BAC Information

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BAC

Clone NameB6Ng01-002A11
Chromosome2 (Build37)
Map Location 45,517,384 - 45,691,137
singlet/doubletdoublet
Overlap geneLOC100041337, LOC666604
Upstream geneGtdc1, Zeb2, LOC100042661
Downstream geneLOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002A11.bB6Ng01-002A11.g
ACCDH840177DH840178
length566887
definitionDH840177|Mus musculus domesticus DNA, BAC clone: B6Ng01-002A11, 5' end.DH840178|Mus musculus domesticus DNA, BAC clone: B6Ng01-002A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,690,566 - 45,691,137)(45,517,384 - 45,518,136)
sequence
tactctgcaatacatagcaacttcaatcatggcaacagtagaaagtacag
tttagaaacaagaacatggtaactacaaatcatttttccacaggatggaa
taagaacccatttctgtggtactcaagccagctctttaatgaaattacac
tatcgacaccaaatatcacaaaacactttctgtatggtgaaggatgcaaa
ttaaccatttaagttacgaaggccttggtatacttcctctcctctaaatg
caactttaacctgtttaaaactttttaatattgtacaagttgtttctatg
gttccttgatgagctatatgaagaaacacctgaagatctggtgaggcgga
taatctgttcttcagaaaggactacattcactgcccagaaaccaaattag
gtggctcatagtgacctgtatgtccaacccttatgaactgacatcttctt
ctggtctccacaggtacctgcacacaaagaaataaacacacgcacacaca
cacacacacacacacacacacacacacacacacacagagagagagagagg
gggagggagggaggga
gaattcctgtttgtagtttttgtaaactattcagtgttcaaggtatagtg
atttacatgcctaataacacagataatatggactgttcgttcctcggcat
aatgaacattcactgtcttattttaaatattaacccaagatatttagcag
tggaaatgacagagacaagaaagagcttaatattttgatcaagaaagaaa
acacaccaatgtacaaaagagaaataaattgattaaaaagcatacatagt
cttaattctacaggctgagtgttgctgttcacataatgatattttatcta
gcaaggtgatggtatcggaaataatacctttgatgggtaattagatcaca
ggagctgagctgagctttcataattaggattagtgactatttttttatga
gactccaaggaagcaagtcagcctcccactgctaacagcaaaaggattcc
ccactggaggactgagaacagtccctcaccagaccttgaatctggcacca
ttgattgggttttctagaactgtgtgctatataacatctattcatactat
acatagataatgttattttgctttacctacctatcttagttagggttact
gttgttatgatgaaataacttgcccaagggaactggggaggaaagggttt
atttggcttacactttgatatcattgttcatcattaaaggaagtcaagac
aggaattcaaaacaggcagtatcctggagtcaggggcttatgcagaggcc
atggaggagtgctgtttatagacttgctcctcatagcttgctcagcctgt
tttcttacagaaaccaggacaccaggacataggtggctccacccacaaat
atgagtcactaagaaaatgccttatagatctggctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45690566_45691137
seq2: B6Ng01-002A11.b_46_617 (reverse)

seq1  TCCCTCCCTCCCTCCCCCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCCCTCCCCCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTG  50

seq1  TGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTTTATTTCTTTGTGTGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTTTATTTCTTTGTGTGCAGG  100

seq1  TACCTGTGGAGACCAGAAGAAGATGTCAGTTCATAAGGGTTGGACATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTGGAGACCAGAAGAAGATGTCAGTTCATAAGGGTTGGACATACA  150

seq1  GGTCACTATGAGCCACCTAATTTGGTTTCTGGGCAGTGAATGTAGTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTATGAGCCACCTAATTTGGTTTCTGGGCAGTGAATGTAGTCCTT  200

seq1  TCTGAAGAACAGATTATCCGCCTCACCAGATCTTCAGGTGTTTCTTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGAACAGATTATCCGCCTCACCAGATCTTCAGGTGTTTCTTCATA  250

seq1  TAGCTCATCAAGGAACCATAGAAACAACTTGTACAATATTAAAAAGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCATCAAGGAACCATAGAAACAACTTGTACAATATTAAAAAGTTTT  300

seq1  AAACAGGTTAAAGTTGCATTTAGAGGAGAGGAAGTATACCAAGGCCTTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGTTAAAGTTGCATTTAGAGGAGAGGAAGTATACCAAGGCCTTCG  350

seq1  TAACTTAAATGGTTAATTTGCATCCTTCACCATACAGAAAGTGTTTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAAATGGTTAATTTGCATCCTTCACCATACAGAAAGTGTTTTGTG  400

seq1  ATATTTGGTGTCGATAGTGTAATTTCATTAAAGAGCTGGCTTGAGTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGGTGTCGATAGTGTAATTTCATTAAAGAGCTGGCTTGAGTACCA  450

seq1  CAGAAATGGGTTCTTATTCCATCCTGTGGAAAAATGATTTGTAGTTACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGGGTTCTTATTCCATCCTGTGGAAAAATGATTTGTAGTTACCA  500

seq1  TGTTCTTGTTTCTAAACTGTACTTTCTACTGTTGCCATGATTGAAGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGTTTCTAAACTGTACTTTCTACTGTTGCCATGATTGAAGTTGC  550

seq1  TATGTATTGCAGAGTAGAATTC  572
      ||||||||||||||||||||||
seq2  TATGTATTGCAGAGTAGAATTC  572

seq1: chr2_45517384_45518136
seq2: B6Ng01-002A11.g_68_820

seq1  GAATTCCTGTTTGTAGTTTTTGTAAACTATTCAGTGTTCAAGGTATAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTTGTAGTTTTTGTAAACTATTCAGTGTTCAAGGTATAGTG  50

seq1  ATTTACATGCCTAATAACACAGATAATATGGACTGTTCGTTCCTCGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATGCCTAATAACACAGATAATATGGACTGTTCGTTCCTCGGCAT  100

seq1  AATGAACATTCACTGTCTTATTTTAAATATTAACCCAAGATATTTAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACATTCACTGTCTTATTTTAAATATTAACCCAAGATATTTAGCAG  150

seq1  TGGAAATGACAGAGACAAGAAAGAGCTTAATATTTTGATCAAGAAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGACAGAGACAAGAAAGAGCTTAATATTTTGATCAAGAAAGAAA  200

seq1  ACACACCAATGTACAAAAGAGAAATAAATTGATTAAAAAGCATACATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAATGTACAAAAGAGAAATAAATTGATTAAAAAGCATACATAGT  250

seq1  CTTAATTCTACAGGCTGAGTGTTGCTGTTCACATAATGATATTTTATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTCTACAGGCTGAGTGTTGCTGTTCACATAATGATATTTTATCTA  300

seq1  GCAAGGTGATGGTATCGGAAATAATACCTTTGATGGGTAATTAGATCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTGATGGTATCGGAAATAATACCTTTGATGGGTAATTAGATCACA  350

seq1  GGAGCTGAGCTGAGCTTTCATAATTAGGATTAGTGACTATTTTTTTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGAGCTGAGCTTTCATAATTAGGATTAGTGACTATTTTTTTATGA  400

seq1  GACTCCAAGGAAGCAAGTCAGCCTCCCACTGCTAACAGCAAAAGGATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAAGGAAGCAAGTCAGCCTCCCACTGCTAACAGCAAAAGGATTCC  450

seq1  CCACTGGAGGACTGAGAACAGTCCCTCACCAGACCTTGAATCTGGCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGAGGACTGAGAACAGTCCCTCACCAGACCTTGAATCTGGCACCA  500

seq1  TTGATTGGGTTTTCTAGAACTGTGTGCTATATAACATCTATTCATACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGGGTTTTCTAGAACTGTGTGCTATATAACATCTATTCATACTAT  550

seq1  ACATAGATAATGTTATTTTGCTTTACCTACCTATCTTAGTTAGGGTTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGATAATGTTATTTTGCTTTACCTACCTATCTTAGTTAGGGTTACT  600

seq1  GTTGTTATGATGAAATAACTTGCCCAAGGGAACTGGGGAGGAAAGGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTATGATGAAATAACTTGCCCAAGGGAACTGGGGAGGAAAGGGTTT  650

seq1  ATTTGGCTTACACTTTGATATCATTGTTCATCATTAAAGGAAGTCAAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCTTACACTTTGATATCATTGTTCATCATTAAAGGAAGTCAAGAC  700

seq1  AGGAATTCAAAACAGGCAGTATCCTGGAGTCAGGGGCTTATGCAGAGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTCAAAACAGGCAGTATCCTGGAGTCAGGGGCTTATGCAGAGGCC  750

seq1  ATG  753
      |||
seq2  ATG  753