BAC Information

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BAC

Clone NameB6Ng01-003B03
Chromosome9 (Build37)2 (Build37)
Map Location 93,434,991 - 93,435,27112,303,018 - 12,304,183
singlet/doubletsingletsinglet
Overlap geneLOC674371
Upstream genePlod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
Downstream geneLOC384967, EG384968, 1190002N15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003B03.bB6Ng01-003B03.g
ACCDH840899DH840900
length6591,163
definitionDH840899|Mus musculus domesticus DNA, BAC clone: B6Ng01-003B03, 5' end.DH840900|Mus musculus domesticus DNA, BAC clone: B6Ng01-003B03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,434,991 - 93,435,271)(12,303,018 - 12,304,183)
sequence
gaattctttgtttagctctgtatcccatttttaataggattatttggtcc
tctggagtctaacttcttgagttctttgtatatattggatattagccatc
tatcagatgcaggattaataaagatcttttcccaacctgttggttgttgt
tttgtcctattgaccgtgtcctttgtcttacagaagcttttcaattttat
gaggtcccatttgtcaattgttgatcttagagcataagccttcagtgttc
tgttcaggaattttccccttgaactgattagtttaaggctctttccaaaa
ttctcttctcttagatttctcttctctaatctttctcaagattaagttta
tctggttttatgtggaggttcttgacacacttggactagatctttgtaca
aggagataagaatggatcaattttcattcttctacatgctgacctccagt
tgaacaatcaccatttgttgaaattgctggctttttttccactgtatggt
tttgtcttctttgttaaagatcaagtgaccataggtgtttgggtttattt
ctggatctttaattctatttctttgacctacctacctgtctctgtaccaa
taccatgtgttttttgttgttgttgttgttgttttgttttttttttgttt
gtttgtttt
gaattcttagagacgggaccttaccctgggaaacgcgtactcccagagtc
tcttggagtaaggaacctcaaggacacacttttacattgcccgcatcagt
ccacgctctgacactttgttcttaacagcatcagagacattggaaaactt
ttcatagagtaatgagcacttgtcttgtgctagacaccactaaatatctt
agatttaaggctgacagcacttctaagacctaggtactgttaaaaagccc
tactgtaaacacagaggaaaagagcccaagagatgttgcaaagaaactag
ggtttaaatgaaggtgtttgatgccaaagcttttaccaccccactgtgga
aaatattacgtcttgttaaaaagaaagatttagaaaccattttatgtaag
aatctaaaataaaactaaaatggtttcttccacatctcagcaacttctaa
acaaaatcaaaagccagagctcttgagtcagcagagataaagacatgtaa
tggagtcaggaaggacttcactgaggtgactccaaccccagagcaaagca
acagtgttttctgtagtgtgaactgataagatttctgggaaacattccat
ttattactggctggattttcatctgcacaaagatcaaactaaatatggac
tcacaatattacttgtttggctaatatcattgtggaaaaaaaaaagtccc
ctataagcataccttggcaaaaaatacggtgaggtgagtttcgctgccaa
caatccaaatagggaattttggagatttcaagtaagaaccaacctagaat
aaattcagcaaagtaaaacaaataaatgaaagattttatgctgtccctta
aatatttgtgcagaaatatgtgaaacataacagcgttcattaacacttct
taccacagaggttagatggtaagtgcagacaggacctgtgtctaagctta
tactgcatctttaaaccagacactgcaatgcagaatcttacatacacatg
tgtcacagctggaaatgaggactttagatcagaaatcctattataagatt
gtgcccaaagcttctaagcacttcattttgtgactgagaaaagtttaatt
ttgagccataagaacagattacacgctattcatgtttacccaactgatct
ctacactttcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_93434991_93435271
seq2: B6Ng01-003B03.b_630_703

seq1  CTGTCTCTGTACCAATACCATGAGTTTTTTACTTATATTTATTTATTTAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TATTTTTTTACCAATCACTATTGCTCTGAAGTACACCTGGACATCAGGGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGGTAATTCCCTCAGAAGTTCTTTTATTTTTGAGAATTGTTTTTGATATC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTTAGATTTTGTTATTCCATATGAAGTTGAGAACTGCTGTTTCTATCTCT  200
                                                || |||||
seq2  ------------------------------------------CTGTCTCT  8

seq1  GTGAAGAATTAAATTGGAATTTTGAATCTGTAGATTGTTGTTTTGTTTGG  250
      || |  |||   ||  |  |||||          ||||||  |||||  |
seq2  GT-ACCAATACCATGTGTTTTTTG----------TTGTTG--TTGTT--G  43

seq1  TTGTGGTTTTTTGTTTTTGTTTGTTTGTTTT  281
      ||||  | |||| ||||||||||||||||||
seq2  TTGTTTTGTTTTTTTTTTGTTTGTTTGTTTT  74

seq1: chr2_12303018_12304183
seq2: B6Ng01-003B03.g_68_1230

seq1  GAATTCTTAGAGACGGGACCTTACCCTGGGAAACGCGTACTCCCAGAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAGACGGGACCTTACCCTGGGAAACGCGTACTCCCAGAGTC  50

seq1  TCTTGGAGTAAGGAACCTCAAGGACACACTTTTACATTGCCCGCATCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAGTAAGGAACCTCAAGGACACACTTTTACATTGCCCGCATCAGT  100

seq1  CCACGCTCTGACACTTTGTTCTTAACAGCATCAGAGACATTGGAAAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCTCTGACACTTTGTTCTTAACAGCATCAGAGACATTGGAAAACTT  150

seq1  TTCATAGAGTAATGAGCACTTGTCTTGTGCTAGACACCACTAAATATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGAGTAATGAGCACTTGTCTTGTGCTAGACACCACTAAATATCTT  200

seq1  AGATTTAAGGCTGACAGCACTTCTAAGACCTAGGTACTGTTAAAAAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAAGGCTGACAGCACTTCTAAGACCTAGGTACTGTTAAAAAGCCC  250

seq1  TACTGTAAACACAGAGGAAAAGAGCCCAAGAGATGTTGCAAAGAAACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAAACACAGAGGAAAAGAGCCCAAGAGATGTTGCAAAGAAACTAG  300

seq1  GGTTTAAATGAAGGTGTTTGATGCCAAAGCTTTTACCACCCCACTGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAATGAAGGTGTTTGATGCCAAAGCTTTTACCACCCCACTGTGGA  350

seq1  AAATATTACGTCTTGTTAAAAAGAAAGATTTAGAAACCATTTTATGTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTACGTCTTGTTAAAAAGAAAGATTTAGAAACCATTTTATGTAAG  400

seq1  AATCTAAAATAAAACTAAAATGGTTTCTTCCACATCTCAGCAACTTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAAATAAAACTAAAATGGTTTCTTCCACATCTCAGCAACTTCTAA  450

seq1  ACAAAATCAAAAGCCAGAGCTCTTGAGTCAGCAGAGATAAAGACATGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCAAAAGCCAGAGCTCTTGAGTCAGCAGAGATAAAGACATGTAA  500

seq1  TGGAGTCAGGAAGGACTTCACTGAGGTGACTCCAACCCCAGAGCAAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCAGGAAGGACTTCACTGAGGTGACTCCAACCCCAGAGCAAAGCA  550

seq1  ACAGTGTTTTCTGTAGTGTGAACTGATAAGATTTCTGGGAAACATTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTTTCTGTAGTGTGAACTGATAAGATTTCTGGGAAACATTCCAT  600

seq1  TTATTACTGGCTGGATTTTCATCTGCACAAAGATCAAACTAAATATGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACTGGCTGGATTTTCATCTGCACAAAGATCAAACTAAATATGGAC  650

seq1  TCACAATATTACTTGTTTGGCTAATATCATTGTGGAAAAAAAAAAGTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATATTACTTGTTTGGCTAATATCATTGTGGAAAAAAAAAAGTCCC  700

seq1  CTATAAGCATACCTTGGCAAAAAATACGGTGAGGTGAGTTTCGCTGCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGCATACCTTGGCAAAAAATACGGTGAGGTGAGTTTCGCTGCCAA  750

seq1  CAATCCAAATAGGGAATTTTGGAGATTTCAAGTAAGAACCAACCTAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAAATAGGGAATTTTGGAGATTTCAAGTAAGAACCAACCTAGAAT  800

seq1  AAATTCAGCAAAGTAAAACAAATAAATGAAAGATTTTATGCTGTCCCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGCAAAGTAAAACAAATAAATGAAAGATTTTATGCTGTCCCTTA  850

seq1  AATATTTGTGCAGAAATATGTGAAACATAACAGGCGTTCATTAACACTTC  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AATATTTGTGCAGAAATATGTGAAACATAACA-GCGTTCATTAACACTTC  899

seq1  TTACCACAGAGGTTAGATGGTAAGTGCAGACAGGACCTGTGTCTAAGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACAGAGGTTAGATGGTAAGTGCAGACAGGACCTGTGTCTAAGCTT  949

seq1  ATACTGCATCTTTAAACCAGACACTGCAATGCAG-ATCTTACATACACAT  999
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATACTGCATCTTTAAACCAGACACTGCAATGCAGAATCTTACATACACAT  999

seq1  GTGTCACAGCTGGAAATGAGGACTTTAGATCAAGAAATCCTA-TATAAGA  1048
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  GTGTCACAGCTGGAAATGAGGACTTTAGATC-AGAAATCCTATTATAAGA  1048

seq1  TTGTGCCACAAAGCTTCTAAGCACTTCA-TTTGTGACTGAGAAAAAGTTT  1097
      ||||||| |||||||||||||||||||| |||||||||||| ||||||||
seq2  TTGTGCC-CAAAGCTTCTAAGCACTTCATTTTGTGACTGAG-AAAAGTTT  1096

seq1  AATTTTGAGCACATAAG-ACAGATTTACACAGCCTATCATGTTTACACCA  1146
      |||||||||| |||||| ||||| |||||| ||   |||||||||| |||
seq2  AATTTTGAGC-CATAAGAACAGA-TTACAC-GCTATTCATGTTTAC-CCA  1142

seq1  ACTGA-CTCTACACTTCCATG  1166
      ||||| |||||||||| ||||
seq2  ACTGATCTCTACACTTTCATG  1163