BAC Information

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BAC

Clone NameMSMg01-545L20
Chromosome19 (Build37)
Map Location 37,182,398 - 37,182,786
singlet/doubletsinglet
Overlap geneCpeb3
Upstream geneAnkrd1, LOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1
Downstream geneMarch5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545L20.T7 (MSMg01no545_l20.b1)MSMg01-545L20.TJ (MSMg01no545_l20.g1)
ACCAG610729AG610730
length716719
length of high quality
(start - end)
657 (60 - 716)507 (70 - 576)
definitionCHROMAT_FILE: MSMg01no545_l20.b1 PHD_FILE: MSMg01no545_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:48 2005CHROMAT_FILE: MSMg01no545_l20.g1 PHD_FILE: MSMg01no545_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTC
ACAAATTCACAAACCTGTAGGGTGTAGTTTCTTCCACTCCACTTTAATGC
TTCTGGGCAGGCTATGCTACCAGCTACCCACCCAGGTTCTCTTGGATCTG
TAGATGAAAGACATACACACATTAGCTCATTGTTAACCTGCCTTACTGAC
TCAGTTGCTGGGTTCTTCTACAATCTTCTGCCGCTAGCATGCCCTTCTCT
TTACTTCTAGCTCAACACCTCTAAATCTTCCCTCAGCTTAGTTGCTCTGT
TACCTTCTATGAAGCCCATTGGTTTTGCTGCCCAAGATGCTTTCGGGCTG
CCTTTATTGGATTTCTTTCCCTTTCTGCCTACATTTTGGAAGATATTCCC
TGCAGCTCTGAGACTGTTCCATTACCCCCACCCCCAGTATATCCATTCTC
TTCCTGCCCTCTCCTCTCTCCTATCCTGTGGGAACCTGGAAGTCCCGCCT
CTTTCTTTCTACCCAGCCATTGGCCACTGGCATCTTTATTGATTGATCAA
GAACTAATTGGGTGAGCTGGGCATGGTGGGTACACGCCTTTAATCCCAGT
TCTCCGGAGGCAGAGGCAGGCGGATTTCTGAGTTGGAGGCCAGCCTGGTC
TGCAAAGGGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTT
GAAAAACCAAAAAAAA
ATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAACAGGGCCTCATGCTTGCACAGTGAGCAC
TTGAACAACTGAGCTCTCCCTCCACCCAATGTGTTGTATCATAACAGTGT
CATCTACAGCTTTCATGTTGGAAAGCCATGTAATTGAGTCACACACACAC
ACACACACACATACACACACACAGAGAATGAGAGAGAGAGAGAGAGAGAG
AGAGGGAGAGAGAGAGAGAGAGAGAGAGCGAGCGAGCGCTGGGCATAGTG
CTATGCTATGGTGCCTCTGTGAGGTCCAGGCCAACTGGAGCTGTATACTG
AGATCCTGTCTCAACAAAAGCAGAAGCAAAACCACCACAACAAAGAAAAG
CCATATGCTTGGATGTTACACTAGATCGTATTAATAAGTATGAAGCACAC
AATGAGCACTCATTTTTAGTTTCTATACTGATAACACCATAGGTATCACA
GATAAAATATTGGTGTTCATCTGTTATAGACTCCAGTGGACAGCATTCTC
ATTTATTCTTTAGGTGAGCTGCTAAGAACCAGTGGTCACTTGTACTTTTG
AATTCTAATCAGATTTTTTTTTTCATGATCTGTCCCCAAATCAGAAATAA
TGGTGGTGGGGGTTTTGTTTGGGAGAACACTGAATAAATTTGAAACACAG
AATACTTTTATTTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_l20.g1 MSMg01no545_l20.g1 CHROMAT_FILE:
MSMg01no545_l20.g1 PHD_FILE: MSMg01no545_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:48 2005
         (507 letters)



>mm_chr19_37181892_37182798
          Length = 907

 Score =  687 bits (355), Expect = 0.0
 Identities = 380/389 (97%), Gaps = 2/389 (0%)
 Strand = Plus / Minus

                                                                       
Query: 121 cacacacacacacacacacacatacacacacacagagaatgagagagagagagagagaga 180
           |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 895 cacacacacacacacacacacacacacacacacacagaatgagagagagagagagagaga 836

                                                                       
Query: 181 gagagggagagagagagagagaga--gagagcgagcgagcgctgggcatagtgctatgct 238
           ||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 835 gagagagagagagagagagagagagcgagagcgagcgagcgctgggcatagtgctatgct 776

                                                                       
Query: 239 atggtgcctctgtgaggtccaggccaactggagctgtatactgagatcctgtctcaacaa 298
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 775 atggtgcctctgtgaggtccaggccagctggagctgtatactgagatcctgtctcaacaa 716

                                                                       
Query: 299 aagcagaagcaaaaccaccacaacaaagaaaagccatatgcttggatgttacactagatc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aagcagaagcaaaaccaccacaacaaagaaaagccatatgcttggatgttacactagatc 656

                                                                       
Query: 359 gtattaataagtatgaagcacacaatgagcactcatttttagtttctatactgataacac 418
            |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 655 atattaataagtatgaagcacacaatgagcacttatttgtagtttctatactgataacac 596

                                                                       
Query: 419 cataggtatcacagataaaatattggtgttcatctgttatagactccagtggacagcatt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 cataggtatcacagataaaatattggtgttcatctgttatagactccagtggacagcatt 536

                                        
Query: 479 ctcatttattctttaggtgagctgctaag 507
           |||||||||||||||||||||||||||||
Sbjct: 535 ctcatttattctttaggtgagctgctaag 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)