BAC Information

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BAC

Clone NameMSMg01-548P05
Chromosome19 (Build37)
Map Location 50,690,351 - 50,690,693
singlet/doubletsinglet
Overlap geneSorcs1
Upstream geneLOC629448, Siah1-ps1, EG433251
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548P05.T7 (MSMg01no548_p05.b1)MSMg01-548P05.TJ (MSMg01no548_p05.g1)
ACCAG613174AG613175
length762740
length of high quality
(start - end)		348 (45 - 392)577 (71 - 647)
definitionCHROMAT_FILE: MSMg01no548_p05.b1 PHD_FILE: MSMg01no548_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:31:01 2005CHROMAT_FILE: MSMg01no548_p05.g1 PHD_FILE: MSMg01no548_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:31:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGAATCCATAGCCTATGAGACTCTTCATTCCACGCTTATTGAAGA
TCTGCTATCTACCACATATGAATGCCAAGGAATGAAAAGTTTAGAAGCTC
AGCCTGTGGAATTCACATTACATCACAGTGACAGTTTGGATGGTATGAGG
ACCTCAAAGGTTTTGCTTTGTTGAAGAGATCCAAGTCCACAAAAATTCTT
GTAGTATAAGAGGTAAATAACCACGTTTACTTAAACTTGAAGAAATACGG
GTGGGAGTGGTATAGTGCACAGAGACAGAAAGAGGTAGAGCATGTGCACA
CGAGTGCACGCGCGCACGCACACACACACACACACACACACTCACACACA
CACACTCACTCAGATAGAGATTCAAGTTTAACATGCTTTCTGCTCTTAGA
CTTTAAAAAACATCAGATCTCAAGAAACTCTTAAACTATCACCAAAATCT
AAGGAAGCCCATACACCATCTTTAGGTATCCACATGGGAACGACAGGTTG
GAGAATCATCATACAGTGACTTGAGGTGACTGAATGTGGGTGGTCTTATA
AATAGAATGGAGGTCATGATCATTCCCTCAAGGTAGTATTTGATGGTTGG
TTTTGTAAAACCCCCATAAAACCCTGGTCATAAGCAACATATTAAGTCCC
CCTCGTTTTTTTGTATTTCTGTTTCGGCTTTTGATTTTAGGTTTTCGCGT
TGAGGTTTTTTC

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTGGACCTTATCTTGTGTATTCTGTATGG
TCTTTTTTTTCTTTTTCTTTTTCTCTTTCTTTTTCCTTTTCTTTTCTTTT
CTCCTCTTTTCTTTTCTGTTTTCTATATATATTTTTTGGCTAATATCCAC
CTATTAGTGAGTACATACCATACCATGCATGTCCTTTTGGTCTGAGTTAC
CTCACTTAGGATGATATTTTCTAGTTCCATCCATTTACCTGCAAAACTCA
GGATGTCCTCATTCTTAATAGCTGAGTAGTATTCCATTGTGTAAATGAAC
CACATTTTCTGCATCCATTCTTCTGTCCTGGGACATATAGGTTGTTTCAA
GCTTTTGGCAGTCACAAATAAGGCCACTATGAACACATGCTCCTTTGGCT
TGGTGGGGAATCTTTTGTGTATATTCCCAAGACAGATATAGCTGGGTCTT
CAGGTAGATCTATTTCCAAATTTCTGAAGAACCTTCTATGGAACACTCAC
AAAAGGGGATCACGACTGCCCTGCAAAAGACCCAAAAAGCAGCTGAAAGT
CTCAGATGCAGTTATTTATACTCAAACAATGGACAGAAGCAGCTGACCCC
GTTGTTGAATTANGGAAGGCTGAAAGAAGCTGAGAAGAAAGTCTATTCTG
TAGGAGGACCAGCAGTCTTAATCAATCTGGACCCCCTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_p05.b1 MSMg01no548_p05.b1 CHROMAT_FILE:
MSMg01no548_p05.b1 PHD_FILE: MSMg01no548_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:01 2005
         (348 letters)



>mm_chr19_50690147_50690894
          Length = 748

 Score =  663 bits (343), Expect = 0.0
 Identities = 343/343 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagaatccatagcctatgagactcttcattccacgcttattgaagatctgctat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagaatccatagcctatgagactcttcattccacgcttattgaagatctgctat 264

                                                                       
Query: 65  ctaccacatatgaatgccaaggaatgaaaagtttagaagctcagcctgtggaattcacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaccacatatgaatgccaaggaatgaaaagtttagaagctcagcctgtggaattcacat 324

                                                                       
Query: 125 tacatcacagtgacagtttggatggtatgaggacctcaaaggttttgctttgttgaagag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacatcacagtgacagtttggatggtatgaggacctcaaaggttttgctttgttgaagag 384

                                                                       
Query: 185 atccaagtccacaaaaattcttgtagtataagaggtaaataaccacgtttacttaaactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atccaagtccacaaaaattcttgtagtataagaggtaaataaccacgtttacttaaactt 444

                                                                       
Query: 245 gaagaaatacgggtgggagtggtatagtgcacagagacagaaagaggtagagcatgtgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaagaaatacgggtgggagtggtatagtgcacagagacagaaagaggtagagcatgtgca 504

                                                      
Query: 305 cacgagtgcacgcgcgcacgcacacacacacacacacacacac 347
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cacgagtgcacgcgcgcacgcacacacacacacacacacacac 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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