BAC Information

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BAC

Clone NameB6Ng01-003I14
Chromosome2 (Build37)
Map Location 155,897,167 - 156,020,527
singlet/doubletdoublet
Overlap geneCpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39
Upstream geneAhcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4
Downstream genePhf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003I14.bB6Ng01-003I14.g
ACCDH841217DH841218
length1,134957
definitionDH841217|Mus musculus domesticus DNA, BAC clone: B6Ng01-003I14, 5' end.DH841218|Mus musculus domesticus DNA, BAC clone: B6Ng01-003I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,897,167 - 155,898,314)(156,019,901 - 156,020,527)
sequence
gaattcactgtgtggcccagggttagtaagctaaaggtggtactcctgcc
tcagccgctgcattgctaggactgcagacaggaactttaaatacatgtat
gtgcacaccattgctagagtggcgacctgaggacaactctggagctagtt
ctctcttcctgcctttacatggctcctacgagtagaatttacatggctcc
tatgggtagaactcaggctgttaggcttatacagcaaacattgtacccag
tgagcaacttgcaatgtcccctctatgcttctgcagctctggctgccctc
aaactccaggtgtggtagaagattcccctaaatacatgcaaagaaagccc
gactccagcccgccttaggcccgacacacaacctgcaccaaacacaacaa
gagcggccactgaggaggtggatatattaattttattgatacatagatat
attttttaaaagggtaacatatataaaaataattttacatatggaatata
aaaacatgaaacagtaacagatgagggaaaaatactttcaacatgtcaag
aacaaaataaaagctctaacatacagtttgtgaacaggttactgagaagg
aaatgtgtatgaaataatatagagaaataaatggaaactagaaatgagat
ctggggaaggaaggtgacccacaggttatcagaggtcagatcacccctct
acagaaggcagcctgtaataactgctaacactgcaaatatcacctgcaat
ctctcatttccatactgaaaaaccaactcttcaaaaatgtgtgtaatcac
agtaaatcgaatctctgttgggaagggaactgctaaactctggtatattc
ttacaaaaggacagataatgaaaaagaggaggcagtaagttctggtggat
aagcacccaatataaatgcaaaccagatacaaacagcacacatgtttgct
tttaaagtgttctgtctgacttgaaactcttcgtgtacctcaattcacat
caaactcagagcatccctctgctcagacttctgatgtgggattatacatg
agccacaatctttgttcccatttttatttatataatactgaatactggca
ttaaggagctccccctccctcagtctgcacaaaa
gaattcctcactgtgtgatccacaggacaccaccctgacccctttctttt
gtaaacaatgtctctggagcacaggctgtcccttggccttcctgtcagtt
tctctttttgtccatggtctttaaaagaatactctggaggcagagggaga
cacatgagatccaagccagcctgttctatacagtgagttccagtccagcc
tgggctactgagagagaccctctctcttcttacatttatttgtttatttt
aatgtgtatgtgtgtatacatgcctagaagactcatatgtggaagtcaga
atacaagttgtatgaatctgttctctctatcttctggatgccagggcctt
tctatacttgtttgtttatttatttatttatttatttatttatttattta
tttaggtgtctcggaacaaggtttctctgtgtagttctggctgtcctaga
actcagagatccacctacctctgattcaaaggactaggattaaatgcccg
gttaaagaagatactccagggctggagagatggctcagtggttcagatca
cagactgctcgtccagaggtcctgagttcaattcccagcaaccacaaggt
ggctcacaacacctcttctggtgtgtctaaagacagcaacagtgtattca
tgtacattaaatgaataaataaattgtaaaaaaaaaaaaaaagaagaaga
agatactccagtttttttgtttgtttgtttgtgtgtatatgaatatcttg
cctatatagatttctgtgtactacatgcatgcatggtgcctagagagctg
gattgaacccagcacccagaaccctctggccagtggccagtgctcttaac
ctctgagccacctcaccagcccttctctgaggttctcggtggttctcttt
tgcctctaggcctttgaaagactgttgctgtatgtttgtatttgtatgtt
gggtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_155897167_155898314
seq2: B6Ng01-003I14.b_42_1175

seq1  GAATTCACTGTGTGGCCCAGGGTTAGTAAGCTAAAGGTGGTACTCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTGGCCCAGGGTTAGTAAGCTAAAGGTGGTACTCCTGCC  50

seq1  TCAGCCGCTGCATTGCTAGGACTGCAGACAGGAACTTTAAATACATGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCGCTGCATTGCTAGGACTGCAGACAGGAACTTTAAATACATGTAT  100

seq1  GTGCACACCATTGCTAGAGTGGCGACCTGAGGACAACTCTGGAGCTAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACCATTGCTAGAGTGGCGACCTGAGGACAACTCTGGAGCTAGTT  150

seq1  CTCTCTTCCTGCCTTTACATGGCTCCTACGAGTAGAATTTACATGGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCCTGCCTTTACATGGCTCCTACGAGTAGAATTTACATGGCTCC  200

seq1  TATGGGTAGAACTCAGGCTGTTAGGCTTATACAGCAAACATTGTACCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTAGAACTCAGGCTGTTAGGCTTATACAGCAAACATTGTACCCAG  250

seq1  TGAGCAACTTGCAATGTCCCCTCTATGCTTCTGCAGCTCTGGCTGCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAACTTGCAATGTCCCCTCTATGCTTCTGCAGCTCTGGCTGCCCTC  300

seq1  AAACTCCAGGTGTGGTAGAAGATTCCCCTAAATACATGCAAAGAAAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCAGGTGTGGTAGAAGATTCCCCTAAATACATGCAAAGAAAGCCC  350

seq1  GACTCCAGCCCGCCTTAGGCCCGACACACAACCTGCACCAAACACAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAGCCCGCCTTAGGCCCGACACACAACCTGCACCAAACACAACAA  400

seq1  GAGCGGCCACTGAGGAGGTGGATATATTAATTTTATTGATACATAGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGCCACTGAGGAGGTGGATATATTAATTTTATTGATACATAGATAT  450

seq1  ATTTTTTAAAAGGGTAACATATATAAAAATAATTTTACATATGGAATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAAAGGGTAACATATATAAAAATAATTTTACATATGGAATATA  500

seq1  AAAACATGAAACAGTAACAGATGAGGGAAAAATACTTTCAACATGTCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGAAACAGTAACAGATGAGGGAAAAATACTTTCAACATGTCAAG  550

seq1  AACAAAATAAAAGCTCTAACATACAGTTTGTGAACAGGTTACTGAGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATAAAAGCTCTAACATACAGTTTGTGAACAGGTTACTGAGAAGG  600

seq1  AAATGTGTATGAAATAATATAGAGAAATAAATGGAAACTAGAAATGAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTATGAAATAATATAGAGAAATAAATGGAAACTAGAAATGAGAT  650

seq1  CTGGGGAAGGAAGGTGACCCACAGGTTATCAGAGGTCAGATCACCCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAGGAAGGTGACCCACAGGTTATCAGAGGTCAGATCACCCCTCT  700

seq1  ACAGAAGGCAGCCTGTAATAACTGCTAACACTGCAAATATCACCTGCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGCAGCCTGTAATAACTGCTAACACTGCAAATATCACCTGCAAT  750

seq1  CTCTCATTTCCATACTGAAAAACCAACTCTTCAAAAATGTGTGTAATCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATTTCCATACTGAAAAACCAACTCTTCAAAAATGTGTGTAATCAC  800

seq1  AGTAAATCGAATCTCTGTTGGGAAGGGAACTGCTAAACTCTGGTATATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATCGAATCTCTGTTGGGAAGGGAACTGCTAAACTCTGGTATATTC  850

seq1  TTACAAAAGGACAGATAATGAAAAAGAGGAGGCAGTAAGTTCTGGTGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAAGGACAGATAATGAAAAAGAGGAGGCAGTAAGTTCTGGTGGAT  900

seq1  AAGGCACCCAATATAAATGCAAACCAGATACAAACAGCACACATGTTTGC  950
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-GCACCCAATATAAATGCAAACCAGATACAAACAGCACACATGTTTGC  949

seq1  TTTTAAAGTTGTTCTGTCTGACCTGAAACTCCTCGTGTACCTCAAATTCA  1000
      |||||||| ||||||||||||| |||||||| ||||||||||| ||||||
seq2  TTTTAAAG-TGTTCTGTCTGACTTGAAACTCTTCGTGTACCTC-AATTCA  997

seq1  CATCAAACTCAGAGCAACCCTCCTGCCTCAGACTTCTGAGTGTTGGGATT  1050
      |||||||||||||||| |||| ||| ||||||||||||| || |||||||
seq2  CATCAAACTCAGAGCATCCCT-CTG-CTCAGACTTCTGA-TG-TGGGATT  1043

seq1  ATAACCATGAGCCACCAATCTTTGTTCCCATTTTCTATTTTTATATAATA  1100
      |||  ||||||||| |||||||||||||||||||   | |||||||||||
seq2  ATA--CATGAGCCA-CAATCTTTGTTCCCATTTT---TATTTATATAATA  1087

seq1  CTG-ATACCTGCATTTAGGAGCTCCCCTCCCCCCAGTCTGCAAACAAAA  1148
      ||| ||||  ||||| |||||||||||  ||| ||||||||  ||||||
seq2  CTGAATACTGGCATTAAGGAGCTCCCCCTCCCTCAGTCTGC--ACAAAA  1134

seq1: chr2_156019901_156020527
seq2: B6Ng01-003I14.g_66_692 (reverse)

seq1  GACACACCAGAAGAGGTGTTGTGAGCCACCTTGTGGTTGCTGGGAATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACCAGAAGAGGTGTTGTGAGCCACCTTGTGGTTGCTGGGAATTGA  50

seq1  ACTCAGGACCTCTGGACGAGCAGTCTGTGATCTGAACCACTGAGCCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGACCTCTGGACGAGCAGTCTGTGATCTGAACCACTGAGCCATCT  100

seq1  CTCCAGCCCTGGAGTATCTTCTTTAACCGGGCATTTAATCCTAGTCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCCTGGAGTATCTTCTTTAACCGGGCATTTAATCCTAGTCCTTT  150

seq1  GAATCAGAGGTAGGTGGATCTCTGAGTTCTAGGACAGCCAGAACTACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGAGGTAGGTGGATCTCTGAGTTCTAGGACAGCCAGAACTACACA  200

seq1  GAGAAACCTTGTTCCGAGACACCTAAATAAATAAATAAATAAATAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCTTGTTCCGAGACACCTAAATAAATAAATAAATAAATAAATAA  250

seq1  ATAAATAAATAAACAAACAAGTATAGAAAGGCCCTGGCATCCAGAAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAACAAACAAGTATAGAAAGGCCCTGGCATCCAGAAGATA  300

seq1  GAGAGAACAGATTCATACAACTTGTATTCTGACTTCCACATATGAGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACAGATTCATACAACTTGTATTCTGACTTCCACATATGAGTCTT  350

seq1  CTAGGCATGTATACACACATACACATTAAAATAAACAAATAAATGTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCATGTATACACACATACACATTAAAATAAACAAATAAATGTAAGA  400

seq1  AGAGAGAGGGTCTCTCTCAGTAGCCCAGGCTGGACTGGAACTCACTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGGGTCTCTCTCAGTAGCCCAGGCTGGACTGGAACTCACTGTAT  450

seq1  AGAACAGGCTGGCTTGGATCTCATGTGTCTCCCTCTGCCTCCAGAGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGGCTGGCTTGGATCTCATGTGTCTCCCTCTGCCTCCAGAGTATT  500

seq1  CTTTTAAAGACCATGGACAAAAAGAGAAACTGACAGGAAGGCCAAGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAGACCATGGACAAAAAGAGAAACTGACAGGAAGGCCAAGGGAC  550

seq1  AGCCTGTGCTCCAGAGACATTGTTTACAAAAGAAAGGGGTCAGGGTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTGCTCCAGAGACATTGTTTACAAAAGAAAGGGGTCAGGGTGGTG  600

seq1  TCCTGTGGATCACACAGTGAGGAATTC  627
      |||||||||||||||||||||||||||
seq2  TCCTGTGGATCACACAGTGAGGAATTC  627