Query= MSMg01no545_p22.b1 MSMg01no545_p22.b1 CHROMAT_FILE:
MSMg01no545_p22.b1 PHD_FILE: MSMg01no545_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:08 2005
(677 letters)
>mm_chr19_5557383_5558453
Length = 1071
Score = 1259 bits (651), Expect = 0.0
Identities = 665/673 (98%), Gaps = 6/673 (0%)
Strand = Plus / Plus
Query: 5 gaattccagatcctcccgcttccaccttccaagtatggggattacagatgtgcacaccct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagatcctcccgcttccaccttccaagtatggggattacagatgtgcacaccct 264
Query: 65 acctagcttccgagctttgggcatgtgttgtgctcccagaacaggtcagcgagccagatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acctagcttccgagctttgggcatgtgttgtgctcccagaacaggtcagcgagccagatt 324
Query: 125 attagccagggggaggcttggaaggagggggacctggagcttagaagaggcacctggaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attagccagggggaggcttggaaggagggggacctggagcttagaagaggcacctggaat 384
Query: 185 tctcctggagttccagctttcaggctcagtctgtccctaggtcccttccttttctgtgac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctcctggagttccagctttcaggctcagtctgtccctaggtcccttccttttctgtgac 444
Query: 245 ttaactcatcaaggacaagccttagaggaatggctccaaggcaagtccttgaacctccca 304
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcactcatcaaggacaagccttagaggaatggctccaaggcaagtccttgaacctccca 504
Query: 305 tagagcaggaatggtattcgacccccagctacaagggcctgtttcattctaaaaataata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagagcaggaatggtattcgacccccagctacaagggcctgtttcattctaaaaataata 564
Query: 365 ataacccaccatccttcctgtcaccagagtaaacaaccaagtagagagtccagtaccaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ataacccaccatccttcctgtcaccagagtaaacaaccaagtagagagtccagtaccaga 624
Query: 425 agaggtggtgggtggtggggaggagccaagtgagtccccgaactgcgctggctctggtgg 484
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 agaggtggtgggtggtggggaggagccaagtgagtccccgaactgcgctgg------tgg 678
Query: 485 agaacggagtcattgccttccttgcctgccttctggtgcgggctaccagctctccccaga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agaacggagtcattgccttccttgcctgccttctggtgcgggctaccagctctccccaga 738
Query: 545 gctgaaggaatgaccatgactgtcctgggagatgactctggaagcttgtgggaaggatcg 604
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gctgaaggaatggccatgactgtcctgggagatgactctggaagcttgtgggaaggatcg 798
Query: 605 tgaagggatggtgaggggtatctcccaggtcaggcccagcagcccagcatcctcagtatg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tgaagggatggtgaggggtatctcccaggtcaggcccagcagcccagcatcctcagtatg 858
Query: 665 tagtaaactctgg 677
|||||||||||||
Sbjct: 859 tagtaaactctgg 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1071
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1061
Effective search space: 707687
Effective search space used: 707687
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_p22.g1 MSMg01no545_p22.g1 CHROMAT_FILE:
MSMg01no545_p22.g1 PHD_FILE: MSMg01no545_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:08 2005
(639 letters)
>mm_chr19_5734517_5735555
Length = 1039
Score = 1205 bits (623), Expect = 0.0
Identities = 635/639 (99%)
Strand = Plus / Minus
Query: 1 cacatttaacccaagcacccccaccccagacaattcaactggaagagtcaggtaggagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 cacatttaacccaagcacccccaccccagacaattcaactggaagagtcaggtaggagaa 608
Query: 61 gatgaaggcatttgtattcgattcctcgcagctgagggactcaaaaagagaggagtcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gatgaaggcatttgtattcgattcctcgcagctgagggactcaaaaagagaggagtcaaa 548
Query: 121 aaggactaaaaaactcagcacagccgttctacccatgacccagagcccatgtcagtccga 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 547 aaggactcaaaaactcagcacagccgttctacccatgacccagagcccatgtcggtccga 488
Query: 181 caagggagccctgatgatctggttcagcactgagctcagatctcctaggcgctcatttga 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 487 caagggagccctgatgatctggttcagcactgagctcagatctcctaggtgctcatttga 428
Query: 241 ttccacctgaggctggccagagaccattgtgagtgtgcagtgccatgtcctggaatggtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttccacctgaggctggccagagaccattgtgagtgtgcagtgccatgtcctggaatggtg 368
Query: 301 tgtgtgaagcctggaattttccaaattgctccagctcaatctacacatttctcagttgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgtgtgaagcctggaattttccaaattgctccagctcaatctacacatttctcagttgat 308
Query: 361 cattacaaaggatatggccgagaggagtccttcccttggcacagttaaacgcagaggtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cattacaaaggatatggccgagaggagtccttcccttggcacagttaaacgcagaggtga 248
Query: 421 ggttgcttcactgtttttgtaggagtgtcctatgtgcagatagagtgcatgtcagaagag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ggttgcttcactgtttttgtaggagtgtcctatgtgcagatagagtgcatgtcagaagag 188
Query: 481 ggcatcagataccattataaaagattatgagcagccatgtggtagctgaaaccaaggacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ggcatcagataccattataaaagattatgagcagccatgtggtagctgaaaccaaggacc 128
Query: 541 agaagtccttgaactcaggacctctggaagagcagccagtactcttaaccacggagtcac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 agaagtccttgaactcaggacctctggaagagcagccagtactcttaaccacggagtcac 68
Query: 601 ctctccagcccgcagaaatctttttgagttgatttgagg 639
||||||||||||||||||||||||||||||| |||||||
Sbjct: 67 ctctccagcccgcagaaatctttttgagttggtttgagg 29
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
