BAC Information

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BAC

Clone NameB6Ng01-003L21
Chromosome2 (Build37)
Map Location 143,874,096 - 144,020,270
singlet/doubletdoublet
Overlap gene4930517K23Rik, LOC627160, EG433481
Upstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
Downstream geneSnx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003L21.bB6Ng01-003L21.g
ACCDH841356DH841357
length1,0751,073
definitionDH841356|Mus musculus domesticus DNA, BAC clone: B6Ng01-003L21, 5' end.DH841357|Mus musculus domesticus DNA, BAC clone: B6Ng01-003L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,019,182 - 144,020,270)(143,874,096 - 143,875,183)
sequence
gaattcttttctgttgtaaagcattggattgtaccagagtggaggtccct
aagggagattggggaactcctcaggctgtgaggggcagcgccttgctccc
tctcactgttgacaaagtgtcagtgttttgttttcattcattcattcatt
cattcattcatttacccgttcattcatcttcatccaataactgtccctac
cgtctttgcctggctcacggttgttaagggaacaaatggctttggatcca
tcatgctccccgaaacccactcaagggcactcagatgaacttaagggata
aaggctcctctacagggaacccccaggatacctgttactgagaacaagca
gttgtcagtcacccccacccccttcacggagactcttgtcaatgagccta
tagtcacaatatcgatgctacagagaagcattcacatccccaatcctgcc
agttatcagttttcccctaaagacagctgggcagctaggcccactctgct
aaaggacaatgtcaggttttacagcctccagctatttccctggtcacctc
accaggccgtcttcctcatctgatccttgttggccctcaattatcatacc
taactcacctttccttcaagaccctcccatgaccccagtttgagggtcaa
gtggtgaatgtaaccgttagtgtctcttcccccaatgtaatcatctcaca
caaaaccatcaggaaacactcacaaaaaggctttccaacacacacacaca
cacacacacacacacacacacacacacacacacacacacagaggctgctg
agtgtccagcacagagattttcctccaggctagttctgccttcactgatg
ttggcaacactgtagcagaaaaactgtacaatgcaaatgggttaataatc
atagacatgtcaattgtatccaatggaatatgtgtacttgctattgctct
gtgctaacttttgcatataatgaagttcatctcagcactcagataccaga
gtgtgtggctcttacacttttccttggaactaggtggatattttcaccat
gttccttaattagccaatggagtga
gaattcttggaaactctaaggtcaggcaacttggcaggcagcagcaagat
accctgagacagggtcaaaagtgaggacagacattagagattgtcctctg
acctccacgtgtgtgctgtggtgcactcactcaggcactcaaacaaacac
gcacaggtacacacaagcaggcacacatatcatgtgtgtgcacgaatata
cactccaagacaaatgaagaaagaacaaatgaagtcagccaaatctgact
ctgcaggatgtagaacatcttcaccatttttcagaattgactcatatttt
gactttataattaccagtgctgatatttcctcttcacataaatatgtaat
acaaatggcagaagcatgcttaggaccatctcagaaactgttagaaactc
tgtcctcatcccaagctaacattcattgaacaatttttttatgtgtatga
aaaaaaactaggcaattcaaatatcaattcttaaagtattcccacacaga
gttgtattttatgggatggtaatctcccccacccctgccaaaaaaaaaaa
aaacaaacccctatagactacctaccaaaaccccagtgctaacaggagtt
attgaccagggtggcacaataaccctctccaaacagtacagatgattgcc
gttgccctcggttgccttccttaacttgaaagtaaaagcctattactgaa
gacattgaacactttggatgcaggtcttggagaaatccagttggggctac
ctgcagactggctctcatagtatcagaaggtgttgtgaaaactgccaaga
gaaaaaagctgtaaatcctgggaaccactacagttaccagcctggcaagg
tagcccctgtggtgcaatagtggcattttttatcttggggtaaccaacaa
ttgtctaattagacttaaggctctctcagtcgaggagacttcatcagcca
ttatcatactggagaggccataggctgagaggagactactgcgctgccct
tttctaagcaatataattctagctgtattctatactatcttctaccagat
agtgtggctatcacctctcatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_144019182_144020270
seq2: B6Ng01-003L21.b_47_1121 (reverse)

seq1  TCACTCCATTGGCTAATAAGGGAACAT-GTGAAAATATCCCAACTAGTTC  49
      ||||||||||||||||| | ||||||| |||||||||| ||| |||||||
seq2  TCACTCCATTGGCTAATTAAGGAACATGGTGAAAATAT-CCACCTAGTTC  49

seq1  CAAGGAAAAGTGTAAGAGCCACACACCTCTGGGTTATCTGAGTGCTGAGA  99
      ||||||||||||||||||||||||| ||||||  ||||||||||||||||
seq2  CAAGGAAAAGTGTAAGAGCCACACA-CTCTGG--TATCTGAGTGCTGAGA  96

seq1  TGAACTTCCATTATATGCAAAAGTTAGCAACAGGGCAATAGCAAGTACAA  149
      ||||||| |||||||||||||||||||| |||| |||||||||||||| |
seq2  TGAACTT-CATTATATGCAAAAGTTAGC-ACAGAGCAATAGCAAGTAC-A  143

seq1  CATATTCCATTGGATACAATTGACATGTCTATGATTA-TAAACCATTTGC  198
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  CATATTCCATTGGATACAATTGACATGTCTATGATTATTAACCCATTTGC  193

seq1  ATTGTTACAGTTTTTCTGCTACAGTGTTGCCAACATCAGTGAAGGCAGAA  248
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTG-TACAGTTTTTCTGCTACAGTGTTGCCAACATCAGTGAAGGCAGAA  242

seq1  CTAGCCTGGAGG-AAATCTCTGTGCTGGACACTCAGCAGCCTCTGTGTGT  297
      |||||||||||| ||||||||||||||||||||||||||||||       
seq2  CTAGCCTGGAGGAAAATCTCTGTGCTGGACACTCAGCAGCCTC-------  285

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  347
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ---TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  332

seq1  GTGTGTTGGAAAGCC-TTTTGTGAGTGTTTCCTGATGGTTTTGTGTGAGA  396
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGGAAAGCCTTTTTGTGAGTGTTTCCTGATGGTTTTGTGTGAGA  382

seq1  TGATTACATTGGGGGAAGAGACACTAACGGTTACATTCACCACTTGACCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACATTGGGGGAAGAGACACTAACGGTTACATTCACCACTTGACCC  432

seq1  TCAAACTGGGGTCATGGGAGGGTCTTGAAGGAAAGGTGAGTTAGGTATGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTGGGGTCATGGGAGGGTCTTGAAGGAAAGGTGAGTTAGGTATGA  482

seq1  TAATTGAGGGCCAACAAGGATCAGATGAGGAAGACGGCCTGGTGAGGTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAGGGCCAACAAGGATCAGATGAGGAAGACGGCCTGGTGAGGTGA  532

seq1  CCAGGGAAATAGCTGGAGGCTGTAAAACCTGACATTGTCCTTTAGCAGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAAATAGCTGGAGGCTGTAAAACCTGACATTGTCCTTTAGCAGAG  582

seq1  TGGGCCTAGCTGCCCAGCTGTCTTTAGGGGAAAACTGATAACTGGCAGGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTAGCTGCCCAGCTGTCTTTAGGGGAAAACTGATAACTGGCAGGA  632

seq1  TTGGGGATGTGAATGCTTCTCTGTAGCATCGATATTGTGACTATAGGCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGATGTGAATGCTTCTCTGTAGCATCGATATTGTGACTATAGGCTC  682

seq1  ATTGACAAGAGTCTCCGTGAAGGGGGTGGGGGTGACTGACAACTGCTTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAAGAGTCTCCGTGAAGGGGGTGGGGGTGACTGACAACTGCTTGT  732

seq1  TCTCAGTAACAGGTATCCTGGGGGTTCCCTGTAGAGGAGCCTTTATCCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTAACAGGTATCCTGGGGGTTCCCTGTAGAGGAGCCTTTATCCCT  782

seq1  TAAGTTCATCTGAGTGCCCTTGAGTGGGTTTCGGGGAGCATGATGGATCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCATCTGAGTGCCCTTGAGTGGGTTTCGGGGAGCATGATGGATCC  832

seq1  AAAGCCATTTGTTCCCTTAACAACCGTGAGCCAGGCAAAGACGGTAGGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATTTGTTCCCTTAACAACCGTGAGCCAGGCAAAGACGGTAGGGA  882

seq1  CAGTTATTGGATGAAGATGAATGAACGGGTAAATGAATGAATGAATGAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATTGGATGAAGATGAATGAACGGGTAAATGAATGAATGAATGAAT  932

seq1  GAATGAATGAAAACAAAACACTGACACTTTGTCAACAGTGAGAGGGAGCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATGAAAACAAAACACTGACACTTTGTCAACAGTGAGAGGGAGCA  982

seq1  AGGCGCTGCCCCTCACAGCCTGAGGAGTTCCCCAATCTCCCTTAGGGACC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCTGCCCCTCACAGCCTGAGGAGTTCCCCAATCTCCCTTAGGGACC  1032

seq1  TCCACTCTGGTACAATCCAATGCTTTACAACAGAAAAGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCTGGTACAATCCAATGCTTTACAACAGAAAAGAATTC  1075

seq1: chr2_143874096_143875183
seq2: B6Ng01-003L21.g_66_1138

seq1  GAATTCTTGGAAACTCTAAGGTCAGGCAACTTGGCAGGCAGCAGCAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGAAACTCTAAGGTCAGGCAACTTGGCAGGCAGCAGCAAGAT  50

seq1  ACCCTGAGACAGGGTCAAAAGTGAGGACAGACATTAGAGATTGTCCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAGACAGGGTCAAAAGTGAGGACAGACATTAGAGATTGTCCTCTG  100

seq1  ACCTCCACGTGTGTGCTGTGGTGCACTCACTCAGGCACTCAAACAAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCACGTGTGTGCTGTGGTGCACTCACTCAGGCACTCAAACAAACAC  150

seq1  GCACAGGTACACACAAGCAGGCACACATATCATGTGTGTGCACGAATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGTACACACAAGCAGGCACACATATCATGTGTGTGCACGAATATA  200

seq1  CACTCCAAGACAAATGAAGAAAGAACAAATGAAGTCAGCCAAATCTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAAGACAAATGAAGAAAGAACAAATGAAGTCAGCCAAATCTGACT  250

seq1  CTGCAGGATGTAGAACATCTTCACCATTTTTCAGAATTGACTCATATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGATGTAGAACATCTTCACCATTTTTCAGAATTGACTCATATTTT  300

seq1  GACTTTATAATTACCAGTGCTGATATTTCCTCTTCACATAAATATGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATAATTACCAGTGCTGATATTTCCTCTTCACATAAATATGTAAT  350

seq1  ACAAATGGCAGAAGCATGCTTAGGACCATCTCAGAAACTGTTAGAAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGCAGAAGCATGCTTAGGACCATCTCAGAAACTGTTAGAAACTC  400

seq1  TGTCCTCATCCCAAGCTAACATTCATTGAACAATTTTTTTATGTGTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCATCCCAAGCTAACATTCATTGAACAATTTTTTTATGTGTATGA  450

seq1  AAAAAAACTAGGCAATTCAAATATCAATTCTTAAAGTATTCCCACACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACTAGGCAATTCAAATATCAATTCTTAAAGTATTCCCACACAGA  500

seq1  GTTGTATTTTATGGGATGGTAATCTCCCCCACCCCTGCCAAAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATTTTATGGGATGGTAATCTCCCCCACCCCTGCCAAAAAAAAAAA  550

seq1  AAACAAACCCCTATAGACTACCTACCAAAACCCCAGTGCTAACAGGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACCCCTATAGACTACCTACCAAAACCCCAGTGCTAACAGGAGTT  600

seq1  ATTGACCAGGGTGGCACAATAACCCTCTCCAAACAGTACAGATGATTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCAGGGTGGCACAATAACCCTCTCCAAACAGTACAGATGATTGCC  650

seq1  GTTGCCCTCGGTTGCCTTCCTTAACTTGAAAGTAAAAGCCTATTACTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCCTCGGTTGCCTTCCTTAACTTGAAAGTAAAAGCCTATTACTGAA  700

seq1  GACATTGAACACTTTGGATGCAGGTCTTGGAGAAATCCAGTTGGGGCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGAACACTTTGGATGCAGGTCTTGGAGAAATCCAGTTGGGGCTAC  750

seq1  CTGCAGACTGGCTCTCATAGTATCAGAAGGTGTTGTGAAAACTGCCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGACTGGCTCTCATAGTATCAGAAGGTGTTGTGAAAACTGCCAAGA  800

seq1  GAAAAAAGCTGTAAATCCTGGGAACCACTACAGTTACCAGCCTGGCAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGCTGTAAATCCTGGGAACCACTACAGTTACCAGCCTGGCAAGG  850

seq1  TAGCCCCTGTGGTGCAATAGTGGCATTTTTTATCTTGGGGTAACCAACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCTGTGGTGCAATAGTGGCATTTTTTATCTTGGGGTAACCAACAA  900

seq1  TTGTCTAATTAGACTTAAGGCTCTCTCAGTCGAGGAGACTTCATCAGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGTCTAATTAGACTTAAGGCTCTCTCAGTCGAGGAGACTTCATCAGCC-  949

seq1  ATTATCCATACCTGGAGAGGCCATAGGCTGAGAGGAGAACCTACTGCCGC  1000
      ||||| |||| |||||||||||||||||||||||||||  |||||| |||
seq2  ATTAT-CATA-CTGGAGAGGCCATAGGCTGAGAGGAGA--CTACTG-CGC  994

seq1  TGCCCTTTTCCTAAAGCAATATAATTTCTAGCTGTATTCTAAATACTTAT  1050
      ||||||||||   ||||||||||| |||||||||||||||  |||| |||
seq2  TGCCCTTTTC--TAAGCAATATAA-TTCTAGCTGTATTCT--ATAC-TAT  1038

seq1  CCTTCTACCCAGATAAGTGTGGCTATCACCTCTCATCA  1088
       |||||| |||||| |||||||||||||||||||||||
seq2  -CTTCTA-CCAGAT-AGTGTGGCTATCACCTCTCATCA  1073