BAC Information

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BAC

Clone NameB6Ng01-002O05
Chromosome2 (Build37)
Map Location 119,061,530 - 119,232,354
singlet/doubletdoublet
Overlap geneSpint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1
Upstream geneFsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d
Downstream geneLOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002O05.bB6Ng01-002O05.g
ACCDH840780DH840781
length9911,105
definitionDH840780|Mus musculus domesticus DNA, BAC clone: B6Ng01-002O05, 5' end.DH840781|Mus musculus domesticus DNA, BAC clone: B6Ng01-002O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,061,530 - 119,062,522)(119,231,225 - 119,232,354)
sequence
gaattcaagtgtcctcttctggttttaacaggcacaaagcagacacaaaa
tgcatataacatacaggcactcatacacagaacactctttagaatctttg
ttgttgctttgattttttgagactgggtttttccatgtaaccctggctgt
actggactctgtagaccaggcaggtcttgaactcaggagatctgccagcc
tccccaagtgctgtaccaacaccagcgccatcagcagtgccatcactagg
ccaaatgttttatagtcttaaagatatatatatatttatgatacgtgtat
gtgtgtgtatgtgtgaataaataccacatttgcacaggtgtttgaggagg
ccagaagagggtttcagaccccttggagctagagttcaagaggctgtgag
ccctgagatgtggatgctgggaattgaactctggtcctccacaagagtag
caattgctctgaactgttgatccgtctctcctggggggctggggggcata
aataagacaaatcttgccagatatagtgactcatctctgtaattgcaaca
ctaggaaatgatgcagaaccagagatgcttttcaaggccttgtctcagaa
ataagttaatttgaaagaaaacaggagtgtagatgtcctgtagacatctg
ggatgtgaagaaaggactgcgtgttttttcatttaggaaaagcaatgagc
ttggtatgaaggtgttccctgttgcgtgggagattactgaacccttcaga
gagctggagcctccaggtgtccaaacagggaatttatgtggaagagagtg
gtcaactactcactggggagtccccttgggatgggagagtaaacctgaga
ttcagggaaaggggacaatttaccacaaaagatgaagagttcaaaaggaa
atgtttacaataatgagggagaggcgctaaacaaaagggaatgccctctt
gtggtgaaacaggtagccaggatacaaggaatcactgttgg
gaattccatagttttaaagcagatcccagccttgggagtctcttgaattc
tgtatagaagtcaggattggggattcagactttttatataaaaacctagg
ttgcagctattcaggtggagttaggtgtaatggttctcatcttgactata
cattgcagacattgaaatgaggtctgagaattaactaggatatttaaaat
ttaaagactcctgaggtaatgttaatgtatagccatggttcaccactgcg
ttagccatcaaagacaacagtgtgatacatgttttgtttagttacttaca
tgtttagggtctctctattttcatgtctgaaaaatgactatttgtggaag
cgggagaggccatagacatagaaacaatagaacaagaacaaataatcaca
taccaacggagcgaagtctcttataggaaagttgcagtaagctaaggtat
ctggcgatcagaactatgtaaacggcttgtatttttttacttgggtttaa
tatatcaaaggctctatgttccagcctgctatttcaaggagtaattaagt
agagattaccatgattatttctacctgagaataaggggataagaaccatg
gtaatacagaaggaatgaatacagtagcaaaagggaaggttggaccagtg
agatgactcagcagagaagggcacttgcctccaagtctaaagacctttgt
tgagtccccagaacccacatggttgagaacccacaaattgtcctctgacc
ttcacatgtgcatctatgcatgcacacatatatacagacacagagaataa
aacattatcttaaaaaggagtgggaagctttggagggtttttgttttgta
ttttttttgttgtgtttgtttttgtttttgcaagcagagctggcttgtga
attttacagggaattatccattgggggcaggttcctttaatattagtcaa
cttcctttagcagaaatattaataagcacacctgagtcaattcatctcta
agtcttaagatttcaacagtgctggattttttttttgtttcaaggacaga
ttcctctgtaagtctgaatttaaggaatttttcattgggggcaggttctt
taata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_119061530_119062522
seq2: B6Ng01-002O05.b_47_1037

seq1  GAATTCAAGTGTCCTCTTCTGGTTTTAACAGGCACAAAGCAGACACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGTCCTCTTCTGGTTTTAACAGGCACAAAGCAGACACAAAA  50

seq1  TGCATATAACATACAGGCACTCATACACAGAACACTCTTTAGAATCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATAACATACAGGCACTCATACACAGAACACTCTTTAGAATCTTTG  100

seq1  TTGTTGCTTTGATTTTTTGAGACTGGGTTTTTCCATGTAACCCTGGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTTTGATTTTTTGAGACTGGGTTTTTCCATGTAACCCTGGCTGT  150

seq1  ACTGGACTCTGTAGACCAGGCAGGTCTTGAACTCAGGAGATCTGCCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACTCTGTAGACCAGGCAGGTCTTGAACTCAGGAGATCTGCCAGCC  200

seq1  TCCCCAAGTGCTGTACCAACACCAGCGCCATCAGCAGTGCCATCACTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGTGCTGTACCAACACCAGCGCCATCAGCAGTGCCATCACTAGG  250

seq1  CCAAATGTTTTATAGTCTTAAAGATATATATATATTTATGATACGTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTTTTATAGTCTTAAAGATATATATATATTTATGATACGTGTAT  300

seq1  GTGTGTGTATGTGTGAATAAATACCACATTTGCACAGGTGTTTGAGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTATGTGTGAATAAATACCACATTTGCACAGGTGTTTGAGGAGG  350

seq1  CCAGAAGAGGGTTTCAGACCCCTTGGAGCTAGAGTTCAAGAGGCTGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGAGGGTTTCAGACCCCTTGGAGCTAGAGTTCAAGAGGCTGTGAG  400

seq1  CCCTGAGATGTGGATGCTGGGAATTGAACTCTGGTCCTCCACAAGAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGATGTGGATGCTGGGAATTGAACTCTGGTCCTCCACAAGAGTAG  450

seq1  CAATTGCTCTGAACTGTTGATCCGTCTCTCCTGGGGGGCTGGGGGGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCTCTGAACTGTTGATCCGTCTCTCCTGGGGGGCTGGGGGGCATA  500

seq1  AATAAGACAAATCTTGCCAGATATAGTGACTCATCTCTGTAATTGCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACAAATCTTGCCAGATATAGTGACTCATCTCTGTAATTGCAACA  550

seq1  CTAGGAAATGATGCAGAACCAGAGATGCTTTTCAAGGCCTTGTCTCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAATGATGCAGAACCAGAGATGCTTTTCAAGGCCTTGTCTCAGAA  600

seq1  ATAAGTTAATTTGAAAGAAAACAGGAGTGTAGATGTCCTGTAGACATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTAATTTGAAAGAAAACAGGAGTGTAGATGTCCTGTAGACATCTG  650

seq1  GGATGTGAAGAAAGGACTGCGTG-TTTTTCATTTAGGAAAAGCAATGAGC  699
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGATGTGAAGAAAGGACTGCGTGTTTTTTCATTTAGGAAAAGCAATGAGC  700

seq1  TTGGTATGAAGGTGTTCCCTGTTGCGTGGGAGATTAACTGAACCCTTCAG  749
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGGTATGAAGGTGTTCCCTGTTGCGTGGGAGATT-ACTGAACCCTTCAG  749

seq1  AGAGCTGGAGCCTCCAGGTGTCCAAACAGGGAATTTATGTGGAAGAGAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGAGCCTCCAGGTGTCCAAACAGGGAATTTATGTGGAAGAGAGT  799

seq1  GGTCAACTACTCACTGGGAGTTCCCCTTGGGATGGGAGAGTAAACCTGAG  849
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  GGTCAACTACTCACTGGGGAGTCCCCTTGGGATGGGAGAGTAAACCTGAG  849

seq1  ATTCAGGG-AAGGGGACAATTTACCAACAAAAGATGAAGAGTTCAAAAGG  898
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  ATTCAGGGAAAGGGGACAATTTACC-ACAAAAGATGAAGAGTTCAAAAGG  898

seq1  AAATGTTTACAAGAATGAGGGAGAGGCGC-AAACAAAAGGGAATGCACTC  947
      |||||||||||| |||||||||||||||| |||||||||||||||| |||
seq2  AAATGTTTACAATAATGAGGGAGAGGCGCTAAACAAAAGGGAATGCCCTC  948

seq1  CTGTGGGTGAAACAGGGAAGCCAGGATACCAGGAATCACCTGTTGG  993
       ||| ||||||||| || ||||||||||| |||||||| |||||||
seq2  TTGT-GGTGAAACA-GGTAGCCAGGATACAAGGAATCA-CTGTTGG  991

seq1: chr2_119231225_119232354
seq2: B6Ng01-002O05.g_69_1173 (reverse)

seq1  TATTAAAAGGAACCTGCCCCCAATGGATAAATTCCCTGTAAAATTCAGGA  50
      |||||||  ||||||||||||||| || |||||||   | ||||||| ||
seq2  TATTAAA--GAACCTGCCCCCAAT-GAAAAATTCC---TTAAATTCA-GA  43

seq1  CTATACAGAGAAACCCTGT-CTTGAAAAACAAAAAAAAAATTCAAGCACT  99
      || ||||||| ||  |||| ||||  |||||||||||||| || ||||||
seq2  CT-TACAGAGGAA-TCTGTCCTTG--AAACAAAAAAAAAA-TCCAGCACT  88

seq1  GTGTGAAATC-TAAGACTTAGAGATAAATTGACTTCAGGTGTTGCTTATT  148
      || ||||||| |||||||||||||| ||||||| ||||||| ||||||||
seq2  GT-TGAAATCTTAAGACTTAGAGATGAATTGAC-TCAGGTG-TGCTTATT  135

seq1  -ATATTTCTTGCTAAAAGAAGTTGACTAATTATTAAAAGGAACCTGCCCC  197
       ||||||| ||||||| |||||||||||| |||| |||||||||||||||
seq2  AATATTTC-TGCTAAAGGAAGTTGACTAA-TATT-AAAGGAACCTGCCCC  182

seq1  CAATGGATAAATTCCCTGTAAAATTCACCAAGCCAGCTCTGGCTTGCAAA  247
      |||||||| |||||||||||||||||| |||||||||||| |||||||||
seq2  CAATGGAT-AATTCCCTGTAAAATTCA-CAAGCCAGCTCT-GCTTGCAAA  229

seq1  AAACAAAAAACAAAACAACAACAAAAAAAAATAACAAAACAAAAAACCCT  297
      ||   |||||||||   |||||||||||||   ||||||| |||||||||
seq2  AA--CAAAAACAAA--CACAACAAAAAAAA--TACAAAAC-AAAAACCCT  272

seq1  CCAAAGCTTCCCACTCCTTTTTAAGATAATGTTTTATTCTCTGTGTCTGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTTCCCACTCCTTTTTAAGATAATGTTTTATTCTCTGTGTCTGT  322

seq1  ATATATGTGTGCATGCATAGATGCACATGTGAAGGTCAGAGGACAATTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTGTGCATGCATAGATGCACATGTGAAGGTCAGAGGACAATTTG  372

seq1  TGGGTTCTCAACCATGTGGGTTCTGGGGACTCAACAAAGGTCTTTAGACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTCAACCATGTGGGTTCTGGGGACTCAACAAAGGTCTTTAGACT  422

seq1  TGGAGGCAAGTGCCCTTCTCTGCTGAGTCATCTCACTGGTCCAACCTTCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCAAGTGCCCTTCTCTGCTGAGTCATCTCACTGGTCCAACCTTCC  472

seq1  CTTTTGCTACTGTATTCATTCCTTCTGTATTACCATGGTTCTTATCCCCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTACTGTATTCATTCCTTCTGTATTACCATGGTTCTTATCCCCT  522

seq1  TATTCTCAGGTAGAAATAATCATGGTAATCTCTACTTAATTACTCCTTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCAGGTAGAAATAATCATGGTAATCTCTACTTAATTACTCCTTGA  572

seq1  AATAGCAGGCTGGAACATAGAGCCTTTGATATATTAAACCCAAGTAAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAGGCTGGAACATAGAGCCTTTGATATATTAAACCCAAGTAAAAA  622

seq1  AATACAAGCCGTTTACATAGTTCTGATCGCCAGATACCTTAGCTTACTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAGCCGTTTACATAGTTCTGATCGCCAGATACCTTAGCTTACTGC  672

seq1  AACTTTCCTATAAGAGACTTCGCTCCGTTGGTATGTGATTATTTGTTCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCTATAAGAGACTTCGCTCCGTTGGTATGTGATTATTTGTTCTT  722

seq1  GTTCTATTGTTTCTATGTCTATGGCCTCTCCCGCTTCCACAAATAGTCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATTGTTTCTATGTCTATGGCCTCTCCCGCTTCCACAAATAGTCAT  772

seq1  TTTTCAGACATGAAAATAGAGAGACCCTAAACATGTAAGTAACTAAACAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGACATGAAAATAGAGAGACCCTAAACATGTAAGTAACTAAACAA  822

seq1  AACATGTATCACACTGTTGTCTTTGATGGCTAACGCAGTGGTGAACCATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTATCACACTGTTGTCTTTGATGGCTAACGCAGTGGTGAACCATG  872

seq1  GCTATACATTAACATTACCTCAGGAGTCTTTAAATTTTAAATATCCTAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACATTAACATTACCTCAGGAGTCTTTAAATTTTAAATATCCTAGT  922

seq1  TAATTCTCAGACCTCATTTCAATGTCTGCAATGTATAGTCAAGATGAGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTCAGACCTCATTTCAATGTCTGCAATGTATAGTCAAGATGAGAA  972

seq1  CCATTACACCTAACTCCACCTGAATAGCTGCAACCTAGGTTTTTATATAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACACCTAACTCCACCTGAATAGCTGCAACCTAGGTTTTTATATAA  1022

seq1  AAAGTCTGAATCCCCAATCCTGACTTCTATACAGAATTCAAGAGACTCCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTGAATCCCCAATCCTGACTTCTATACAGAATTCAAGAGACTCCC  1072

seq1  AAGGCTGGGATCTGCTTTAAAACTATGGAATTC  1130
      |||||||||||||||||||||||||||||||||
seq2  AAGGCTGGGATCTGCTTTAAAACTATGGAATTC  1105