Query= MSMg01no544_p08.b1 MSMg01no544_p08.b1 CHROMAT_FILE:
MSMg01no544_p08.b1 PHD_FILE: MSMg01no544_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:48 2005
(625 letters)
>mm_chr19_58683972_58684996
Length = 1025
Score = 955 bits (494), Expect = 0.0
Identities = 577/616 (93%), Gaps = 19/616 (3%)
Strand = Plus / Minus
Query: 10 ccaacatctaacgaagaacacatttagattcttagaaaattcaaagaaccttttagtgta 69
||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 1025 ccaacatctaaggaagaacacatttagattcttaggaaattcaaagaaacttttagtgta 966
Query: 70 ggatattgctttctactgaaggtagctcgctcccacaaccaatatctgtaagtctccctt 129
|||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 965 ggatattgctttctaccaaaggtagctcgttcccacagccaatatctgtaagtctccctt 906
Query: 130 atcttgtgaaacttgtatgtaaaggaactttacagattatttttttaggttttatttatt 189
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 905 atcttgtgaaacttgtatgtaaaggaactttacagatt-tttttttaggttttatttatt 847
Query: 190 tgttttatatatatgacaagcaaactatagctgtcttcaggcaccccagaagagggcatc 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 tgttttatatatatgacaagcaaactatagctgtcttcaggcaccccagaagagggcatc 787
Query: 250 agatcgcattacagatggttgtgagccaccatgtggttgctgggatttgaactcaggacc 309
||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||
Sbjct: 786 agatcgcattacagatggttgtgagccgccatgtagttgttgggatttgaactcaggacc 727
Query: 310 tatggaagaatagtcagtgctcttaaccactgagccatctctccagcccagaattcaggt 369
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 726 tatggaagaatagtcagtgctcttaaccactgagccgtctctccagcccagaattcagat 667
Query: 370 cttttaatctcccttatctggtaaaacttttgtttatccagaggcctcactgcattccca 429
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cttttaatctcctttatctggtaaaacttttgtttatccagaggcctcactgcattccca 607
Query: 430 ggaacttcgtggcctcaccttcctcaagatggtccttttacctgagcctttacttcattt 489
|||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 606 ggaacttcatggcctcaccttcctcaagatggtccctttacctgagcc------------ 559
Query: 490 tctatgagctgattctttttatgtagtcagctgcaagatggtgaggttggactccagcca 549
||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 558 ------agctgattctttttaagtagtcagctgcaagatggtgaggttggaccccagcca 505
Query: 550 aagggggaaagagagtcaccacttgagttaggtaaggactaaataaactccctgccctgg 609
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 504 aaggggaaaagagagtcaccacttgaattaggtaaggactaaataaactccctgccctgg 445
Query: 610 gttgcttgctcccttc 625
| ||||||||||||||
Sbjct: 444 ggtgcttgctcccttc 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_p08.g1 MSMg01no544_p08.g1 CHROMAT_FILE:
MSMg01no544_p08.g1 PHD_FILE: MSMg01no544_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:48 2005
(567 letters)
>mm_chr19_58544527_58545493
Length = 967
Score = 1062 bits (549), Expect = 0.0
Identities = 561/565 (99%)
Strand = Plus / Plus
Query: 1 caggacagctaaggtttgttacactgagaagcctgtctcaaaaaaaaatcctatttccag 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 caggacagctaaggtttgttacactgagaagcctgtctcaaaaataaatcctatttccag 260
Query: 61 cttcttttgaacaatccagagatctgacattgggtatgaactcacacagtacctacaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcttttgaacaatccagagatctgacattgggtatgaactcacacagtacctacaggg 320
Query: 121 agctctcagtcatgtgacatgtacaacttcatccatccaattcctcttactttatgtgtc 180
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 agctctcagtcatgtggcatgtacaacttcatccatccaattcctcctactttatgtgtc 380
Query: 181 aggtaatatgggactatcttgatgaaggctcacattgcctgctaggtggctatactagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtaatatgggactatcttgatgaaggctcacattgcctgctaggtggctatactagtt 440
Query: 241 agggtttgctaaaggaatagaaccaaggcaatgtatgtgtatgtacatgtatacacacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggtttgctaaaggaatagaaccaaggcaatgtatgtgtatgtacatgtatacacacat 500
Query: 301 acatagatatgaatctattaagccatcttattttaaaataggaacatcaacggattccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatagatatgaatctattaagccatcttattttaaaataggaacatcaacggattccca 560
Query: 361 ctagagaggctgagaactgggtagttactttgtccttggggtaggtgcctcagtagtcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctagagaggctgagaactgggtagttactttgtccttggggtaggtgcctcagtagtcag 620
Query: 421 agtagcccacagtagcagtttcatagtgggggagttaattatctagaactttctcagtct 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 agtagcccacagtagcagtttcatagtgggggagttaattatctagcactttctcagtct 680
Query: 481 acaaggtgcaatacctcaacattcgcaatcagcggtccttaggccttggtggaagcctag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaaggtgcaatacctcaacattcgcaatcagcggtccttaggccttggtggaagcctag 740
Query: 541 aaatactagctgtgctgtcaatgaa 565
|||||||||||||||||||||||||
Sbjct: 741 aaatactagctgtgctgtcaatgaa 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
