BAC Information

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BAC

Clone NameB6Ng01-002B06
Chromosome1 (Build37)2 (Build37)
Map Location 175,887,243 - 175,887,7578,956,749 - 8,957,811
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOlfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203
Downstream geneIfi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002B06.bB6Ng01-002B06.g
ACCDH840212DH840213
length1,0571,049
definitionDH840212|Mus musculus domesticus DNA, BAC clone: B6Ng01-002B06, 5' end.DH840213|Mus musculus domesticus DNA, BAC clone: B6Ng01-002B06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(175,887,243 - 175,887,757)(8,956,749 - 8,957,811)
sequence
gaattcttctacatgataaccgccagttttgccagcaccatttgttgaaa
atgctgtcttattttccactggatggttttagctcccttgtcaaagatca
agtgaccataggtgtgtgggttcatttctgggtcttcaattctattccat
tggtctactatcctgtcgctataccagtaccacgaagtttttatcacaat
tgctctgtagtacagtttgaggtcagggatggtgattccaccagaggttc
ttttatccttgagaagagtttttgctatcttaggttttttgttattccag
atgaatttggagattgccctttccaattcgttgaagaattgaatcggaat
tttgatggggattgcattgaatctgtagattgcttttggcaagatagcca
tttttactatattgatcctgccaatccatgagcatgggagatctttgcat
cttctgagatcttctttaatttctttcttcagatttgaagttcttatcat
gcagatctttcacttccttagttagagtcacgtcaaggcattttatatta
tttgtgactattgagaagggtgttgtttccctaatttctttctcagcctg
tttatcctttgtgtagagagaggccattgacttgtttaagttaattttat
atccagctccttcaccaaagctgtttatcaggtttaggagttctctggtg
gaatttttagtgtcacttatatatactatcatatcatctgcaaaaagtga
tattttgacttcttcctttccagtatgtatccccttgacctctctttgtt
gtttgaatttctctggctaggatttcaagtactatattgaataagtagga
agaaagtgggcagccttgtctagtcccctgattttagtgggattgcttcc
agcttcctcaccatttactttgatgttggctactggttttgttgtagaat
tgcttttatcaggttaggatgggccatgaattcctgatctttccagactt
tttttttatcatgaatgtgttggatttgtcaaatgctttctcagcatcta
tgagatg
gaattcctcttcaagaaacttgaagaaatctgtggtgattttcatctttg
ttaacagaggctagcagggtccagaagaaaaccctcgagggaaaaaagaa
aggattagtattttgaagttaagtttactggaacgttcactctcagtttt
tcacataaaatattccatcagcaaacagaaaagatcctggattaatttgt
ttgttttaaagtatcagaggaaaattgaattataagatcaccgtggaagt
gcaatgaagcagtaactctgtaggataaagcattgtgctaagaatgggaa
ctcataaaaatctttgaaaaatgtgaattgtggagtaagcaggtcagacc
tctctgctcttacacggtgcttacctcgtgcttaaataacctatgtcaaa
ccaggtcctaacaagtgcatctttgggaaaaataaaatataagacaaagt
tttcaatctccattgatagagaagatttgtgtggcttagaggacccagag
gaatcataggatgctaattctaagcaccacttgcctgcttgggatggcag
aaactgaagatactcagttgtgtatagtgaatccttatggctgtaaggtc
tgacactattgggaggcaaaatctaacaacaaagtccctgaatctctgac
tcttggaatctttcctcccttttttccacaaggttccttgagccttgggt
actggagctggtttacagatgtatctcttgagatcagtctcgacaattat
gcattttaattggacgttgttttctcagtgatccctatggaagagcatat
caattagttatccaatacaaaatggtcatccctgaaaagatacatacaga
catcattatacagatttagttggttggtttagaaatatatatgttataca
gatatacataaacaacacatacatacacatgcctataataacatgaatgg
aaaatgtccgtggattggaaggacaatgtgagagcttcttgagagaaaag
aaaggtaatatgtatgtgctatgatctcaaagaaatgtatttttactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175887243_175887757
seq2: B6Ng01-002B06.b_584_1101 (reverse)

seq1  CATCTCATTAGATGCTGAGAAAGCATTTGACAAAATCCAACACCCATTCA  50
      ||||||| ||||||||||||||||||||||| ||||||||||  ||||||
seq2  CATCTCA-TAGATGCTGAGAAAGCATTTGAC-AAATCCAACA--CATTCA  46

seq1  TGAT-----AAAAGTCTTGGAAAGATCAGGAATTCAAGGCCCATACCTAA  95
      ||||     ||||||| ||||||||||||||||||| ||||||| ||| |
seq2  TGATAAAAAAAAAGTC-TGGAAAGATCAGGAATTCATGGCCCAT-CCT-A  93

seq1  ACATGATAAAAGCAA-TCTACAGC-AAACCAGTAGCCAGCATCAAAGTAA  143
      || |||||||||||| |||||| | ||||||||||||| |||||||||||
seq2  ACCTGATAAAAGCAATTCTACAACAAAACCAGTAGCCAACATCAAAGTAA  143

seq1  ATGGTGA-GAAGCTTGAAGCAATCCCACTAAAATCA-GGGACTAGACAAG  191
      ||||||| |||||| ||||||||||||||||||||| |||||||||||||
seq2  ATGGTGAGGAAGCTGGAAGCAATCCCACTAAAATCAGGGGACTAGACAAG  193

seq1  GCTGTCCTCTCTCGCCCTACCTATTCAACATTGTACTGGAAGTCCTAGCC  241
      |||| || || ||  ||||| ||||||| || ||||| ||| ||||||||
seq2  GCTGCCCACTTTCTTCCTACTTATTCAATATAGTACTTGAAATCCTAGCC  243

seq1  AGAGCAATT-AGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGG  290
      |||| |||| | ||||||||  ||| ||||||||||||| | ||||||||
seq2  AGAGAAATTCAAACAACAAAGAGAGGTCAAGGGGATACATACTGGAAAGG  293

seq1  AAGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATATGT  340
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGT  343

seq1  GACCCTAAAAATTCCACCAGAGAACTCCTAAGCCTGATAAACAGCTTCAG  390
      ||| ||||||||||||||||||||||||||| |||||||||||||||  |
seq2  GACACTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACAGCTTTGG  393

seq1  TGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCT  440
      ||||| |||||||||||||||||||| ||||||||||||||||| |||||
seq2  TGAAGGAGCTGGATATAAAATTAACTTAAACAAGTCAATGGCCTCTCTCT  443

seq1  ACACAAAGGACAAACAGACTGAGAAAGAAATTAGGGAAACGACACCCTTC  490
      |||||||||| |||||| |||||||||||||||||||||| |||||||||
seq2  ACACAAAGGATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTC  493

seq1  TCAATAGCCACAAATAATATAAAAT  515
      ||||||| |||||||||||||||||
seq2  TCAATAGTCACAAATAATATAAAAT  518

seq1: chr2_8956749_8957811
seq2: B6Ng01-002B06.g_70_1118

seq1  GAATTCCTCTTCAAGAAACTTGAAGAAATCTGTGGTGATTTTCATCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCAAGAAACTTGAAGAAATCTGTGGTGATTTTCATCTTTG  50

seq1  TTAACAGAGGCTAGCAGGGTCCAGAAGAAAACCCTCGAGGGAAAAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGAGGCTAGCAGGGTCCAGAAGAAAACCCTCGAGGGAAAAAAGAA  100

seq1  AGGATTAGTATTTTGAAGTTAAGTTTACTGGAACGTTCACTCTCAGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAGTATTTTGAAGTTAAGTTTACTGGAACGTTCACTCTCAGTTTT  150

seq1  TCACATAAAATATTCCATCAGCAAACAGAAAAGATCCTGGATTAATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAAAATATTCCATCAGCAAACAGAAAAGATCCTGGATTAATTTGT  200

seq1  TTGTTTTAAAGTATCAGAGGAAAATTGAATTATAAGATCACCGTGGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTAAAGTATCAGAGGAAAATTGAATTATAAGATCACCGTGGAAGT  250

seq1  GCAATGAAGCAGTAACTCTGTAGGATAAAGCATTGTGCTAAGAATGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAAGCAGTAACTCTGTAGGATAAAGCATTGTGCTAAGAATGGGAA  300

seq1  CTCATAAAAATCTTTGAAAAATGTGAATTGTGGAGTAAGCAGGTCAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAAAATCTTTGAAAAATGTGAATTGTGGAGTAAGCAGGTCAGACC  350

seq1  TCTCTGCTCTTACACGGTGCTTACCTCGTGCTTAAATAACCTATGTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTCTTACACGGTGCTTACCTCGTGCTTAAATAACCTATGTCAAA  400

seq1  CCAGGTCCTAACAAGTGCATCTTTGGGAAAAATAAAATATAAGACAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCCTAACAAGTGCATCTTTGGGAAAAATAAAATATAAGACAAAGT  450

seq1  TTTCAATCTCCATTGATAGAGAAGATTTGTGTGGCTTAGAGGACCCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATCTCCATTGATAGAGAAGATTTGTGTGGCTTAGAGGACCCAGAG  500

seq1  GAATCATAGGATGCTAATTCTAAGCACCACTTGCCTGCTTGGGATGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATAGGATGCTAATTCTAAGCACCACTTGCCTGCTTGGGATGGCAG  550

seq1  AAACTGAAGATACTCAGTTGTGTATAGTGAATCCTTATGGCTGTAAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAGATACTCAGTTGTGTATAGTGAATCCTTATGGCTGTAAGGTC  600

seq1  TGACACTATTGGGAGGCAAAATCTAACAACAAAGTCCCTGAATCTCTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTATTGGGAGGCAAAATCTAACAACAAAGTCCCTGAATCTCTGAC  650

seq1  TCTTGGAATCTTTCCTCCCTTTTTTCCACAAGGTTCCTTGAGCCTTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAATCTTTCCTCCCTTTTTTCCACAAGGTTCCTTGAGCCTTGGGT  700

seq1  ACTGGAGCTGGTTTACAGATGTATCTCTTGAGATCAGTCTCGACAATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGCTGGTTTACAGATGTATCTCTTGAGATCAGTCTCGACAATTAT  750

seq1  GCATTTTAATTGGACGTTGTTTTCTCAGTGATCCCTATGGAAGAGCATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTAATTGGACGTTGTTTTCTCAGTGATCCCTATGGAAGAGCATAT  800

seq1  CAATTAGTTATCCAATACAAAATGGTCATCCCTGAAAAGATACATACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGTTATCCAATACAAAATGGTCATCCCTGAAAAGATACATACAGA  850

seq1  CATCATTATACAGATTTAGTTGGTTGGTTTTAGAAATATATATGTTTATA  900
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  CATCATTATACAGATTTAGTTGGTTGG-TTTAGAAATATATATG-TTATA  898

seq1  CAGATATACATAAACAAACACATACATACACATGCCTATAATAACAATGA  950
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  CAGATATACATAAAC-AACACATACATACACATGCCTATAATAAC-ATGA  946

seq1  ATGGAAAAATGGTCCGTGGATTTGAAGGACAATGTGAGAGCTCTTTGAGA  1000
      ||||||||   ||||||||||| |||||||||||||||||||  ||||||
seq2  ATGGAAAA--TGTCCGTGGATTGGAAGGACAATGTGAGAGCTTCTTGAGA  994

seq1  GGAAAAGGAAAGGGTAATTATGTAATTGTGCTATGATCTCAAAAGAAATG  1050
       ||||||  || ||||| ||||||  |||||||||||||| |||||||||
seq2  -GAAAAG--AAAGGTAA-TATGTA--TGTGCTATGATCTC-AAAGAAATG  1037

seq1  TATTTTTAACTGC  1063
      ||||||| |||||
seq2  TATTTTT-ACTGC  1049