BAC Information

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BAC

Clone NameB6Ng01-003M19
Chromosome2 (Build37)
Map Location 138,771,685 - 138,773,041
singlet/doubletsinglet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003M19.bB6Ng01-003M19.g
ACCDH841397DH841398
length1,172987
definitionDH841397|Mus musculus domesticus DNA, BAC clone: B6Ng01-003M19, 5' end.DH841398|Mus musculus domesticus DNA, BAC clone: B6Ng01-003M19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaaggtcaaaaattcaggtgacagc
agatgctggggaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactactggaggatccagcaatacctctcgtgggc
atatatccagaagatgtcccaactggtaagaaagaaacatgctgcactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gctcctcaacagaggaatggatacagaaaatgtggtacatctatacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagtcaa
attgatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaatc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggactctatgcccctcctcagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccaa
tggaggagctagagaagtacccaaggagctaaagggatctgcatccttat
aggtggacaacattatgaactaccagtaccctgagctcttgactctagct
gcttatgattcaagaatggcctaatttgtcatccttggaaagaaagccca
ttgggacacaaactttattgctcagtacaggaagtcatgggccaataagt
ggcatggtgtgtggtaagtgga

gaattcctgcttccagtcaagaagaggactgtgtgtctgagcccagacaa
aactcattgagtattcttgaggcctatatctgagaaggcatgtactatga
catctaggcaagcagaagggagattgtatggagacacttccatgcacttt
gatcctctcttcaatgcccttgctaagtgcatcttctctccaggtagcta
aagctaatatattattttcttgtcatctttcaaatttggtttgtgaagtc
attctgaatttccttgacaggctgctgatacaaggtcagaaataacattt
ctttcttacattaaagctggattcctaacaaacagaaactggaatgtgga
tttaaaagtatatgatgaattgggaaagtacttttaggaaaagggtgggg
aggagttcaggatgggacagaggagaaagacaagaatgagttgggttcag
cagagggtaagatgcagtctgatcccacatgatgggaattggagactaag
ttccaacttagaacagggctgtgcaagtttcctcttttctgaatgagttt
cagcctcttcaaaactgagtgtaatctcctgtaaatttctcagtgagtta
actgcagtgaactacatgcgatactcaggaaaatgtcaatggttatctgg
gagacagttgctgggtctgggtgtgtcacacaaaaggtatctctggatgc
tgactagaggttatctacccaagaccctgtctaaggaagaactgcttttt
atatattgaaatctgtgtcaagttatctagccaaggaagaaaactcttgc
actttactgtgttaggatgttttattcaattgtcatcagggatccagcct
gacatgaatataactgtcttgtttgtaactctgccttccatttcatcttc
tacacatgataatcaaaatcagtaaggtgtttagcacatatttcatctgg
gccacagatgtacaaatattcagacatttcttttccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_138771685_138773041
seq2: B6Ng01-003M19.g_69_1055

seq1  GAATTCCTGCTTCCAGTCAAGAAGAGGACTGTGTGTCTGAGCCCAGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTTCCAGTCAAGAAGAGGACTGTGTGTCTGAGCCCAGACAA  50

seq1  AACTCATTGAGTATTCTTGAGGCCTATATCTGAGAAGGCATGTACTATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATTGAGTATTCTTGAGGCCTATATCTGAGAAGGCATGTACTATGA  100

seq1  CATCTAGGCAAGCAGAAGGGAGATTGTATGGAGACACTTCCATGCACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGGCAAGCAGAAGGGAGATTGTATGGAGACACTTCCATGCACTTT  150

seq1  GATCCTCTCTTCAATGCCCTTGCTAAGTGCATCTTCTCTCCAGGTAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCTCTTCAATGCCCTTGCTAAGTGCATCTTCTCTCCAGGTAGCTA  200

seq1  AAGCTAATATATTATTTTCTTGTCATCTTTCAAATTTGGTTTGTGAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAATATATTATTTTCTTGTCATCTTTCAAATTTGGTTTGTGAAGTC  250

seq1  ATTCTGAATTTCCTTGACAGGCTGCTGATACAAGGTCAGAAATAACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAATTTCCTTGACAGGCTGCTGATACAAGGTCAGAAATAACATTT  300

seq1  CTTTCTTACATTAAAGCTGGATTCCTAACAAACAGAAACTGGAATGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTACATTAAAGCTGGATTCCTAACAAACAGAAACTGGAATGTGGA  350

seq1  TTTAAAAGTATATGATGAATTGGGAAAGTACTTTTAGGAAAAGGGTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTATATGATGAATTGGGAAAGTACTTTTAGGAAAAGGGTGGGG  400

seq1  AGGAGTTCAGGATGGGACAGAGGAGAAAGACAAGAATGAGTTGGGTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTCAGGATGGGACAGAGGAGAAAGACAAGAATGAGTTGGGTTCAG  450

seq1  CAGAGGGTAAGATGCAGTCTGATCCCACATGATGGGAATTGGAGACTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGTAAGATGCAGTCTGATCCCACATGATGGGAATTGGAGACTAAG  500

seq1  TTCCAACTTAGAACAGGGCTGTGCAAGTTTCCTCTTTTCTGAATGAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACTTAGAACAGGGCTGTGCAAGTTTCCTCTTTTCTGAATGAGTTT  550

seq1  CAGCCTCTTCAAAACTGAGTGTAATCTCCTGTAAATTTCTCAGTGAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTTCAAAACTGAGTGTAATCTCCTGTAAATTTCTCAGTGAGTTA  600

seq1  ACTGCAGTGAACTACATGCGATACTCAGGAAAATGTCAATGGTTATCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGTGAACTACATGCGATACTCAGGAAAATGTCAATGGTTATCTGG  650

seq1  GAGACAGTTGCTGGGTCTGGGTGTGTCACACAAAAGGTATCTCTGGATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGTTGCTGGGTCTGGGTGTGTCACACAAAAGGTATCTCTGGATGC  700

seq1  TGACTAGAGGTTATCTACCCAAGACCCTGTCTAAGGAAGAACTGCTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGAGGTTATCTACCCAAGACCCTGTCTAAGGAAGAACTGCTTTTT  750

seq1  ATATATTGAAATCTGTGTCAAGTTATCTAGCCAAGGAAGAAAACTCTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGAAATCTGTGTCAAGTTATCTAGCCAAGGAAGAAAACTCTTGC  800

seq1  ACTTTACTGTGTTAGGATGTTTTATTCAATTGTCATCAGGGATCCAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACTGTGTTAGGATGTTTTATTCAATTGTCATCAGGGATCCAGCCT  850

seq1  GACATGAATATAACTGTCTTGTTTGTAACTCTGCCTTCCATTTCATCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAATATAACTGTCTTGTTTGTAACTCTGCCTTCCATTTCATCTTC  900

seq1  TACACATGATAATCAAAATCAGTAAGGTGTTTAGCACATATTTCATCTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGATAATCAAAATCAGTAAGGTGTTTAGCACATATTTCATCTGG  950

seq1  GCCACAGATGTACAAAATATTCAGACATTTTCTTTTTC-TGTTCTTCTTT  999
      ||||||||||||| ||||||||||||| |||||||| |            
seq2  GCCACAGATGTAC-AAATATTCAGACA-TTTCTTTTCCG-----------  987

seq1  CTTTCTTTCTTTTTCTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTT  1049
                                                        
seq2  --------------------------------------------------  987

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGCTTCTTTGTGTAGCCC  1099
                                                        
seq2  --------------------------------------------------  987

seq1  TGGTTGTCCTGGAACTCACTTTGTAGACCAGACTGGCCTCGAACTCAGAA  1149
                                                        
seq2  --------------------------------------------------  987

seq1  ATCCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGTGCCAC  1199
                                                        
seq2  --------------------------------------------------  987

seq1  CACGCCCAGCCAGACATTTTCTTAAAAGGTTGGTATATTGATAGTTTAGT  1249
                                                        
seq2  --------------------------------------------------  987

seq1  TGTGGTTTTTGAGAAATTCTACATATACTCTAAGGGATTGGCTTCATCTC  1299
                                                        
seq2  --------------------------------------------------  987

seq1  TCCTTGTTTGCCTGTCTGCTAGCCTTAGAGTACAGGATCTGAGAAAAGAT  1349
                                                        
seq2  --------------------------------------------------  987

seq1  TTTGCCCG  1357
              
seq2  --------  987


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