BAC Information

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BAC

Clone NameMSMg01-543C13
Chromosome19 (Build37)
Map Location 8,280,844 - 8,281,458
singlet/doubletsinglet
Overlap geneD630002G06Rik
Upstream geneCox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705
Downstream geneEG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543C13.T7 (MSMg01no543_c13.b1)MSMg01-543C13.TJ (MSMg01no543_c13.g1)
ACCAG608762AG608763
length759757
length of high quality
(start - end)		287 (125 - 411)615 (77 - 691)
definitionCHROMAT_FILE: MSMg01no543_c13.b1 PHD_FILE: MSMg01no543_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:26 2005CHROMAT_FILE: MSMg01no543_c13.g1 PHD_FILE: MSMg01no543_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:26 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTCTAAAACTGGTGGCGCTATACGACTCACTATTTCGAGAGGATCCGCGG
AATTCCTTAACATTTCATAGGAAAGGAAGCTCATACCTTGTGAGTATAAA
GAAAAAGAATATTGGCACAGACATTGCTAGCTGGAGGTGATGCCAGATTC
TAAATAGAAAAGCCAGGCCTGCCAATATCATGTATCCAATACTAGCAGCA
CAAGATGTAAGCACTGCCACCATGCCTAGGAATTTAGGGCTTGTCCATTC
TAAAACTGAAAGAAAAAGATACATTGACTTGAAAGGGATTTGAGGGTCAA
GACCTAAGTTTGAGCAAGGGCCCATTTCAAACTCTTTGACTTACTGAGCA
AGTTACTATTTACTGATATGGGTTCCACAGACATTCCTGCCAGGAATCGA
AGTAAGCAGTAGATGAAGAAGGAGGGAGCAAAAGCTACACAGGTTTCAGT
GATGGCAAATTGTAATAAAGCACATGTTAAAATGAACTTCCTCCCAAACC
TGATAAAAAGAAAAAAAAATTAAATTAGAGGAACAATTCGGTTTGCTTGA
AACTTCTAAGCATATATAATTATAAATAATACGGAATTATAAATAATAGA
GGCTGCATGAACAAGAGATTTTTTTATTTTTATTATTAATACCTAGTTTA
ACAATATTTTTTCTCAATTCCTTACCCGAAAATTTGACTACCTCATGCCC
AATGATAAAATACCATGTTTGACTTTAATAGCATTTCCTAAAAAATTCCA
TTATCACTT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGACAGTAATGAACAGGTATAA
GGACATAAGAAATGCATTTATCTTTGGTCTACACCTGACAGTGTGAGCTC
CTCTTTGCAATTATTGGAGAGGAGAACAAGAACCAATGTCAGATAAAATG
GAGGAGACTGAATTCTGCCTAAATGTGAGGTAAACATTAAATAAATTTAT
AAAATCATATATTACTGTGGGAGGAGTTACTGGTACATTGAAGAGGATTC
ACTTCTTTATCAAAAATTTTGTTTAAATTCAAATTCTGTATTTCACAAAT
TAACTAGATGAAAGGTATGATAACATCTAATTGAGTTCATATTATAAATA
AACATTTAATATTAAAGAAATTATATTGAAAATATTGGATATGTTACCCC
GATAGAAAAAATTTTATACTATTTGGTAGTTAGGTGCTACTATGCAGAGT
TTAAGTTTCTCTGGTAGAAAAACAAAACAAAAACAAGAGTAGCAATGAAT
GCAGCCTGAATATTTTTCTTCTTTCTGTCTGTCTTTATGTGGTGGCTATT
CTTGGTTGTCTACTTGACTGCATCTATAATGAATTAAAATTCATAATTGA
AAAGTACACCTGTGAGAAATAACTTTTTCTAGGTTTGAAGTGGGTGAATT
CACTTCTAGTCCAGACTTTTGAAGTAGGAGGACACATATTTTTGATTTGG
ATCTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_c13.g1 MSMg01no543_c13.g1 CHROMAT_FILE:
MSMg01no543_c13.g1 PHD_FILE: MSMg01no543_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:26 2005
         (615 letters)



>mm_chr19_8280759_8281773
          Length = 1015

 Score = 1166 bits (603), Expect = 0.0
 Identities = 612/615 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgacagtaatgaacaggtataaggacataagaaatgcatttatctttggtctacacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tgtgacagtaatgaacaggtataaggacataagaaatgcatttatctttggtctacacct 641

                                                                       
Query: 61  gacagtgtgagctcctctttgcaattattggagaggagaacaagaaccaatgtcagataa 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 640 gacagtgtgagctcctctttgcaattatcggagaggagaacaagaaccaatgtcagataa 581

                                                                       
Query: 121 aatggaggagactgaattctgcctaaatgtgaggtaaacattaaataaatttataaaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 aatggaggagactgaattctgcctaaatgtgaggtaaacattaaataaatttataaaatc 521

                                                                       
Query: 181 atatattactgtgggaggagttactggtacattgaagaggattcacttctttatcaaaaa 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 atatgttactgtgggaggagttactggtacattgaagaggattcacttctttatcaaaaa 461

                                                                       
Query: 241 ttttgtttaaattcaaattctgtatttcacaaattaactagatgaaaggtatgataacat 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 460 ttttgtttaaattcaaattctgtatttcacaaattagctagatgaaaggtatgataacat 401

                                                                       
Query: 301 ctaattgagttcatattataaataaacatttaatattaaagaaattatattgaaaatatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ctaattgagttcatattataaataaacatttaatattaaagaaattatattgaaaatatt 341

                                                                       
Query: 361 ggatatgttaccccgatagaaaaaattttatactatttggtagttaggtgctactatgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ggatatgttaccccgatagaaaaaattttatactatttggtagttaggtgctactatgca 281

                                                                       
Query: 421 gagtttaagtttctctggtagaaaaacaaaacaaaaacaagagtagcaatgaatgcagcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gagtttaagtttctctggtagaaaaacaaaacaaaaacaagagtagcaatgaatgcagcc 221

                                                                       
Query: 481 tgaatatttttcttctttctgtctgtctttatgtggtggctattcttggttgtctacttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 tgaatatttttcttctttctgtctgtctttatgtggtggctattcttggttgtctacttg 161

                                                                       
Query: 541 actgcatctataatgaattaaaattcataattgaaaagtacacctgtgagaaataacttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 actgcatctataatgaattaaaattcataattgaaaagtacacctgtgagaaataacttt 101

                          
Query: 601 ttctaggtttgaagt 615
           |||||||||||||||
Sbjct: 100 ttctaggtttgaagt 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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