Query= MSMg01no546_c19.b1 MSMg01no546_c19.b1 CHROMAT_FILE:
MSMg01no546_c19.b1 PHD_FILE: MSMg01no546_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:23 2005
(479 letters)
>mm_chr19_33491487_33492366
Length = 880
Score = 876 bits (453), Expect = 0.0
Identities = 463/467 (99%), Gaps = 3/467 (0%)
Strand = Plus / Minus
Query: 5 gaattctgggtgtttaggtagggaacaattccatgtgatctctgcttttgccttaaaaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaattctgggtgtttaggtagggaacaattccatgtgatctctgcttttgccttaaaaga 408
Query: 65 atgtcaaagagtttaatggaaagcagacatttgcctacaaccattctcaattacttttta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 atgtcaaagagtttaatggaaagcagacatttgcctacaaccattctcaattacttttta 348
Query: 125 tttaagcctgtattccaatttttgtgtgtgtgcatgattttgtgtatgaatcatgtatgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tttaagcctgtattccaatttttgtgtgtgtgcatgattttgtgtatgaatcatgtatgt 288
Query: 185 tcatgtacaggtatttatgtgagggtcagagcacaaattcaagtgtcattccttagacac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tcatgtacaggtatttatgtgagggtcagagcacaaattcaagtgtcattccttagacac 228
Query: 245 aatttgtttgtctga-ttgagaatctctaagtaaggcaggctgagtgctcagccaaatta 303
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 aatttgtttgtctgacttgagaatctctaagtaaggcaggctgagtgctcagccaaatta 168
Query: 304 tttatttcttctcctgcattgctgggatttcaggtagtcaacatcatacctgg--ctttt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 167 tttatttcttctcctgcattgctgggatttcaggtagtcaacatcatacctggttttttt 108
Query: 362 ttttaaaaggtgggtcctgtggatcagactcactcctcaattgctttccaataaacttcc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ttttaaaaggtgggtcctgtggatcagactcactcctcaattgctttccaataaacttcc 48
Query: 422 tcctcagccgatactgttgataatttattagaggaaagactgatagg 468
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 tcctcagccgatactgttgataatttattagaggaaagactgatagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 880
Length adjustment: 10
Effective length of query: 469
Effective length of database: 870
Effective search space: 408030
Effective search space used: 408030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_c19.g1 MSMg01no546_c19.g1 CHROMAT_FILE:
MSMg01no546_c19.g1 PHD_FILE: MSMg01no546_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:23 2005
(334 letters)
>mm_chr19_33314141_33314874
Length = 734
Score = 615 bits (318), Expect = e-180
Identities = 330/334 (98%)
Strand = Plus / Plus
Query: 1 tgggttttagattatttatagtcatggctttacagcctcatctctgactataattccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggttttagattatttatagtcatggctttacagcctcatctctgactataattccttc 260
Query: 61 tcatatgaaatcccaaaatatatgtatagctttttcgcatgggaaaataacaaatgcaga 120
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tcatatgaaatctcaaaatatatgtatagatttttcgcatgggaaaataacaaatgcaga 320
Query: 121 aagattcttttgaaatttataggtaattttttcactagctgcctgttggtcataactctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagattcttttgaaatttataggtaattttttcactagctgcctgttggtcataactctt 380
Query: 181 cctttaaaaagtactataaatatttccataactcttttgtaaatgaatgacccttgccat 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttcaaaaagtactataaatatttccataactcttttgtaaatgaatgacccttgccat 440
Query: 241 caagggatccagtcagttaaccaatcttggcttttaaattgattttaatgactttaccag 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 caagggatccagtcagttaaccaatcttggcttttaaattgattttaacgactttaccag 500
Query: 301 attgcctctgtggtctcacatctactgcagtgaa 334
||||||||||||||||||||||||||||||||||
Sbjct: 501 attgcctctgtggtctcacatctactgcagtgaa 534
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space: 235625
Effective search space used: 235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
