BAC Information

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BAC

Clone NameMSMg01-545F16
Chromosome19 (Build37)
Map Location 21,234,144 - 21,385,032
singlet/doubletdoublet
Overlap geneLOC100042294, LOC100041602, LOC100041613, Zfand5
Upstream geneLOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
Downstream geneGda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229, Trpm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545F16.T7 (MSMg01no545_f16.b1)MSMg01-545F16.TJ (MSMg01no545_f16.g1)
ACCAG610437AG610438
length745743
length of high quality
(start - end)		637 (36 - 672)612 (65 - 676)
definitionCHROMAT_FILE: MSMg01no545_f16.b1 PHD_FILE: MSMg01no545_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:18 2005CHROMAT_FILE: MSMg01no545_f16.g1 PHD_FILE: MSMg01no545_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,234,144 - 21,234,776)(21,384,681 - 21,385,032)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTGA
GTACAAGGTCAGGAACTTCAGAAGTTGAAAGAATCAAAGAAGAGTAATAA
TTGCTGAATCACGAGGTAATCATTAAACGAGAAAATAGAGACAAGAAAGG
AGGGAGGAGAGAAGCTTTAATAGCTATTTGCCTCTACGGCACAAAATTGA
TGCGAAGACATTTTTATTATCTGGATCATCTAGGTCTTAGCCATGGTTCC
CTGGCTTTCTTTGCCTGAGTAAGCCTGAATCTAAGGCAATAAAATTGAGA
AAATACCATGACCTAGGAAAAGGGGAGACTGTCCAACCAGCCCAAGTCAG
AAAGCTGTGCTGTTCTGAACAGTTCACTGCCTTCGGTCAGCAAGTGCTTA
GCCAGTGGCTAAGAGTGCTTCAGGCTGTCTTCTATACAGCCTTGTCCTGG
TTGTGCTGTTCCTTCAATCAGTTGTTTAATGAGTTCATGTGCCAAGAACT
GTCTCAGACTCTTTGATACATTAATGAACAAAATAGCTAAGGTTCTCTGC
CCTCCCCAAACTTACAGTCTAGCACATATGCAGATAAGAAAGCTATATTA
CTAATTCCCACAACATANAAAGGGAGAGGTAAGCCGGGGAGTGGGGGTGG
GTTGAGGTAAGCTTTACTGGAAAATTAGATTGGAGTCAAGCGTTTAAGAC
AAGGGCAAATAGCTGTGGGTGCTATGGCCTTCTGGAGACAGGGGN

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATGGGGAACAAAATATCCAGGGGACGTCGAGATTCA
CCCATGGACCAAGTGCTGGATTCACAGTTGGTGTCCCTCAGGGAAATTAC
AAGTAGGAGAGTACTCGGCTTAAGGTTTGAATATCCTGGGGTTGGATTAC
TTGGGTAAATCCCCCTCAGCCTCCCTGAGACTTAGTTTCTGCTTTTGCAA
AGTGAAACTAAAAAGGCATGTTTTTTATAGGTAATGCAGGCTGGATAGTT
CTTGTCCAAACTGCTTCAGAAGAAAGCATGTTGGGCTGGTGAGATGGCTC
AGCGGGTAAGAGCACCGACTGTTCTTCCGCAGGTCCTGAGTTCAAATCCC
ACATGGTGGCTCACAACCACCCGTAATGAGATCTGACGCCCTCTTCTGGT
GCATCTGAAGACAGCTACAGTGTACTTATTTATAATAATAAATAAATAAA
TATATTTATTAAAAAAAGAAAAGAAAGCATGTCTGACTTTATTTTGGATG
GAATTTCATAAATATATGATGATACCTTGGGTATGGAACTCATTTAAATA
TCAAGTTAATTTTGTGTGTACTTTATGCACAAGGCTTTGGGATAACTTGA
TAATTTCTGGTTTCTTTTCTTTGTGGTACTGAGAGTGGAAAAAAGAACTT
CAAGCATGCTAGGAAAGAACTCTATCACTGAGCTACATCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_f16.b1 MSMg01no545_f16.b1 CHROMAT_FILE:
MSMg01no545_f16.b1 PHD_FILE: MSMg01no545_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:18 2005
         (637 letters)



>mm_chr19_21233940_21234976
          Length = 1037

 Score = 1180 bits (610), Expect = 0.0
 Identities = 627/633 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgagtacaaggtcaggaacttcagaagttgaaagaatcaaagaagagtaata 64
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgagtacaaggtcagaaacttcagaagttgaaagaatcaaagaagagtaata 264

                                                                       
Query: 65  attgctgaatcacgaggtaatcattaaacgagaaaatagagacaagaaaggagggaggag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgctgaatcacgaggtaatcattaaacgagaaaatagagacaagaaaggagggaggag 324

                                                                       
Query: 125 agaagctttaatagctatttgcctctacggcacaaaattgatgcgaagacatttttatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaagctttaatagctatttgcctctacggcacaaaattgatgcgaagacatttttatta 384

                                                                       
Query: 185 tctggatcatctaggtcttagccatggttccctggctttctttgcctgagtaagcctgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctggatcatctaggtcttagccatggttccctggctttctttgcctgagtaagcctgaa 444

                                                                       
Query: 245 tctaaggcaataaaattgagaaaataccatgacctaggaaaaggggagactgtccaacca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctaaggcaataaaattgagaaaataccatgacctaggaaaaggggagactgtccaacca 504

                                                                       
Query: 305 gcccaagtcagaaagctgtgctgttctgaacagttcactgccttcggtcagcaagtgctt 364
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaccaagtcagaaagctgtgctgttctgaacagttcactgccttcggtcagcaagtgctt 564

                                                                       
Query: 365 agccagtggctaagagtgcttcaggctgtcttctatacagccttgtcctggttgtgctgt 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 agccagtggctaagagtgcttcaggctgtcttctatacagccttgtcctggttgtgttgt 624

                                                                       
Query: 425 tccttcaatcagttgtttaatgagttcatgtgccaagaactgtctcagactctttgatac 484
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tccttcaatcggttgtttaatgagttcatgtgccaagaactgtctcagactctttgatac 684

                                                                       
Query: 485 attaatgaacaaaatagctaaggttctctgccctccccaaacttacagtctagcacatat 544
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attcatgaacaaaatagctaaggttctctgccctccccaaacttacagtctagcacatat 744

                                                                       
Query: 545 gcagataagaaagctatattactaattcccacaacatanaaagggagaggtaagccgggg 604
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 745 gcagataagaaagctatattactaattcccacaacataaaaagggagaggtaagccgggg 804

                                            
Query: 605 agtgggggtgggttgaggtaagctttactggaa 637
           |||||||||||||||||||||||||||||||||
Sbjct: 805 agtgggggtgggttgaggtaagctttactggaa 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no545_f16.g1 MSMg01no545_f16.g1 CHROMAT_FILE:
MSMg01no545_f16.g1 PHD_FILE: MSMg01no545_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:18 2005
         (612 letters)



>mm_chr19_21384021_21385032
          Length = 1012

 Score =  627 bits (324), Expect = 0.0
 Identities = 345/352 (98%)
 Strand = Plus / Minus

                                                                        
Query: 261  agcatgttgggctggtgagatggctcagcgggtaagagcaccgactgttcttccgcaggt 320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 agcatgttgggctggtgagatggctcagcgggtaagagcaccgactgttcttccgcaggt 953

                                                                        
Query: 321  cctgagttcaaatcccacatggtggctcacaaccacccgtaatgagatctgacgccctct 380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 952  cctgagttcaaatcccacatggtggctcacaaccacccgtaatgagatctgacaccctct 893

                                                                        
Query: 381  tctggtgcatctgaagacagctacagtgtacttatttataataataaataaataaatata 440
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || 
Sbjct: 892  tctggtgcatctgaagacagctacagtgtacttatttataataataaataaaaaaaaatg 833

                                                                        
Query: 441  tttattaaaaaaagaaaagaaagcatgtctgactttattttggatggaatttcataaata 500
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 832  tttattaaaaaaagaaaagaaagcatgtctgactttattttggatggaatttcataaaca 773

                                                                        
Query: 501  tatgatgataccttgggtatggaactcatttaaatatcaagttaattttgtgtgtacttt 560
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 772  tatgatgataccttgggtatggaactcatttaaataccaagttaattttgtgtgtacttt 713

                                                                
Query: 561  atgcacaaggctttgggataacttgataatttctggtttcttttctttgtgg 612
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 712  atgcacaaggctttgggataacttgataatttctggttttttttctttgtgg 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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