BAC Information

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BAC

Clone NameB6Ng01-003N07
Chromosome10 (Build37)2 (Build37)
Map Location 110,448,548 - 110,449,33897,720,817 - 97,720,992
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042497, LOC100042502, LOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17
Downstream geneEG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003N07.bB6Ng01-003N07.g
ACCDH841421DH841422
length816186
definitionDH841421|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N07, 5' end.DH841422|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(110,448,548 - 110,449,338)(97,720,817 - 97,720,992)
sequence
gaattcctagtttttcgttcacagcaccgaaattttcttcagtcacgtgt
cagcatgaacagactcttttttttttttcctgtaatattacaggctcgat
ctccttacccttaggcttttgcatttacccaaatctaggggaaaaaaaaa
gagtaaagaaacagttgagagggtgtggcattcaaaccaacatgaaatga
acgacagaactaggtatggggaacaaaaacaaaataatttgtatgagtgc
ccatggagtgcaggtgtatggtggacatcttcataaaagaggtgttcaac
ctgagaagcctgggttcacagagggctttgaaagaacggtccaaattaat
tgagtcagcaaaatctactgtttagcccacgtggtggtttggtaatttaa
aaagctgtaggttaactagataacaaaattaagtaaatcaagatatttct
ttttttttttttaatgtagggattttgttgttggttttgttttgtcgttg
gctctttcttctttctgtccactatgagtcaacctgctttttccatgatg
ctcccactaccacgatgcttggcttcactcaggccaagaatcaatgaaga
caaagataactgaaacctccaaaaccatagaccgaaattaatccttcctc
gtctgaagaaagaaagaaagagagagagaaggaaggaaagaaagagagag
aaggaaggaaagagagagagagggaaggaaggaaggaaagaaagatagga
aggaatgaagaaatgatagattgatagaaagatataaagattgaaataaa
gaaagaaagaaagaaa
tctttatctgttgggtctttgtgtggtttaggtatcagagtaaatgtggc
ttcatagaatgaattggatagtgttcattctgtttctattttgtcgaata
ttttgaagactattgataataggtcttctttgaatgtgtgatagaattct
tcactaaacctataatgtcctgggctttttttttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_110448548_110449338
seq2: B6Ng01-003N07.b_47_862

seq1  GAATTCCTAGTTTTTCGTTCACAGCACCGAAATTTTCTTCAGTCACGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTTTTTCGTTCACAGCACCGAAATTTTCTTCAGTCACGTGT  50

seq1  CAGCATGAACAGACTCTTTTTTTTTTTTCCTGTAATATTACAGGCTCGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGAACAGACTCTTTTTTTTTTTTCCTGTAATATTACAGGCTCGAT  100

seq1  CTCCTTACCCTTAGGCTTTTGCATTTACCCAAATCTAGGGGAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTACCCTTAGGCTTTTGCATTTACCCAAATCTAGGGGAAAAAAAAA  150

seq1  GAGTAAAGAAACAGTTGAGAGGGTGTGGCATTCAAACCAACATGAAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAGAAACAGTTGAGAGGGTGTGGCATTCAAACCAACATGAAATGA  200

seq1  ACGACAGAACTAGGTATGGGGAACAAAAACAAAATAATTTGTATGAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACAGAACTAGGTATGGGGAACAAAAACAAAATAATTTGTATGAGTGC  250

seq1  CCATGGAGTGCAGGTGTATGGTGGACATCTTCATAAAAGAGGTGTTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGTGCAGGTGTATGGTGGACATCTTCATAAAAGAGGTGTTCAAC  300

seq1  CTGAGAAGCCTGGGTTCACAGAGGGCTTTGAAAGAACGGTCCAAATTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGCCTGGGTTCACAGAGGGCTTTGAAAGAACGGTCCAAATTAAT  350

seq1  TGAGTCAGCAAAATCTACTGTTTAGCCCACGTGGTGGTTTGGTAATTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAGCAAAATCTACTGTTTAGCCCACGTGGTGGTTTGGTAATTTAA  400

seq1  AAAGCTGTAGGTTAACTAGATAACAAAATTAAGTAAATCAAGATATTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTAGGTTAACTAGATAACAAAATTAAGTAAATCAAGATATTTCT  450

seq1  TTTTTTTTTTTTAATGTAGGGATTTTGTTGTTGGTTTTGTTTTGTCGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTAATGTAGGGATTTTGTTGTTGGTTTTGTTTTGTCGTTG  500

seq1  GCTCTTTCTTCTTTCTGTCCACTATGAGTCAACCTGCTTTTTCCATGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTCTTCTTTCTGTCCACTATGAGTCAACCTGCTTTTTCCATGATG  550

seq1  CTCCCACTACCACGATGCTTGGCTTCACTCAGGCCAAGAATCAATGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTACCACGATGCTTGGCTTCACTCAGGCCAAGAATCAATGAAGA  600

seq1  CAAAGATAACTGAAACCTCCAAAACCATAGACCGAAATTAATCCTTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATAACTGAAACCTCCAAAACCATAGACCGAAATTAATCCTTCCTC  650

seq1  GTCTGAAGAAAGAAAGAAAGAGAGAGAGAAGGAAGGAAAGAAAGAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGAAAGAAAGAAAGAGAGAGAGAAGGAAGGAAAGAAAGAGAGAG  700

seq1  AAGGAAGGAAAGAGAGAGAGAGGGAAGGAAGGAAGGAAAGAAAGAAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGGAAGGAAAGAGAGAGAGAGGGAAGGAAGGAAGGAAAGAAAGATAGGA  750

seq1  AGGAAGGAAGAA-------------AGAAA------------GAAAGAAA  775
      ||||| ||||||             |||||            |||| |||
seq2  AGGAATGAAGAAATGATAGATTGATAGAAAGATATAAAGATTGAAATAAA  800

seq1  GAAAGAAAGAAAGAAA  791
      ||||||||||||||||
seq2  GAAAGAAAGAAAGAAA  816

seq1: chr2_97720817_97720992
seq2: B6Ng01-003N07.g_82_259 (reverse)

seq1  CCAAAAAAAAAGCCCAGGACCAGATGGATTTAGT--AGAGTTCTATCAGA  48
      ||||||||||||||||||||   || | ||||||  ||| |||||||| |
seq2  CCAAAAAAAAAGCCCAGGACATTATAGGTTTAGTGAAGAATTCTATCACA  50

seq1  CCTTTAAAGAAGATCTA--ATCCAAGTTCTTCACAAACTATTCCACAAAA  96
      | || |||||||| |||  ||| |   ||||  |||| ||||| ||||||
seq2  CATTCAAAGAAGACCTATTATCAATAGTCTT--CAAAATATTCGACAAAA  98

seq1  TAGAAACAGAAAGTACTCTACCCAACTCATTCTATGAAGCCACAATTACT  146
      ||||||||||| | || ||| |||| |||||||||||||||||| |||||
seq2  TAGAAACAGAATGAACACTATCCAATTCATTCTATGAAGCCACATTTACT  148

seq1  CTGATACCTAAACCACAAAAAGACCCAACA  176
      ||||||||||||||||| ||||||||||||
seq2  CTGATACCTAAACCACACAAAGACCCAACA  178