BAC Information

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BAC

Clone NameB6Ng01-002C16
Chromosome2 (Build37)
Map Location 62,491,171 - 62,609,943
singlet/doubletdoublet
Overlap geneGca, Kcnh7
Upstream geneTank, Psmd14, Tbr1, LOC100039274, Slc4a10, Dpp4, Gcg, Fap, Ifih1
Downstream geneEG667257
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002C16.bB6Ng01-002C16.g
ACCDH840275DH840276
length1,1401,075
definitionDH840275|Mus musculus domesticus DNA, BAC clone: B6Ng01-002C16, 5' end.DH840276|Mus musculus domesticus DNA, BAC clone: B6Ng01-002C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,608,815 - 62,609,943)(62,491,171 - 62,492,259)
sequence
gaattctggaatatgtaactttctcagtgggaacagtatttgctgtgcaa
gtctgaagatctgattttctctttaatatccgacaaccacatttttaagt
ctggatatggtgacaagtgtctctaaccagtcactgagaatggagccaga
aggatcctaagagcttgttaggctgtccactaaaaagatccaagttcaga
gacagaatttggctcaaaaattatgctggataaatgactgaaaaaagtat
ctcttgtttgatgccaccctctgggatacgcacatgcctgtattgcaagt
gtccatgtacatacgcatacacacacattaatataataatacacacacac
acgcacgcacatgcacacacacacacacacacactcacacatatgagaga
gagagagagaccaatataagggaaaaacagtctaaagattttaaaagaat
aagaagtccagcaccatgcaatattaattcaaacaataattatagttatg
atgaccattaacaagagagagaacaaataaagacatgaagacctgacaaa
attcattcaactagtaggtgaaaccaagctcttggcaaatgcaagtctgg
aatcctcaagaagaagagcaagcagaagcagcaaggtggagcccccagaa
tgaaggaggtgggtggagacttgttcagaaatgctatggcttgatttttc
cttcaagattgagaaaaactataaaagacaggtttgaaaaaaattcaatg
aatatgagacaaactgagaacaagacatatcaaggcacattatcaaactg
ccaaaaactaaccacaaagtgaaattttcaaaggtaggaaaaggaaaata
aagacattataaacaacataaaaataattaaaatttgacagatcttatta
tttacaatgtaatcaacaaggacaatagggaaacgtcttctaaatttgct
ggacaaaaagggagtatctgtccaccatggaaacttattactaaactgaa
tttcaagcatggacaaggaagaggcgatatgatttattcatgaacaggct
ataagaaactattaatttctttcaatgaacggagaacttacctcatgtga
aagcatggaataccctaggatggaaagagacccaaactag
gaattcaactgaaaaagctgggtaatgcttagaaatggaagagaaagttg
caacagttactgctctgacttgctacgaaagaggacttgctgatatcatt
cccggatctttgtttcctcaatctactggctcagcaaagggaaggaacaa
tgtgcaactcatctactgttcaaaaacatgccttatgccgggtgtggtgg
cgcatgcctttaaccccaggacttgggaggcagaggcaggtggatttctg
agttcaaggccagcctggtctacagagtagagttccatgacagccaaggc
tatacagagagaccctgtctcaaaaaacaaacaaacaaacaaacaaaaac
aaaaaacaaaacccaaaacatgccttacttgtagttaattaaatatctta
tggttttataattaattttgtatacttttatgatattatcaggaaagtga
acttcccgaagaatacaaggaacagccgttttgttgcctgcttattgcac
ctgaggtgataaatattccaaccaaagagattcagatatgccttagtggg
tgaagctccgagactcacacctcctccaaagagaacaggtcacttttttt
ccccagtgttaaacattcaggttatatgattttgggaaagtgttttcaaa
ttctgaatgaaagacaaaatacaggactcttgtcaaaatgaatttttaga
tgagctcacacttgatatatttacgttcttcagtgtagcaaggtgaggct
agctaggcagctgcctttattctatgggttcctcatcgaatcaagtgtta
ggaagttgctggatactgacgctatatgccactagattaagtgaacgaaa
ggacccaagcccaggagggatccagactttttaagatgggttcatatcat
tctaagtttcttctaaatttctaactagcgatgcatacattgtgtattca
tgttgcaaatatatctctcagatctgcatagtctttcttgatcttccatc
ttgttcaatgtttagacttattcagagtgacaattcctttactttcattt
tgccactaatcaaaaaacagtctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_62608815_62609943
seq2: B6Ng01-002C16.b_43_1182 (reverse)

seq1  CTAGTTTGGGTCTCTTTCATTCCTA-GGTATTCCATGCTTTCACATGGTG  49
      ||||||||||||||||||  ||||| |||||||||||||||||||||  |
seq2  CTAGTTTGGGTCTCTTTCCATCCTAGGGTATTCCATGCTTTCACATGAGG  50

seq1  T-AGTTCTCCGTTCATTGGAAG-AATTTATAGTTTCTTATAGCCTGTTCA  97
      | |||||||||||||||| ||| |||| ||||||||||||||||||||||
seq2  TAAGTTCTCCGTTCATTGAAAGAAATTAATAGTTTCTTATAGCCTGTTCA  100

seq1  TG-ATAAATCATATCGCCCTCTTCCTTGTCCATGCTTGAAATTCAGTTTA  146
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGAATAAATCATATCG-CCTCTTCCTTGTCCATGCTTGAAATTCAGTTTA  149

seq1  GTAATAAGTTTCCATGGT-GACAGATACT-CCTTTTTGTCCAGC-AATTT  193
      |||||||||||||||||| |||||||||| |||||||||||||| |||||
seq2  GTAATAAGTTTCCATGGTGGACAGATACTCCCTTTTTGTCCAGCAAATTT  199

seq1  AG-AGATCTTTCCCTATTGT-CTTGTTGATTACATTGTATATAAT-AGAT  240
      || |||  |||||||||||| |||||||||||||||||| ||||| ||||
seq2  AGAAGACGTTTCCCTATTGTCCTTGTTGATTACATTGTAAATAATAAGAT  249

seq1  CTGTCAA--TTTTATTATTTTTATGTTGTTTATAATGTCTTTATTTTCCT  288
      |||||||  ||| |||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAATTTTAATTATTTTTATGTTGTTTATAATGTCTTTATTTTCCT  299

seq1  TTTCCTACCTTTGAAAATTTCACTTTGTGGTTAGTTTTTGGCAGTTTGAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTACCTTTGAAAATTTCACTTTGTGGTTAGTTTTTGGCAGTTTGAT  349

seq1  AATGTGCCTTGATATGTCTTGTTCTCAGTTTGTCTCATATTCATTGAATT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCCTTGATATGTCTTGTTCTCAGTTTGTCTCATATTCATTGAATT  399

seq1  TTTTTCAAACCTGTCTTTTATAGTTTTTCTCAATCTTGAAGGAAAAATCA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAACCTGTCTTTTATAGTTTTTCTCAATCTTGAAGGAAAAATCA  449

seq1  AGCCATAGCATTTCTGAACAAGTCTCCACCCACCTCCTTCATTCTGGGGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAGCATTTCTGAACAAGTCTCCACCCACCTCCTTCATTCTGGGGG  499

seq1  CTCCACCTTGCTGCTTCTGCTTGCTCTTCTTCTTGAGGATTCCAGACTTG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCTTGCTGCTTCTGCTTGCTCTTCTTCTTGAGGATTCCAGACTTG  549

seq1  CATTTGCCAAGAGCTTGGTTTCACCTACTAGTTGAATGAATTTTGTCAGG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCCAAGAGCTTGGTTTCACCTACTAGTTGAATGAATTTTGTCAGG  599

seq1  TCTTCATGTCTTTATTTGTTCTCTCTCTTGTTAATGGTCATCATAACTAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGTCTTTATTTGTTCTCTCTCTTGTTAATGGTCATCATAACTAT  649

seq1  AATTATTGTTTGAATTAATATTGCATGGTGCTGGACTTCTTATTCTTTTA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGTTTGAATTAATATTGCATGGTGCTGGACTTCTTATTCTTTTA  699

seq1  AAATCTTTAGACTGTTTTTCCCTTATATTGGTCTCTCTCTCTCTCTCATA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTAGACTGTTTTTCCCTTATATTGGTCTCTCTCTCTCTCTCATA  749

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTGCGTGCGTGTGTGTGTG  788
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGTGTGTGTGTGTGTGTGTGTGCATGTGCGTGCGTGTGTGTGTG  799

seq1  TATTATTATATTAATGTGTGTGTATGCGTATGTACATGGACACTTGCAAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATATTAATGTGTGTGTATGCGTATGTACATGGACACTTGCAAT  849

seq1  ACAGGCATGTGCGTATCCCAGAGGGTGGCATCAAACAAGAGATACTTTTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCATGTGCGTATCCCAGAGGGTGGCATCAAACAAGAGATACTTTTT  899

seq1  TCAGTCATTTATCCAGCATAATTTTTGAGCCAAATTCTGTCTCTGAACTT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCATTTATCCAGCATAATTTTTGAGCCAAATTCTGTCTCTGAACTT  949

seq1  GGATCTTTTTAGTGGACAGCCTAACAAGCTCTTAGGATCCTTCTGGCTCC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTTTAGTGGACAGCCTAACAAGCTCTTAGGATCCTTCTGGCTCC  999

seq1  ATTCTCAGTGACTGGTTAGAGACACTTGTCACCATATCCAGACTTAAAAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAGTGACTGGTTAGAGACACTTGTCACCATATCCAGACTTAAAAA  1049

seq1  TGTGGTTGTTGGATATTAAAGAGAAAATCAGATCTTCAGACTTGCACAGC  1088
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGTCGGATATTAAAGAGAAAATCAGATCTTCAGACTTGCACAGC  1099

seq1  AAATACTGTTCCCACTGAGAAAGTTACATATTCCAGAATTC  1129
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTGTTCCCACTGAGAAAGTTACATATTCCAGAATTC  1140

seq1: chr2_62491171_62492259
seq2: B6Ng01-002C16.g_68_1142

seq1  GAATTCAACTGAAAAAGCTGGGTAATGCTTAGAAATGGAAGAGAAAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGAAAAAGCTGGGTAATGCTTAGAAATGGAAGAGAAAGTTG  50

seq1  CAAGAGTTACTGCTCTGACTTGCTACGAAAGAGGACTTGCTGATATCATT  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTTACTGCTCTGACTTGCTACGAAAGAGGACTTGCTGATATCATT  100

seq1  CCCGGATCTTTGTTTCCTCAATCTACTGGCTCAGCAAAGGGAAGGAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGATCTTTGTTTCCTCAATCTACTGGCTCAGCAAAGGGAAGGAACAA  150

seq1  TGTGCAACTCATCTACTGTTCAAAAACATGCCTTATGCCGGGTGTGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAACTCATCTACTGTTCAAAAACATGCCTTATGCCGGGTGTGGTGG  200

seq1  CGCATGCCTTTAACCCCAGGACTTGGGAGGCAGAGGCAGGTGGATTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGCCTTTAACCCCAGGACTTGGGAGGCAGAGGCAGGTGGATTTCTG  250

seq1  AGTTCAAGGCCAGCCTGGTCTACAGAGTAGAGTTCCATGACAGCCAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGGCCAGCCTGGTCTACAGAGTAGAGTTCCATGACAGCCAAGGC  300

seq1  TATACAGAGAGACCCTGTCTCAAAAAACAAACAAACAAACAAACAAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGAGAGACCCTGTCTCAAAAAACAAACAAACAAACAAACAAAAAC  350

seq1  AAAAAACAAAACCCAAAACATGCCTTACTTGTAGTTAATTAAATATCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAACCCAAAACATGCCTTACTTGTAGTTAATTAAATATCTTA  400

seq1  TGGTTTTATAATTAATTTTGTATACTTTTATGATATTATCAGGAAAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTATAATTAATTTTGTATACTTTTATGATATTATCAGGAAAGTGA  450

seq1  ACTTCCCGAAGAATACAAGGAACAGCCGTTTTGTTGCCTGCTTATTGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCGAAGAATACAAGGAACAGCCGTTTTGTTGCCTGCTTATTGCAC  500

seq1  CTGAGGTGATAAATATTCCAACCAAAGAGATTCAGATATGCCTTAGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTGATAAATATTCCAACCAAAGAGATTCAGATATGCCTTAGTGGG  550

seq1  TGAAGCTCCGAGACTCACACCTCCTCCAAAGAGAACAGGTCACTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTCCGAGACTCACACCTCCTCCAAAGAGAACAGGTCACTTTTTTT  600

seq1  CCCCAGTGTTAAACATTCAGGTTATATGATTTTGGGAAAGTGTTTTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGTTAAACATTCAGGTTATATGATTTTGGGAAAGTGTTTTCAAA  650

seq1  TTCTGAATGAAAGACAAAATAGAGGACTCTTGTAAAAATGAATTTTTAGA  700
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  TTCTGAATGAAAGACAAAATACAGGACTCTTGTCAAAATGAATTTTTAGA  700

seq1  TGAGCTCACACTTGATATATTTACGTTCTTCAGTGTAGCAAGGTGAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCACACTTGATATATTTACGTTCTTCAGTGTAGCAAGGTGAGGCT  750

seq1  AGCTAGGCAGCTGCCTTTATTCTATGGGTTCCTCATCGAATCAAGTGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGCAGCTGCCTTTATTCTATGGGTTCCTCATCGAATCAAGTGTTA  800

seq1  GGAAGTTGCTGGATACTGAGGCTATATGCCACTAGATTAAGTGAAGGAAA  850
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  GGAAGTTGCTGGATACTGACGCTATATGCCACTAGATTAAGTGAACGAAA  850

seq1  GGACCCAAGCCCAGGGAGGGATCCAGACATTTTTAAGATGGGTTTCATAT  900
      ||||||||||||| |||||||||||||| ||||||||||||| |||||||
seq2  GGACCCAAGCCCA-GGAGGGATCCAGAC-TTTTTAAGATGGG-TTCATAT  897

seq1  CATTCTAAGTTTTCTTCTAAATTTCTAACTAGCAATGCATACATTGGGTA  950
      ||||||||| ||||||||||||||||||||||| |||||||||||| |||
seq2  CATTCTAAG-TTTCTTCTAAATTTCTAACTAGCGATGCATACATTGTGTA  946

seq1  TTCATGTTGCAAATATATCTCTCAGATCTTGCATAGTCTTTCTTGATCTT  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCATGTTGCAAATATATCTCTCAGATC-TGCATAGTCTTTCTTGATCTT  995

seq1  CACATCTTGTTCAAATGTTTAAAATTTATTCAGAAGTGACGATTTCATTT  1050
      | |||||||||| ||||||| | | |||||||| |||||| | ||| |||
seq2  C-CATCTTGTTC-AATGTTT-AGACTTATTCAG-AGTGAC-AATTCCTTT  1040

seq1  TATTTCATTTTTGCCACAAAATCAGTAAAAACAGTCTCA  1089
        ||||| |||||||||  |||||  |||||||||||||
seq2  ACTTTCA-TTTTGCCAC-TAATCA--AAAAACAGTCTCA  1075