Query= MSMg01no543_f18.b1 MSMg01no543_f18.b1 CHROMAT_FILE:
MSMg01no543_f18.b1 PHD_FILE: MSMg01no543_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:42 2005
(579 letters)
>mm_chr19_3520329_3521307
Length = 979
Score = 975 bits (504), Expect = 0.0
Identities = 519/524 (99%)
Strand = Plus / Minus
Query: 56 gatacctggatgcccttgtgtctcagcagtcctagtctatcgcactggataatacacctc 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 979 gatacctggatgcccttgtgtctcagcagtcctagtctatcgcactggataatacatctc 920
Query: 116 agtattcttatagataccaccccttgacaccttttcctttctaattcagacttacgtgga 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 agtattcttatagataccaccccttgacaccttttcctttctaattcagacttacgtgga 860
Query: 176 aatgccgttcccaaggaatggttcaccaagtgtgacctttggatcagtgtcaacagcatc 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 aatgccgttcccaaggaatggttcaccaagtgtgacctttggatcagtgtcaacagcatc 800
Query: 236 tactgagatttttttaaaacattgctgtgcgggagtcttgacagtgggggtttctagcgc 295
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 799 tactgagatttttttaaaagattgctgtgcaggagtcttgacagtgggggtttctagcgc 740
Query: 296 atctttcatttcagttcatgctattgcctgctggaattggagaaccatttctctagtgga 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 atctttcatttcagttcatgctattgcctgctggaattggagaaccatttctctagtgga 680
Query: 356 tattgttgtgaaggtgcaagagctcacttccaagaatcagctagagcagcggatgctgag 415
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 679 tattgttgtgaaggtgcaagagctcacttccaagaaacagctagagcagcggatgctgag 620
Query: 416 tgcaagctgacagatcagttgcagcaagcagagatgagcatggtcaagccattcagacct 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgcaagctgacagatcagttgcagcaagcagagatgagcatggtcaagccattcagacct 560
Query: 476 gctgtttactcttcatggtggacagtagtctccagttacttggtcttgctctgtggtcgg 535
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gctgtttactcttcatggtgggcagtagtctccagttacttggtcttgctctgtggtcgg 500
Query: 536 cacacatgatagaactgaaactattttgggcccattatgttctg 579
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cacacatgatagaactgaaactattttgggcccattatgttctg 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_f18.g1 MSMg01no543_f18.g1 CHROMAT_FILE:
MSMg01no543_f18.g1 PHD_FILE: MSMg01no543_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:42 2005
(608 letters)
>mm_chr19_3363976_3364983
Length = 1008
Score = 1129 bits (584), Expect = 0.0
Identities = 596/600 (99%)
Strand = Plus / Plus
Query: 9 cctgcccatgtgtgcactgctatatagttctatgcctagttttatgcattccaacagttg 68
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 209 cctgcccatgtgtgcactgctatatagttctatgcctagttttatacattccaacagttg 268
Query: 69 agctaaaacccagcccgactctttttatttatttatttaaacgcaatatgaaactatgct 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agctaaaacccagcccgactctttttatttatttatttaaacgcaatatgaaactatgct 328
Query: 129 ctatagtctagccaggtctccctttaagaccagtgtgtctctcaattccttatggcctgt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctatagtctagccaggtctccctttaagaccagtgtgtctctcaattccttatggcctgt 388
Query: 189 ctgcttgagacagctttgttttggagcctgtcatacactggaattttccagaaagatttg 248
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctgcttgagacaactttgttttggagcctgtcatacactggaattttccagaaagatttg 448
Query: 249 catacatctgggcatgactgctcagcatgctgacttgtcgtgcttgtaccataggtgagt 308
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 449 catacatctgggcatgactgctcagcgtgctgacttgtcgtgtttgtaccataggtgagt 508
Query: 309 gactggtgggaggaatacatctacctgcggggccgagggccgatcatggttaacagcaac 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gactggtgggaggaatacatctacctgcggggccgagggccgatcatggttaacagcaac 568
Query: 369 tactacgccatggtgagttggtcttccattcccactgcagccaagatgggtttgtcctgc 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tactacgccatggtgagttggtcttccattcccactgcagccaagatgggtttgtcctgc 628
Query: 429 tgggtggcctgggaaagctcctcttgctcctgcttcttttgtccaagtcttcatgttgct 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tgggtggcctgggaaagctcctcttgctcctgcttcttttgtccaagtcttcatgttgct 688
Query: 489 gtgaagagcccacctggggcccatgtgttagacccccctgtgtcttaacgggcccctgcc 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gtgaagagcccacctggggcccatgtgttagacccccctgtgtcttaacgggcccctgcc 748
Query: 549 ctccacccaacagtgcaaatacattttcattgcaaacaacacttgctatgtaagtgcagg 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ctccacccaacagtgcaaatacattttcattgcaaacaacacttgctatgtaagtgcagg 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
