Query= MSMg01no547_e01.b1 MSMg01no547_e01.b1 CHROMAT_FILE:
MSMg01no547_e01.b1 PHD_FILE: MSMg01no547_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:50 2005
(574 letters)
>mm_chr19_18596769_18597742
Length = 974
Score = 1042 bits (539), Expect = 0.0
Identities = 563/571 (98%)
Strand = Plus / Plus
Query: 4 ctggattgcacatgcgcatctagtctttgataccctaagcgagccaaataattaagcatt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctggattgcacatgcgcatctagtctttgataccctaagcgagccaaataattaagcatt 263
Query: 64 gtcaataactaccatcagtctctgacaaacatctgtactgcactcttaaactcactttgc 123
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggcaataactaccatcagtccctgacaaacatctgtactgcactcttaaactcactttgc 323
Query: 124 tcctggttaactccaaaccatttaaattatctaatatttttatcaataaatacaagcaaa 183
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 324 tcctggttaactccaaaccatttaaattatctaatatttatatcaataaatacaagcaaa 383
Query: 184 gtataaactgagatcaaaacccactagctcagccagttagctatattttcttaattatat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtataaactgagatcaaaacccactagctcagccagttagctatattttcttaattatat 443
Query: 244 acaaactatctctttaaaagcctgaccttacaactaaactgctagctctttagaaatctc 303
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acaaaatatctctttaaaagcctgaccttacaactaaactgctagctctttagaaatctc 503
Query: 304 ttcctctctgtgtcattgtagcaaagtagtatagctttctcttgagcgcctccaaactcg 363
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 504 ttcctctctgtgtcattgtagcaaagtagtatagctttctcttgagctcctccaaactcg 563
Query: 364 agagaaccccttagcagtctttcttagaatactattttacccgtgccctgccagctgctt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agagaaccccttagcagtctttcttagaatactattttacccgtgccctgccagctgctt 623
Query: 424 tccattattcctgcaagcccaaagagaaaatccttcttatctcttaccaggaggtctttc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 624 tccattattcctgcaagcccaaagagaaaatccttcttatctcttaccaggagctctttc 683
Query: 484 caaaattactcctcaaagctgatgggggagggaggagctctatcaaaactccaattgctt 543
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caaaaagactcctcaaagctgatgggggagggaggagctctatcaaaactccaattgctt 743
Query: 544 ataaaaagaagtctctagctatgcttttctt 574
|||||||||||||||||||||||||||||||
Sbjct: 744 ataaaaagaagtctctagctatgcttttctt 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_e01.g1 MSMg01no547_e01.g1 CHROMAT_FILE:
MSMg01no547_e01.g1 PHD_FILE: MSMg01no547_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:50 2005
(645 letters)
>mm_chr19_18797364_18798408
Length = 1045
Score = 1083 bits (560), Expect = 0.0
Identities = 621/649 (95%), Gaps = 17/649 (2%)
Strand = Plus / Minus
Query: 1 tcgagatacatgcgtgatcatggcatgtgatgggcaaatcatttgtgatgaacaaatctc 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1017 tcgagatacatgcgtgatcatggcatgtgatgaataaatcatttgtgatgaacaaatctc 958
Query: 61 tatatatctttatatatcttcttactgcattgttctattttggacatggagtgaccctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 tatatatctttatatatcttcttactgcattgttctattttggacatggagtgaccctct 898
Query: 121 tatctcatttgactggttttagtttggattttccttttcatatatgagaatcactatggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 tatctcatttgactggttttagtttggattttccttttcatatatgagaatcactatggc 838
Query: 181 tacttaggttgacttaaattttttattctcaatttctatatgtctcagtgggtatatagg 240
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
Sbjct: 837 tacttaggttgacttaaatttttgattctcaatttctatatgtctcattgggtatataag 778
Query: 241 ttggatcttggtttt----gttgttgttgttcatttgtttttttgtgtttttgttgtttt 296
||| ||||| ||||| |||||||||||||||||| ||||||||||||| ||| |
Sbjct: 777 ttgtatcttagtttttttggttgttgttgttcatttg-ttttttgtgtttt--ttg---t 724
Query: 297 tgttttgttttgttttgtttaattccagtcagtgcatataagtacggccatttgtattca 356
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tgt----ttttgttttgtttaattccagtcagtgcatataagtacggccatttgtattca 668
Query: 357 agtttactattgaggggtttgctattactaaagcttttgttggcagttttagctgtttgt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 agtttactattgaggggtttgctattactaaagcttttgttggcagttttagctgtttgt 608
Query: 417 tttgttggtggtccttctgagaattttagagatttgctgcattaacatagtttattccta 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tttgttggtggtccttctgagaattttagagatttgctgcattaacatagtttattccta 548
Query: 477 cttgactctctttggaccatctgttcatctctgtggtgctttgaacatgcttgacccatg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 547 cttgactctctttggaccatctgttcatctctgtggtgctttgaacatgcttggcccatg 488
Query: 537 ggaagtggcactgtttangaggtgtggtcctgttggaggaattgtatcactgtatagatg 596
|||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 487 ggaagtggcactatttaggaggtgtggtcctgttgga---attgtatcactgtatagatg 431
Query: 597 ggctttaaggtctcctaatacttaagctcaacccagtgtggaaagagag 645
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ggctttaaggtctcctaatacttaagctcaacccagtgtggaaagagag 382
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
