Query= MSMg01no544_o24.b1 MSMg01no544_o24.b1 CHROMAT_FILE:
MSMg01no544_o24.b1 PHD_FILE: MSMg01no544_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:46 2005
(628 letters)
>mm_chr19_59249125_59250153
Length = 1029
Score = 1056 bits (546), Expect = 0.0
Identities = 615/652 (94%), Gaps = 29/652 (4%)
Strand = Plus / Plus
Query: 1 gaattccacttcttatccttgcacattgtatcaaggaactaagttttgtcggtaatgaat 60
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 183 gaattccacttcttagccttgcacattgtatcaaggaactaagttttgtcagtaatgaat 242
Query: 61 taatagtttgaa-tatgaagcattcaattaaaaaa--tttacagtgatactgctcagtaa 117
|||||| || || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 243 taatagctt-aagtatgaagcattcaattaaaaaaattttacagtgatactgctcagtaa 301
Query: 118 ctctataggttcatttattttatttattttttttaaattgcaggtcagaaaaagaccctg 177
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 302 ctctataggttcatttattttattt---ttttttaa-ttgcaggtcagaaaaagaccctg 357
Query: 178 tcttttt---aaaaaagatttatttatttagtttatgtatatgagtagctgtacagatgg 234
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 358 tctttttttaaaaaaagatttatttatttattttatgtatatgagtagctgtacagatgg 417
Query: 235 ttgtgagccttcatgtggatgttgggaattgaattttagggcctctgcttgctctggtca 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttgtgagccttcatgtggatgttgggaattgaattttagggcctctgcttgctctggtca 477
Query: 295 gctccactcgctc----------------ttattcttagtagtacactgttactgtcttc 338
| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 478 accccactcgctcaggcccaaagatttatttattcttagtagtacactgttactgtcttc 537
Query: 339 agacacaccagaagagggagtcagatcccattacgggtggttgtgagccaccatgtggtt 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 agacacaccagaagagggagtcagatcccattacgggtggttgtgagccaccatgtggtt 597
Query: 399 gctgggatttgaactcatgaccttcagaagaccagtcagtgttcttacctgctgagccat 458
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 598 gctgggatttgaactcatgaccttcagaagagcagtcagtgttcttacctgctgagccat 657
Query: 459 ctcaccagccctctttttttttttcttt--aaatggaacaaaaccaaacaaagaagtgga 516
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 658 ctcaccagccctcttttttttttttttttaaaatggaacaaaaccaaacaaagaagtgga 717
Query: 517 acaaatatggactctgtagccaaccaggttacataattcatgtgtgaaagtcccagctcc 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 acaaatatggactctgtagccaaccaggttacataattcatgtgtgaaagtcccagctcc 777
Query: 577 atatattagacactcatccttaaacagttacattctttctctatgcctcagt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 atatattagacactcatccttaaacagttacattctttctctatgcctcagt 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1029
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1019
Effective search space: 629742
Effective search space used: 629742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_o24.g1 MSMg01no544_o24.g1 CHROMAT_FILE:
MSMg01no544_o24.g1 PHD_FILE: MSMg01no544_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:46 2005
(561 letters)
>mm_chr19_59420452_59421415
Length = 964
Score = 1015 bits (525), Expect = 0.0
Identities = 554/565 (98%), Gaps = 5/565 (0%)
Strand = Plus / Minus
Query: 1 caggacagccagggctacacagagaaaccctgtctcgaaaaacaaacaaacaaacaa--- 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 caggacagccagggctacacagagaaaccctgtctcgaaaaacaaacaaacaaacaaccc 751
Query: 58 ccccccccaaagaaaa-ctccagcatcctccgtgttattatgccaagtagaaaccaagga 116
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ccccccccaaaaaaaacctccagcatcctccgtgttattatgccaagtagaaaccaagga 691
Query: 117 cttaggatcccacgatgtgacccctaagcaatttctttactatgccacgggtaccacggg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cttaggatcccacgatgtgacccctaagcaatttctttactatgccacgggtaccacggg 631
Query: 177 ttattctgtgaaattggtaggcactaaaagtaatggcctgagggatggactccggataat 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttattctgtgaaattggtaggcactaaaagtaatggcctgagggatggactccggataat 571
Query: 237 gccctcagagaggaaagaagggaggaggggggcgtgaacaatctgaatggagttgctaag 296
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 570 gccctcagagaggaaagaagggaggaggggggcgtgaacaatctgaatggagtcgctaag 511
Query: 297 acaccttccaatatgctggcaaattcactcagctcacccactcctcccagacctcaaata 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 acaccttccaatatgctggcaaattcactcagctcacccactcctcccagacctcaaata 451
Query: 357 aacttctttctcacttaaattgaaatcccccaaggtgggaaagttagtccccttctcgcg 416
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 450 aacttctttctcacttaaattgaaat-ccccaaggtaggaaagttagtccccttctcgcg 392
Query: 417 gttccgcttggtcccttctcggggcccattctctgcggatgcaggtctgccggtccgtgc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 391 gttccgcttggtcccttctcggggcccattctctgcggatgcaggtctgccggtctgtgc 332
Query: 477 gggctagcgatggcaatccctgatgcagtctgtcttctggccggctcgggcagtgtccca 536
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 331 gggctagcgatggcaatccctgatgcagtctgtcctctggccggctcgggcagtgtccca 272
Query: 537 accgcctgtgctcgggctctctgcg 561
||||||||||||| |||||||||||
Sbjct: 271 accgcctgtgctcaggctctctgcg 247
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 964
Length adjustment: 10
Effective length of query: 551
Effective length of database: 954
Effective search space: 525654
Effective search space used: 525654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
