcaggagactaaggataagggacaaaatttggtgccagacttttgtg 379
Query: 358 gataatggtgtggatagtggaggaagaagaagtgaaggtagggcaggtgagactggaagt 417
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 378 gataatggtgtggatagtggagaaagaagaagtgaaggtagggcaggtgagactggaagt 319
Query: 418 ttgatatataacatcttagatttcctatagtagctctttcaagccacacacatttttagg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttgatatataacatcttagatttcctatagtagctctttcaagccacacacatttttagg 259
Query: 478 aagatactttctattctgcttgtactctgtgcagcgcccatggtctgccttttgtgtc 535
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 258 aagatactttctattctgcttgtactctgtgcagtgcccatggtctgccttttgtgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 937
Length adjustment: 10
Effective length of query: 525
Effective length of database: 927
Effective search space: 486675
Effective search space used: 486675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
