BAC Information

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BAC

Clone NameB6Ng01-003G17
Chromosome4 (Build37)2 (Build37)
Map Location 125,693,589 - 125,694,32118,545,075 - 18,546,020
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2
Downstream geneCsf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003G17.bB6Ng01-003G17.g
ACCDH841137DH841138
length802944
definitionDH841137|Mus musculus domesticus DNA, BAC clone: B6Ng01-003G17, 5' end.DH841138|Mus musculus domesticus DNA, BAC clone: B6Ng01-003G17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(125,693,589 - 125,694,321)(18,545,075 - 18,546,020)
sequence
gaattctgaggatttttcaaagggtatataaatgctatggggtgggtggg
ttgttggttggagactacactgtaaccatcctctgacacaccaggagagg
gcattgaatcccgagagggcattgaatcccattacagatgtttgtgagcc
accatgtggttgctgggcattgaactcaggacctctggaagagcagtcag
tacccttagccagtgagccatctctccagcctgcagcaaatgatcttaat
gccttgagccatctctgaagttctcttaaggctgtttcaagatagcggat
ttcccaagttcaacaatctttcctgctttgcctctgagaggggaggaaac
agatccagaggggatcaaatgacctgcttatgtcacacaactagaagctg
gggctctaatcaggccacaccctcacctctcttccagacccacctgactc
ctgacgctggaacttgactctggttctggagtggaattggactctagctg
ggaactgaggggcaggtaggatttgaaaggagagaagggtgtgcggagtg
gagggacctcgggagcaaaggcctgcgctcgcatgcgtgtgtaaagccct
gcatcctggattaggtacaaccttgactctgtataaccttaatcagaact
tgcggtcctgctttcctgggctcccattcatgcctttttagcttctcaga
cactccaaccctcccacctcaacctgagtccttttgcatttttctttgaa
aatctacttcctgttctgtggagtggtgcatctagaagcccctctgcccc
tc
gaattcaggcagccacgtaggctgcagaggatgctgtcagtggctgctgc
ttctctctgctctgcctctagagtcctctttacctggaggctcccgaacc
tgcccttcaggtccataaagacctgggctatctttagagcaattgcatgg
ttctgcagctgttgtgtcagttagaaacgggagtgcataagtttgtctta
ggatacgtaataagaaggaagggtttggctcaatggtggagcacttgcct
accatgcaaatagaaccatccacagaactcagggaaaaacttaagcttcg
tggccttataatcagtaaaggtctcatgtaataatcaccaacattatttt
ctaaatcaatgtccttaagcacagttgccagttcccatcaccctctgtgg
ggtacccctctgtctgccctgagcttattccatgggagtctgaatcatct
ctggaggcatcctttaccatcccggcagataggagcatcatgacgtacct
ggaacagcagccccctgttggcatatatttttgagcttctttttttaggt
tcttatacctaccatccttccaacccctgttccactctaatcccctcccc
gccccccactcccacccattgagtaggaaagaaggttagaggggaaaggg
gtcatagagctctttggattacttcctgctgattagaggggttaggtttc
cagggtcaaggtcaaccagcaatccagcaaaatagcaaaacagcagcatg
gggagcagcagctgccacgggccctctggggcgggggcggggggggggct
cccccttgaccctctccacactcccagattaaccatcttcagatggcaaa
atcatggtcttcctaagcacgagacaacatatctagctctggtggacaac
gtgcagcagctgcagagtccggctcctgggatacaataaaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_125693589_125694321
seq2: B6Ng01-003G17.b_107_843 (reverse)

seq1  GAGGGGCAGAGGGGCTTC-AGATGCGCCACTCAACAGAACAGGAAGTAGA  49
      |||||||||||||||||| |||||| |||||| |||||||||||||||||
seq2  GAGGGGCAGAGGGGCTTCTAGATGCACCACTCCACAGAACAGGAAGTAGA  50

seq1  TTTTCAAAAGAAAATGCAAAGGAACTCAGGTTGGGGTGGG-GGGTTGGAG  98
      ||||||||  |||||||||| | |||||||||| |||||| |||||||||
seq2  TTTTCAAAGAAAAATGCAAAAGGACTCAGGTTGAGGTGGGAGGGTTGGAG  100

seq1  TGTCTGAGAAGCT-AAAAGGCATGAATGGGAGCCCAGG-AAGCAGGACCG  146
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  TGTCTGAGAAGCTAAAAAGGCATGAATGGGAGCCCAGGAAAGCAGGACCG  150

seq1  CAAGTTCTGATTAAGGTTATACAGAGTCAAGGTTGTACCTAATCCAGGAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCTGATTAAGGTTATACAGAGTCAAGGTTGTACCTAATCCAGGAT  200

seq1  GCAGGGCTTTACACACGCATGCGAGCGCAGGCCTTTGCTCCCGAGGTCCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCTTTACACACGCATGCGAGCGCAGGCCTTTGCTCCCGAGGTCCC  250

seq1  TCCACTCCGCACACCCTTCTCTCCTTTCAAATCCTACCTGCCCCTCAGTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCCGCACACCCTTCTCTCCTTTCAAATCCTACCTGCCCCTCAGTT  300

seq1  CCCAGCTAGAGTCCAATTCCACTCCAGAACCAGAGTCAAGTTCCAGCGTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTAGAGTCCAATTCCACTCCAGAACCAGAGTCAAGTTCCAGCGTC  350

seq1  AGGAGTCAGGTGGGTCTGGAAGAGAGGTGAGGGTGTGGCCTGATTAGAGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCAGGTGGGTCTGGAAGAGAGGTGAGGGTGTGGCCTGATTAGAGC  400

seq1  CCCAGCTTCTAGTTGTGTGACATAAGCAGGTCATTTGATCCCCTCTGGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTCTAGTTGTGTGACATAAGCAGGTCATTTGATCCCCTCTGGAT  450

seq1  CTGTTTCCTCCCCTCTCAGAGGCAAAGCAGGAAAGATTGTTGAACTTGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCTCCCCTCTCAGAGGCAAAGCAGGAAAGATTGTTGAACTTGGG  500

seq1  AAATCCGCTATCTTGAAACAGCCTTAAGAGAACTTCAGAGATGGCTCAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCGCTATCTTGAAACAGCCTTAAGAGAACTTCAGAGATGGCTCAAG  550

seq1  GCATTAAGATCATTTGCTGCAGGCTGGAGAGATGGCTCACTGGCTAAGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAAGATCATTTGCTGCAGGCTGGAGAGATGGCTCACTGGCTAAGGG  600

seq1  TACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATGCCCAGCAACCACATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATGCCCAGCAACCACATG  650

seq1  GTGGCTCACAAACATCTGTAATGGGATTCAATGCCCTCTCGGGATTCAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCACAAACATCTGTAATGGGATTCAATGCCCTCTCGGGATTCAAT  700

seq1  GCCCTCTCCTGGTGTGTCAGAGGATGGTTACAGTGTA  733
      |||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTCCTGGTGTGTCAGAGGATGGTTACAGTGTA  737

seq1: chr2_18545075_18546020
seq2: B6Ng01-003G17.g_65_1008

seq1  GAATTCAGGCAGCCACGTAGGCTGCAGAGGATGCTGTCAGTGGCTGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCAGCCACGTAGGCTGCAGAGGATGCTGTCAGTGGCTGCTGC  50

seq1  TTCTCTCTGCTCTGCCTCTAGAGTCCTCTTTACCTGGAGGCTCCCGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTGCTCTGCCTCTAGAGTCCTCTTTACCTGGAGGCTCCCGAACC  100

seq1  TGCCCTTCAGGTCCATAAAGACCTGGGCTATCTTTAGAGCAATTGCATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTCAGGTCCATAAAGACCTGGGCTATCTTTAGAGCAATTGCATGG  150

seq1  TTCTGCAGCTGTTGTGTCAGTTAGAAACGGGAGTGCATAAGTTTGTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAGCTGTTGTGTCAGTTAGAAACGGGAGTGCATAAGTTTGTCTTA  200

seq1  GGATACGTAATAAGAAGGAAGGGTTTGGCTCAATGGTGGAGCACTTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACGTAATAAGAAGGAAGGGTTTGGCTCAATGGTGGAGCACTTGCCT  250

seq1  ACCATGCAAATAGAACCATCCACAGAACTCAGGGAAAAACTTAAGCTTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCAAATAGAACCATCCACAGAACTCAGGGAAAAACTTAAGCTTCG  300

seq1  TGGCCTTATAATCAGTAAAGGTCTCATGTAATAATCACCAACATTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTATAATCAGTAAAGGTCTCATGTAATAATCACCAACATTATTTT  350

seq1  CTAAATCAATGTCCTTAAGCACAGTTGCCAGTTCCCATCACCCTCTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCAATGTCCTTAAGCACAGTTGCCAGTTCCCATCACCCTCTGTGG  400

seq1  GGTACCCCTCTGTCTGCCCTGAGCTTATTCCATGGGAGTCTGAATCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCCTCTGTCTGCCCTGAGCTTATTCCATGGGAGTCTGAATCATCT  450

seq1  CTGGAGGCATCCTTTACCATCCCGGCAGATAGGAGCATCATGACGTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGCATCCTTTACCATCCCGGCAGATAGGAGCATCATGACGTACCT  500

seq1  GGAACAGCAGCCCCCTGTTGGCATATATTTTTGAGCTTCTTTTTTTAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGCAGCCCCCTGTTGGCATATATTTTTGAGCTTCTTTTTTTAGGT  550

seq1  TCTTATACCTACCATCCTTCCAACCCCTGTTCCACTCTAATCCCCTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATACCTACCATCCTTCCAACCCCTGTTCCACTCTAATCCCCTCCCC  600

seq1  GCCCCCCACTCCCACCCATTGAGTAGGAAAGAAGGTTAGAGGGGAAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCACTCCCACCCATTGAGTAGGAAAGAAGGTTAGAGGGGAAAGGG  650

seq1  GTCATAGAGCTCTTTGGATTACTTCCTGCTGATTAGAGGGGTTAGGTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGAGCTCTTTGGATTACTTCCTGCTGATTAGAGGGGTTAGGTTTC  700

seq1  CAGGGTCAAGGTCAACCAGCAATCCAGCAAAATAGCAAAACAGCAGCAGG  750
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGGGTCAAGGTCAACCAGCAATCCAGCAAAATAGCAAAACAGCAGCATG  750

seq1  GGGAGCAGCAGCTGCCACGGGCCCTCTGGGGCGGGGGGCGGGGGGGGGGC  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGGAGCAGCAGCTGCCACGGGCCCTCTGGGGC-GGGGGCGGGGGGGGGGC  799

seq1  TCCCACTTTATTCCCTCTCCAGAGTCCACAGATTAAACCATCTGCAGATG  850
      |||| ||| |  ||||||||| | ||| |||||| |||||||| ||||||
seq2  TCCCCCTTGA--CCCTCTCCACACTCC-CAGATT-AACCATCTTCAGATG  845

seq1  GCAAAAATCATGTTCTTCCTAGAGCACGAGACAATCATAGCTAACGTCT-  899
      || ||||||||| |||||||| |||||||||||| |||| ||| | ||| 
seq2  GC-AAAATCATGGTCTTCCTA-AGCACGAGACAA-CATATCTAGC-TCTG  891

seq1  GTGGACAACCTGAAGCAGCTGCAGA-TCCCACACCTGGG-----ATTAAA  943
      ||||||||| || |||||||||||| |||  | ||||||     || |||
seq2  GTGGACAACGTGCAGCAGCTGCAGAGTCCGGCTCCTGGGATACAATAAAA  941

seq1  ACA  946
      |||
seq2  ACA  944