TGAGGAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTATTGTCATATTTTCGGTTTTTTTTTTGTTTTTTTGTT
TTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAG
CTCACTTTGTAGACCAGGCTATCCTCAAACTCAGAAATCTGCCTGCCTCT
GCCTCCTGAGTGCTGGGATTAAAGGCGTGTGCCACCTGAACAAGCCTGAG
AATCTGATCACTCTAGGGTTGCATGCCATGGCCGGGAGAGATGTAGGACT
CTTCCACATGGTCATGTTTGCTAGGCTCAGTTGTCAAGGAATGTGTACCA
CTTTTCCCCAGAACATCTCGAGGTATGGTGTTTGTCTGGGCAGCCATCTC
TCTATACTAAGGCTCTGCATCAATGAATGAATTATCTGTTAACCATTTTT
AATCATGTGCCAAATGTTAGCAGACCTTTTCTTTTAATCATTCCCTAGGC
AACACAGTACAATAACTATTTACATAATAGCCATTGGTGTTAGGGAATGC
AAGGAGTCTAGAGATGGTTTAAAGCATTCAGGATGATGTGCCCAAGTCAT
ATGGAAATGCTTTGCTATTTTATACAATATATTTGAGCATGTGCAGATAT
GAGTATCTTTGAGGTTCCTGGAGCCAGTTCCTCTTGGATGATAATATAGA
ACTTGAATCTAGAGTTACTTGAGACTCACATGAGATACTAGTGGACCTA

GGCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACGGGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAACACGCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCACTATGTTCAGAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTATACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
CAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGA
TAAGTGGATATTAGCCCAAAACCTAGGATACCCTAGATATAAGATACAAT
TTTCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACT
ATGN

Query= MSMg01no544_a04.b1 MSMg01no544_a04.b1 CHROMAT_FILE:
MSMg01no544_a04.b1 PHD_FILE: MSMg01no544_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:32 2005
         (669 letters)



>mm_chr19_16955979_16957047
          Length = 1069

 Score = 1210 bits (626), Expect = 0.0
 Identities = 656/666 (98%), Gaps = 1/666 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttattgtcatattttcg-gttttttttttgtttttttgtttttggtttttcgag 63
           |||||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||
Sbjct: 204 gaattcttattgtcatattttcgttttttttttttttttttttttttttggtttttcgag 263

                                                                       
Query: 64  acagggtttctctgtgtagccctggctgtcctggagctcactttgtagaccaggctatcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 264 acagggtttctctgtgtagccctggctgtcctggagctcactttgtagaccaggctagcc 323

                                                                       
Query: 124 tcaaactcagaaatctgcctgcctctgcctcctgagtgctgggattaaaggcgtgtgcca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcaaactcagaaatctgcctgcctctgcctcctgagtgctgggattaaaggcgtgtgcca 383

                                                                       
Query: 184 cctgaacaagcctgagaatctgatcactctagggttgcatgccatggccgggagagatgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctgaacaagcctgagaatctgatcactctagggttgcatgccatggccgggagagatgt 443

                                                                       
Query: 244 aggactcttccacatggtcatgtttgctaggctcagttgtcaaggaatgtgtaccacttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggactcttccacatggtcatgtttgctaggctcagttgtcaaggaatgtgtaccacttt 503

                                                                       
Query: 304 tccccagaacatctcgaggtatggtgtttgtctgggcagccatctctctatactaaggct 363
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 504 tccccagaacatctcgaggtatggtgtttgtctgggcagtcatctctctatactaaggct 563

                                                                       
Query: 364 ctgcatcaatgaatgaattatctgttaaccatttttaatcatgtgccaaatgttagcaga 423
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 564 ctgcatcaatgaatgaattatctgttagccatttttaatcatgtgccaaatgttagcaga 623

                                                                       
Query: 424 ccttttcttttaatcattccctaggcaacacagtacaataactatttacataatagccat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccttttcttttaatcattccctaggcaacacagtacaataactatttacataatagccat 683

                                                                       
Query: 484 tggtgttagggaatgcaaggagtctagagatggtttaaagcattcaggatgatgtgccca 543
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tggtgttagggaatggaaggagtctagagatggtttaaagcattcaggatgatgtgccca 743

                                                                       
Query: 544 agtcatatggaaatgctttgctattttatacaatatatttgagcatgtgcagatatgagt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agtcatatggaaatgctttgctattttatacaatatatttgagcatgtgcagatatgagt 803

                                                                       
Query: 604 atctttgaggttcctggagccagttcctcttggatgataatatagaacttgaatctagag 663
           ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atctttggggttcctggagctagttcctcttggatgataatatagaacttgaatctagag 863

                 
Query: 664 ttactt 669
           ||||||
Sbjct: 864 ttactt 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)