Query= MSMg01no543_n17.b1 MSMg01no543_n17.b1 CHROMAT_FILE:
MSMg01no543_n17.b1 PHD_FILE: MSMg01no543_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:21 2005
(667 letters)
>mm_chr19_11270637_11271703
Length = 1067
Score = 1268 bits (656), Expect = 0.0
Identities = 662/664 (99%)
Strand = Plus / Plus
Query: 4 ggaattctagagcaatcttgtcaacacagtgagaccccacatttcaaaaagtaaataaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctagagcaatcttgtcaacacagtgagaccccacatttcaaaaagtaaataaaa 263
Query: 64 gtattttttagaaggtcaaacgagagggtataaaagatggagaatggagatgtgcccacc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtattttttagaaggtcaaacgagagggtataaaagatggagaatggagatgtgcccacc 323
Query: 124 tctctttcctcaaccccctttctccagaccgtgtccattttgatgcttagcaaaagtaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctctttcctcaaccccctttctccagaccgtgtccattttgatgcttagcaaaagtaaa 383
Query: 184 gaggcacactgttacctcacatttcagttgtcccaagacctaaggatccagtttcaccct 243
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 gaggcacactgttacctcacatttcagttgtcccaagacccaaggatccagtttcaccct 443
Query: 244 atcaggcctaggcacaggctgaagagaaggatcacagtggatggtgctctcagcgctaga 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 444 atcaggcctaggcacaggctgaagagaaggatcaccgtggatggtgctctcagcgctaga 503
Query: 304 tctggctgcatagccatcagaggcagcagcgcgcagtctagctcccaggtggttgtcaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctggctgcatagccatcagaggcagcagcgcgcagtctagctcccaggtggttgtcaag 563
Query: 364 ctcctcaagccgccgggttgtcaagggcaacagccctctcttagggcagagggatgagaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctcctcaagccgccgggttgtcaagggcaacagccctctcttagggcagagggatgagaa 623
Query: 424 ccagtgcgcagactcactggggcctgcgggccacgccctggtccctcacttcgatcctct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccagtgcgcagactcactggggcctgcgggccacgccctggtccctcacttcgatcctct 683
Query: 484 tctggagtttctagtaatggcttccctggacatggctggaacactgcctcttcagggatg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tctggagtttctagtaatggcttccctggacatggctggaacactgcctcttcagggatg 743
Query: 544 cttctcctaagatagaatggccgcagagacctgatcgtttaccacacatttcagaaggtt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cttctcctaagatagaatggccgcagagacctgatcgtttaccacacatttcagaaggtt 803
Query: 604 tcaagttgtaaaaaggcaagtaaatgagttaatagtttactcttcttccaccctcctcca 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tcaagttgtaaaaaggcaagtaaatgagttaatagtttactcttcttccaccctcctcca 863
Query: 664 aata 667
||||
Sbjct: 864 aata 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_n17.g1 MSMg01no543_n17.g1 CHROMAT_FILE:
MSMg01no543_n17.g1 PHD_FILE: MSMg01no543_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:21 2005
(651 letters)
>mm_chr19_11437957_11439011
Length = 1055
Score = 1007 bits (521), Expect = 0.0
Identities = 617/661 (93%), Gaps = 28/661 (4%)
Strand = Plus / Minus
Query: 3 taatctgtgggaggaaattacagaaaatgaaatcgtctaccctcctttctgaaataaagc 62
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 964 taatctgtgggaggaaattacagaaaatgaaaccgtctaccctcctttctgaaataaatc 905
Query: 63 aggaagatgtggactttttctacaaatagtcctcgattaggagttgggtgttcctccagg 122
|||||||||||||||||| |||||||||| ||| |||| ||||||| ||| ||||||||
Sbjct: 904 aggaagatgtggacttttcctacaaatagccctagatttggagttgactgtccctccagg 845
Query: 123 accctgtgttaacagtctagaacatgct---gtgctgctgt----tggataagtgtgaaa 175
||||||| | |||| || || ||| || ||| ||| ||||||||
Sbjct: 844 accctgt-----c---ctagtac---ctcaggtggtggtgttaagtgg----gtgtgaaa 800
Query: 176 tctt-aagaaagtggctttagtgaaagggactgagaattgctggtagcttgtccttaaaa 234
|||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 799 tcttaaag-aagtggctttagtgaaagggactgagaattgctggtggcttgtccttaaaa 741
Query: 235 tgaagaggaacaaccatcatccttcctcctctctgccctctcagccatgaggtcaacagt 294
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 740 tgaagaggaacaaccatcatcctccctcctctctgccctctcagtcatgaggtcaacagt 681
Query: 295 ttgcttcaccatggtcttccaccgtgaagtgcagacagagcacagacctccccaccccat 354
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 680 ttgcttcaccatggtcttccaccgtgaagtgcagtcagagcacagacctccccaccccat 621
Query: 355 ggcagattcatttcaaaatggactgatacctctcaaactgtgagtttaaaaatcaaaaca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggcagattcatttcaaaatggactgatacctctcaaactgtgagtttaaaaatcaaaaca 561
Query: 415 aaacaaacaacaacaaacccacaaaactttactttcattttgtta-ttctttcagagttt 473
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 560 aaacaaacaacaacaaacccacaaaactttactttcattttgttagttctttcagagttt 501
Query: 474 catacagtgtattttgatcatatctacccctagtcccacttctcccagccccactccctc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 catacagtgtattttgatcatatctacccctagtcccacttctcccagccccactccctc 441
Query: 534 tttacccacccacctttgtgttctcgttc---ttatatctgtagtttaacacaccaatga 590
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 440 tttacccacccacctttgtgttctcgttctcgttatatctgtagtttaacacaccaatga 381
Query: 591 gagtaaagttcatctctcaacccttattagagaagcttccttttgccctagatagaggtt 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gagtaaagttcatctctcaacccttattagagaagcttccttttgccctagatagaggtt 321
Query: 651 a 651
|
Sbjct: 320 a 320
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1055
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1045
Effective search space: 669845
Effective search space used: 669845
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
