BAC Information

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BAC

Clone NameB6Ng01-001F12
Chromosome2 (Build37)
Map Location 128,453,750 - 128,561,675
singlet/doubletdoublet
Overlap geneAnapc1, Mertk
Upstream geneMal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11, LOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355
Downstream geneTmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001F12.bB6Ng01-001F12.g
ACCDH839694DH839695
length1,2391,044
definitionDH839694|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F12, 5' end.DH839695|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,453,750 - 128,454,969)(128,560,626 - 128,561,675)
sequence
gaattcttacagctaacatttctttacccatccttgttggctcttttaat
ttttattggtgcaccaagaattcacaggttgggccctgtccatgataggc
aaatgctttatgatttagctacagccccaacctttaagtattcataattc
caaattaataaaaagaagcaactgccacaaactatattaagaaataccca
tcttgctcataatctctaccacacaaggcaccacataagtatagcaatag
ctgaagacaacatggcaagggacttcaatcctctgctgcaggtgccatca
atacagttctaattaatgttctatccagttatttactatgaaaaatgaca
aattccaacatttgtatgaaaaaagccaacaagagaaacacgtagttttc
aaagtgaacaaacagataacatatatagctctccctcatgaactctttta
ttaaaggacaaacagaacaaaaacactcatcaccttcctcctcccaaaaa
gagaaggcccagggccatgtggtgggccaagtggaagccatagttcatct
ctccaccagtcttcatgtgcagaaagcgacagagctgcaacaccttcagg
ttcccagagccagccatcaccatggcaagagacagcaggaccacactcag
gcaggtttcgaggttatagggccctgtctggtgacacaaaaacattacct
agtgttacaactttcttcattaccaaaaatatctgaacttggaagattac
aaatgtttgtaattttcaaactaaatcttaaaaaaaaaaagaacactatg
gagcaatctaacatatacaacccaccacctactgaaaactgatattattc
cttatagacatcacacttagaaattctttctgtatatacatatatatatt
catagatgaaaatcagaaacttactaaacatgtttaatctttttaataac
ttataagcaattttcaaacacaaaaagccttaatacagcatgatccttgc
tacatccaataatataaaaagcatattgggacatgccattaaccttaaat
acttgggcaatttttgatattttctaattttcttttccaataataaaaac
tactgcataggtcttatgccactaaccagaaattaatcttggaattcttc
tttgttataaaagaagttatgtcttatgaaattaactgtatactctcact
aggtttggttttttaaggacatcctggcattcatgtaac
gaattccatagatctcaagatcctgagcaattgttctatatcccaaatgg
ccttgaaactaggtcctgcttctaccttgcctggtctctaagtattgtgc
agaatattcacctgactgcctaaaattgcaactgtgaaaacagagggccg
gtatcctcttgtctggtttggaattttttggtgtccgagttatcttttct
gttttagatttattctccctccaccccccaccccgtgtatgctcacatgt
atgctcacatgtatgctcacatgtgtacagatgccagaagaggctgctga
caccacggagctgggctttcaggtggttgtgggttacctagcatgagtgc
tgagaaccaaacttggtgctcttaaccagagcctgtccagccccacctaa
accgtcactctggaaggcaagcatcactgcctttacctcagacacctatt
ctgtgctcaggtggtggtgagttggggagggaggcacagactggggacat
gggactgtctccttttttcctttctgctgggatggtcaggccagcactag
tacatagaaatgtgtcttttgttattagttatcttagctttgctttgctt
atgttccagctggaacgcctggaaaatgtccaacccagctggcacaggcc
tgtgcctgtggtctcagccctctgaggcaggagggctgtgggtttgaggt
gagcatgatgaagtacactctgagatctcgtcacaaaacaaaaaagcaac
gttggctcctactgccttctttccacctctgcagtgtgtttacaatcagc
aagttatacaacatacataaaagctgcattggagacaggcaaaatggctc
agagggtaaaagcgattgtctgtcaggcctggggccctgggttcattcct
gggactgagcagggaaccaagacaaaatcagggacagggactgtgagcaa
agcacagttctgacagtttcatgaccatgagaggaagtagagacagtctt
tcctttcagagttgaaactagcaagctagcagaaaaaaataagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_128453750_128454969
seq2: B6Ng01-001F12.b_45_1283

seq1  GAATTCTTACAGCTAACATTTCTTTACCCATCCTTGTTGGCTCTTTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACAGCTAACATTTCTTTACCCATCCTTGTTGGCTCTTTTAAT  50

seq1  TTTTATTGGTGCACCAAGAATTCACAGGTTGGGCCCTGTCCATGATAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGGTGCACCAAGAATTCACAGGTTGGGCCCTGTCCATGATAGGC  100

seq1  AAATGCTTTATGATTTAGCTACAGCCCCAACCTTTAAGTATTCATAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTTATGATTTAGCTACAGCCCCAACCTTTAAGTATTCATAATTC  150

seq1  CAAATTAATAAAAAGAAGCAACTGCCACAAACTATATTAAGAAATACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAATAAAAAGAAGCAACTGCCACAAACTATATTAAGAAATACCCA  200

seq1  TCTTGCTCATAATCTCTACCACACAAGGCACCACATAAGTATAGCAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTCATAATCTCTACCACACAAGGCACCACATAAGTATAGCAATAG  250

seq1  CTGAAGACAACATGGCAAGGGACTTCAATCCTCTGCTGCAGGTGCCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACAACATGGCAAGGGACTTCAATCCTCTGCTGCAGGTGCCATCA  300

seq1  ATACAGTTCTAATTAATGTTCTATCCAGTTATTTACTATGAAAAATGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTCTAATTAATGTTCTATCCAGTTATTTACTATGAAAAATGACA  350

seq1  AATTCCAACATTTGTATGAAAAAAGCCAACAAGAGAAACACGTAGTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAACATTTGTATGAAAAAAGCCAACAAGAGAAACACGTAGTTTTC  400

seq1  AAAGTGAACAAACAGATAACATATATAGCTCTCCCTCATGAACTCTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAACAAACAGATAACATATATAGCTCTCCCTCATGAACTCTTTTA  450

seq1  TTAAAGGACAAACAGAACAAAAACACTCATCACCTTCCTCCTCCCAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGACAAACAGAACAAAAACACTCATCACCTTCCTCCTCCCAAAAA  500

seq1  GAGAAGGCCCAGGGCCATGTGGTGGGCCAAGTGGAAGCCATAGTTCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCCCAGGGCCATGTGGTGGGCCAAGTGGAAGCCATAGTTCATCT  550

seq1  CTCCACCAGTCTTCATGTGCAGAAAGCGACAGAGCTGCAACACCTTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCAGTCTTCATGTGCAGAAAGCGACAGAGCTGCAACACCTTCAGG  600

seq1  TTCCCAGAGCCAGCCATCACCATGGCAAGAGACAGCAGGACCACACTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAGCCAGCCATCACCATGGCAAGAGACAGCAGGACCACACTCAG  650

seq1  GCAGGTTTCGAGGTTATAGGGCCCTGTCTGGTGACACAAAAACATTACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTTCGAGGTTATAGGGCCCTGTCTGGTGACACAAAAACATTACCT  700

seq1  AGTGTTACAACTTTCTTCATTACCAAAAATATCTGAACTTGGAAGATTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTACAACTTTCTTCATTACCAAAAATATCTGAACTTGGAAGATTAC  750

seq1  AAATGTTTGTAATTTTCAAACTAAATCTTAAAAAAAAAAAGAACACTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTGTAATTTTCAAACTAAATCTTAAAAAAAAAAAGAACACTATG  800

seq1  GAGCAATCTAACATATACAACCCACCACCTACTGAAAACTGATATTATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATCTAACATATACAACCCACCACCTACTGAAAACTGATATTATTC  850

seq1  C-TATAGACATCACACTCAGAAATTC-TTCTGTATATACATATATATATT  898
      | ||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  CTTATAGACATCACACTTAGAAATTCTTTCTGTATATACATATATATATT  900

seq1  CATAGATGAAAATCAGACAC-TACTATACATG-TTAACCCTTTTAATAAC  946
      ||||||||||||||||| || ||||| ||||| |||| | ||||||||||
seq2  CATAGATGAAAATCAGAAACTTACTAAACATGTTTAATCTTTTTAATAAC  950

seq1  TTATAAGCAATTTTCAAACACAAAAAGCCTT-ATACAGCATGAT-CTTGC  994
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  TTATAAGCAATTTTCAAACACAAAAAGCCTTAATACAGCATGATCCTTGC  1000

seq1  TACATCCAAT-ATAT-AAGAGCATAT--GGACATGCCAT--AACTTAAAT  1038
      |||||||||| |||| || |||||||  |||||||||||  | |||||||
seq2  TACATCCAATAATATAAAAAGCATATTGGGACATGCCATTAACCTTAAAT  1050

seq1  ACTTGGGCA--TTTTGATA-TTTCTAATTTTC-TTTCACATTATAAAAAC  1084
      |||||||||  |||||||| |||||||||||| ||||  || ||||||||
seq2  ACTTGGGCAATTTTTGATATTTTCTAATTTTCTTTTCCAATAATAAAAAC  1100

seq1  TACTGCATAGGTC-TATGCCACTAACCAGGATATAAATCTTGGAGT--CT  1131
      ||||||||||||| |||||||||||||| || || ||||||||| |   |
seq2  TACTGCATAGGTCTTATGCCACTAACCA-GAAATTAATCTTGGAATTCTT  1149

seq1  CCTTGTTATAAGAGAAGTAATGTCTATAGAA--TGACTGTATA--CTCAC  1177
      | ||||||||| |||||| ||||||   |||  | ||||||||  |||||
seq2  CTTTGTTATAAAAGAAGTTATGTCTTATGAAATTAACTGTATACTCTCAC  1199

seq1  TAGGTGTTTGGTTTTTTTAAAGGACATTCTGGCATTCA-GTAAC  1220
      |||  ||||||||||||  |||||||| |||||||||| |||||
seq2  TAG--GTTTGGTTTTTT--AAGGACATCCTGGCATTCATGTAAC  1239

seq1: chr2_128560626_128561675
seq2: B6Ng01-001F12.g_70_1113 (reverse)

seq1  ACTTTTTTTTTTCTTGCTAGCTTGCTTAGTTTTCAACTCTGAAAGAAAGC  50
      |||| |||||||| ||||||||||| ||| ||||||||||||||| ||  
seq2  ACTTATTTTTTTC-TGCTAGCTTGC-TAG-TTTCAACTCTGAAAGGAAAG  47

seq1  CCTGTCTCTACTTCCTCTCATGGTCATGAAACTGTCAGGACTGTGCTTTG  100
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTGTCTCTACTTCCTCTCATGGTCATGAAACTGTCAGAACTGTGCTTTG  97

seq1  CCTCACAGTCCCTGTCCCTGATTTTTGTCTTGGTTCCCTGCTCAGTCCCA  150
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  -CTCACAGTCCCTGTCCCTGA-TTTTGTCTTGGTTCCCTGCTCAGTCCCA  145

seq1  GGGATTGAACCCAGGGCCCCAGGCCTGACAGACAATCGCTTCTACCCTCT  200
       ||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  -GGAATGAACCCAGGGCCCCAGGCCTGACAGACAATCGCTTTTACCCTCT  194

seq1  GAGCCATTTTGCCTGTCTCCAATGCAGCTTTTATGTATGTTGTATAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATTTTGCCTGTCTCCAATGCAGCTTTTATGTATGTTGTATAACTT  244

seq1  GCTGATTGTAAACACACTGCAGAGGTGGAAAGAAGGCAGTAGGAGCCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTGTAAACACACTGCAGAGGTGGAAAGAAGGCAGTAGGAGCCAAC  294

seq1  GTTGCTTTTTTGTTTTGTGACGAGATCTCAGAGTGTACTTCATCATGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTTTTGTTTTGTGACGAGATCTCAGAGTGTACTTCATCATGCTC  344

seq1  ACCTCAAACCCACAGCCCTCCTGCCTCAGAGGGCTGAGACCACAGGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAACCCACAGCCCTCCTGCCTCAGAGGGCTGAGACCACAGGCACA  394

seq1  GGCCTGTGCCAGCTGGGTTGGACATTTTCCAGGCGTTCCAGCTGGAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTGCCAGCTGGGTTGGACATTTTCCAGGCGTTCCAGCTGGAACAT  444

seq1  AAGCAAAGCAAAGCTAAGATAACTAATAACAAAAGACACATTTCTATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGCAAAGCTAAGATAACTAATAACAAAAGACACATTTCTATGTA  494

seq1  CTAGTGCTGGCCTGACCATCCCAGCAGAAAGGAAAAAAGGAGACAGTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCTGGCCTGACCATCCCAGCAGAAAGGAAAAAAGGAGACAGTCCC  544

seq1  ATGTCCCCAGTCTGTGCCTCCCTCCCCAACTCACCACCACCTGAGCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCCAGTCTGTGCCTCCCTCCCCAACTCACCACCACCTGAGCACAG  594

seq1  AATAGGTGTCTGAGGTAAAGGCAGTGATGCTTGCCTTCCAGAGTGACGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTGTCTGAGGTAAAGGCAGTGATGCTTGCCTTCCAGAGTGACGGT  644

seq1  TTAGGTGGGGCTGGACAGGCTCTGGTTAAGAGCACCAAGTTTGGTTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGGGGCTGGACAGGCTCTGGTTAAGAGCACCAAGTTTGGTTCTCA  694

seq1  GCACTCATGCTAGGTAACCCACAACCACCTGAAAGCCCAGCTCCGTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCATGCTAGGTAACCCACAACCACCTGAAAGCCCAGCTCCGTGGTG  744

seq1  TCAGCAGCCTCTTCTGGCATCTGTACACATGTGAGCATACATGTGAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCCTCTTCTGGCATCTGTACACATGTGAGCATACATGTGAGCAT  794

seq1  ACATGTGAGCATACACGGGGTGGGGGGTGGAGGGAGAATAAATCTAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGAGCATACACGGGGTGGGGGGTGGAGGGAGAATAAATCTAAAAC  844

seq1  AGAAAAGATAACTCGGACACCAAAAAATTCCAAACCAGACAAGAGGATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGATAACTCGGACACCAAAAAATTCCAAACCAGACAAGAGGATAC  894

seq1  CGGCCCTCTGTTTTCACAGTTGCAATTTTAGGCAGTCAGGTGAATATTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCTCTGTTTTCACAGTTGCAATTTTAGGCAGTCAGGTGAATATTCT  944

seq1  GCACAATACTTAGAGACCAGGCAAGGTAGAAGCAGGACCTAGTTTCAAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATACTTAGAGACCAGGCAAGGTAGAAGCAGGACCTAGTTTCAAGG  994

seq1  CCATTTGGGATATAGAACAATTGCTCAGGATCTTGAGATCTATGGAATTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGGGATATAGAACAATTGCTCAGGATCTTGAGATCTATGGAATTC  1044