BAC Information

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BAC

Clone NameB6Ng01-002P09
Chromosome2 (Build37)
Map Location 53,373,276 - 53,374,303
singlet/doubletsinglet
Overlap geneLOC666872
Upstream geneCacnb4, OTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6
Downstream geneLOC666876, LOC207933, Rprm, LOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002P09.bB6Ng01-002P09.g
ACCDH840828DH840829
length1,2291,024
definitionDH840828|Mus musculus domesticus DNA, BAC clone: B6Ng01-002P09, 5' end.DH840829|Mus musculus domesticus DNA, BAC clone: B6Ng01-002P09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttgtttatctatattggatattagtccc
ttatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttaccttgcagaagctttgcagtttca
tgaggtcccatttgtcaattctcgatcttacagcacaagccattgatgtt
ctagtcaggaatttttcccctgtgcccatatatttgagactttcccccat
tttctcctctataagtttcagtgtctctggttttatgtggtgttccttga
tccacttagatttgactttagtacaaggagattggaattgatcgatttgc
attcttctgcatgttaacaaccagttgtgccaacaccatttgttgaaaat
gctgtcttccttccactggatggctttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcattataccagtaccatgcagtttttattacaattgc
tgtgtagttaagctttaggtcaggcatgatgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggatttttgttattccagatg
aatttgcagattgctctttctaattcgttgaagaattgagttggaatttt
gatagggattgcattgaatctgtagattgctccccgccgccccgccattt
ttacaatgttgatcctgccaatccatgagcttgggaaatctttccatctt
ctgagatcttctttaatttctatcttcagagacttgaagttctatcatac
agatctttcacttcctagttagagtcacgccttgatatttatgtattgtg
actattgagaaggtgttgttccctaatttctttctagccagttattcttt
gagtagaagaaaggccatgactctttgagtatttatatccatgctacttc
actcagcctgttcctcagggtagggttcctcggtgagttttaggtcttac
atcctactaatacatgctaaaaaatgaatttggacctctcctttccactt
gtatccttgatctcctttgtggccgaatgctctggctaggactccagtca
cacaattgaatatcgatgagtggagatat
gaattcagtacaggcaatggtcctagaatatgctttaccaagtctctcat
tatggaaaagaacctctaaccttgtgctatatcatttcttctctgcttcc
ttttccatccttcgctccatctccctgagatatgatctgcaaaaatacct
atacatatattggcttaagctcatgctttagaaaaactcagataaggcaa
atgttcactttcatttcagttttctagaagtagttttctcttcctctatt
ctctataggtaatcagaagaaaataacaagagcaatcatattttagacat
tccttctcaactaaaacatgagatataaacaccagctatatatgctgggc
tatttccaaatattatccacagaaatacatccatatatatattacacagg
atgtaacatgactttaaaaacacaaaagaatagctaagatattggagtta
gaaaaaataaatttcaacatacattcaacatgaacttaaataaaaagaaa
tgaatagaactgaaagcataaggatgactttaaaaacatagtaatagaaa
aaagcagagaactgactaaggcaaatagcaataaacctctgtgtaaacat
agcaaagtaaaactgaaattttcctaaggcaatgaaaaaaattttaaaag
aaacagagagaaatcgtcaaagaaataacattatgactaagagacctcat
actctcataccgattcccaataaatagctaaaccaaataggattaccctt
tcaatgtgttaaaagagaatacttgtttgagtatgagatgtcccccaaga
actcacatgtttgaacacttggtctcctaatggtgagagtgttttggaag
gtataaaatttttatgagctttggcccaattgaagaaagaaggtggctgg
gaagccatacattgaaggcgctatctggccctgaacctggaacaaattct
ctacttcctcccgactaccgatatactgtgccacctccttgtctgtagcc
actacaccttccccacacgtcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_53373276_53374303
seq2: B6Ng01-002P09.g_69_1092 (reverse)

seq1  CATGACGGTTGTGGGGAAGGTGTAGTGGGCTACAGGACAAGGAGGTGGCA  50
      |||||||  ||||||||||||||||| ||||||| |||||||||||||||
seq2  CATGACG--TGTGGGGAAGGTGTAGT-GGCTACA-GACAAGGAGGTGGCA  46

seq1  CAGTATATCGGTAGTCGGGAGGAAGTAGAGAATTTGTTCCAGGTTCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATATCGGTAGTCGGGAGGAAGTAGAGAATTTGTTCCAGGTTCAGGG  96

seq1  CCAGATAGCGCCTTCAATGTATGGCTT-CCAGCCACCTTCTTTCTTCAAT  149
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCAGATAGCGCCTTCAATGTATGGCTTCCCAGCCACCTTCTTTCTTCAAT  146

seq1  TGGGCCAAAGCTCATAAAAATTTTATAACCTTCCAAAACACTCTCACCAT  199
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGGGCCAAAGCTCATAAAAATTTTAT-ACCTTCCAAAACACTCTCACCAT  195

seq1  TAGGAGACCAAGTGTTCAAACATGTGAGTTCTTGGGGGACATCTCATACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGACCAAGTGTTCAAACATGTGAGTTCTTGGGGGACATCTCATACT  245

seq1  CAAACAAGTATTCTCTTTTAACACATTGAAAGGGTAATCCTATTTGGTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAGTATTCTCTTTTAACACATTGAAAGGGTAATCCTATTTGGTTT  295

seq1  AGCTATTTATTGGGAATCGGTATGAGAGTATGAGGTCTCTTAGTCATAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTATTGGGAATCGGTATGAGAGTATGAGGTCTCTTAGTCATAAT  345

seq1  GTTATTTCTTTGACGATTTCTCTCTGTTTCTTTTAAAATTTTTTTCATTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCTTTGACGATTTCTCTCTGTTTCTTTTAAAATTTTTTTCATTG  395

seq1  CCTTAGGAAAATTTCAGTTTTACTTTGCTATGTTTACACAGAGGTTTATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGAAAATTTCAGTTTTACTTTGCTATGTTTACACAGAGGTTTATT  445

seq1  GCTATTTGCCTTAGTCAGTTCTCTGCTTTTTTCTATTACTATGTTTTTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGCCTTAGTCAGTTCTCTGCTTTTTTCTATTACTATGTTTTTAA  495

seq1  AGTCATCCTTATGCTTTCAGTTCTATTCATTTCTTTTTATTTAAGTTCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCCTTATGCTTTCAGTTCTATTCATTTCTTTTTATTTAAGTTCAT  545

seq1  GTTGAATGTATGTTGAAATTTATTTTTTCTAACTCCAATATCTTAGCTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATGTATGTTGAAATTTATTTTTTCTAACTCCAATATCTTAGCTAT  595

seq1  TCTTTTGTGTTTTTAAAGTCATGTTACATCCTGTGTAATATATATATGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTGTTTTTAAAGTCATGTTACATCCTGTGTAATATATATATGGA  645

seq1  TGTATTTCTGTGGATAATATTTGGAAATAGCCCAGCATATATAGCTGGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCTGTGGATAATATTTGGAAATAGCCCAGCATATATAGCTGGTG  695

seq1  TTTATATCTCATGTTTTAGTTGAGAAGGAATGTCTAAAATATGATTGCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCTCATGTTTTAGTTGAGAAGGAATGTCTAAAATATGATTGCTC  745

seq1  TTGTTATTTTCTTCTGATTACCTATAGAGAATAGAGGAAGAGAAAACTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTTTCTTCTGATTACCTATAGAGAATAGAGGAAGAGAAAACTAC  795

seq1  TTCTAGAAAACTGAAATGAAAGTGAACATTTGCCTTATCTGAGTTTTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAAAACTGAAATGAAAGTGAACATTTGCCTTATCTGAGTTTTTCT  845

seq1  AAAGCATGAGCTTAAGCCAATATATGTATAGGTATTTTTGCAGATCATAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGAGCTTAAGCCAATATATGTATAGGTATTTTTGCAGATCATAT  895

seq1  CTCAGGGAGATGGAGCGAAGGATGGAAAAGGAAGCAGAGAAGAAATGATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGAGATGGAGCGAAGGATGGAAAAGGAAGCAGAGAAGAAATGATA  945

seq1  TAGCACAAGGTTAGAGGTTCTTTTCCATAATGAGAGACTTGGTAAAGCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAAGGTTAGAGGTTCTTTTCCATAATGAGAGACTTGGTAAAGCAT  995

seq1  ATTCTAGGACCATTGCCTGTACTGAATTC  1028
      |||||||||||||||||||||||||||||
seq2  ATTCTAGGACCATTGCCTGTACTGAATTC  1024