BAC Information

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BAC

Clone NameB6Ng01-004A12
Chromosome2 (Build37)
Map Location 92,885,560 - 93,049,143
singlet/doubletdoublet
Overlap geneLOC100042784, Trp53i11, C230071H18Rik, Tspan18
Upstream genePhf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1, Syt13
Downstream geneLOC100042789, LOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004A12.bB6Ng01-004A12.g
ACCDH841554DH841555
length1,079654
definitionDH841554|Mus musculus domesticus DNA, BAC clone: B6Ng01-004A12, 5' end.DH841555|Mus musculus domesticus DNA, BAC clone: B6Ng01-004A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,048,075 - 93,049,143)(92,885,560 - 92,886,213)
sequence
gaattcaaaacactgtggagctgacagagcacaagggacaggctgagctt
ccatggggctcctggtctagggagaggtggtagatggtgatccagtgaat
gaagtgatccttgcccacagcggtggttctgagagtgaagacagattgaa
tgaagtgctagagtgtgcatgggccagagcttagggtactcgaagctcca
agggagggcattactgggctgagacctagtcccatgagctcagtttgata
ccaagagctcagctcttgacttcataccttccctaggataggccagagcg
cagtgtctctcacacatcctgccttcctaccctgggggaaagagacagaa
atgaggaggaagggccccgggatgtgaatggaaagagcaggcatgaaggt
ttggattgcagggatctatggttagagcgagtagaatttgggaaggattg
aaagatatggggagcctcacgcttccattgccgacgggcctaggctgaca
cctgcccagggaaagtcaagcctccctgtttcattaccactctgctggag
aaagtccgccacagcccaggaaagtgaggcagaagcttgcttctgctctc
tcgcaaaggccatggaaccacacacatttaaccaagggaaagcacactct
ggtgactgagtcacacccttctgagaaaagtgctatacccccaacttcag
ccagaatgcaggaccaggaccccaagtcctgaactttctaccgcaagata
ccttcccctgtgagcatcctcttgctggctcctgcactgaggaccacaca
gccatatcgattctccatcacagagcctcttcagcccagtgagactaact
cccaggactggtcctcccacacccattccccgctgagccatactttctgt
taggagcccccactggggagaccatctccggttgggttatctccagaacc
tgcctcccacaaagcccagggacccatttgtgtgactggcacagcccaga
cttctgagagtatggagttcctttggggacgaatgtgggctaggtggcca
ctttggcctgctgaaggactgggaagtca
gaattcccgaagagtccgtgctgcaaccaagacttaaaatagataaaagg
cacgccctccctctgccgccccaggcccgcggcaggtcacagagaggcat
gcggtccctaagccccccagcccggccccgaagcaccggcgaccgggtcc
ctgcaactaggccagcggctgcatcccgccctcgccccgccctgccccct
gtctacgcgctctctttgcgaacgccgggcccgaacagccgctcccattg
gccggcggccgcgtccgtcagcgcgcggcggagccgaggaaaaggctaca
gtggaacaaggcgggcgagtgcgcggaggaaggaggcggaggctgggccg
cccgaggcccgcgtcgggcggtggcgacgacctgcgggcccgggccacct
tgagacccgccccgcttccggtgctccggtccgtgccccgtcgcctgcct
gcgcccccgctccccagtgtccccgcgcgctcttcgccgcggcccccgcg
ccggttggcgagccgcccagcgtcttcctaagccatgttcacgttcatgg
ccacggtggccaccgggcccactcaccttcgcgggctcccacgcggggtg
gcgagccgggccggggccggggcggcgggactcttcgggacggggcggcc
gcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_93048075_93049143
seq2: B6Ng01-004A12.b_47_1125 (reverse)

seq1  TGACTTCCCAGTCCTACAGCA-GCCAAAGTGCCAACCTAG-CCACATTCG  48
      ||||||||||||||| ||||| ||||||||| | |||||| |||||||||
seq2  TGACTTCCCAGTCCTTCAGCAGGCCAAAGTGGCCACCTAGCCCACATTCG  50

seq1  TCCCCAAAGGAACTCCATACTCT-AGAAGTCTGGCTTGTGCCAGT--CAC  95
      ||||||||||||||||||||||| ||||||||||  |||||||||  |||
seq2  TCCCCAAAGGAACTCCATACTCTCAGAAGTCTGGGCTGTGCCAGTCACAC  100

seq1  AAATGTGT-CCTGGGCTTTGTGGGAGGCA-GTTCTGGAGATAACCCAACT  143
      ||||| || |||||||||||||||||||| ||||||||||||||||||| 
seq2  AAATGGGTCCCTGGGCTTTGTGGGAGGCAGGTTCTGGAGATAACCCAACC  150

seq1  GGAGATGGTCT-CCCAGTGGGGGCTCCTAACAGAAAGTATGGCTCAGCGG  192
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGTCTCCCCAGTGGGGGCTCCTAACAGAAAGTATGGCTCAGCGG  200

seq1  GG-ATGGGTGTGGGAGGACCAGTCCTGGGAGTTAGTCTCACTGGGCCTGA  241
      || |||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGAATGGGTGTGGGAGGACCAGTCCTGGGAGTTAGTCTCACTGGG-CTGA  249

seq1  AGAGGCTCTGTGATGGAGAATCGATATGGCTGTGTGGTCCTCAGTGCAGG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTCTGTGATGGAGAATCGATATGGCTGTGTGGTCCTCAGTGCAGG  299

seq1  AGCCAGCAAGAGGATGCTCACAGGGGAAGGTATCTTGCGGTAG-AAGTTC  340
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCCAGCAAGAGGATGCTCACAGGGGAAGGTATCTTGCGGTAGAAAGTTC  349

seq1  AGGACTTGGGGTCCTGGTCCTGCATTCTGGCTGAAGTTGGGGGTATAGCA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTGGGGTCCTGGTCCTGCATTCTGGCTGAAGTTGGGGGTATAGCA  399

seq1  C-TTTCTCAGAAGGGTGTGACTCAGTCACCAGAGTGTGCTTTCCCTTGGT  439
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCAGAAGGGTGTGACTCAGTCACCAGAGTGTGCTTTCCCTTGGT  449

seq1  TAAATGTGTGTGGTTCCATGGCCTTTGCGAGAGAGCAGAAGCAAGCTTCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGTGTGGTTCCATGGCCTTTGCGAGAGAGCAGAAGCAAGCTTCT  499

seq1  GCCTCACTTTCCTGGGCTGTGGCGGACTTTCTCCAGCAGAGTGGTAATGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACTTTCCTGGGCTGTGGCGGACTTTCTCCAGCAGAGTGGTAATGA  549

seq1  AACAGGGAGGCTTGACTTTCCCTGGGCAGGTGTCAGCCTAGGCCCGTCGG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGAGGCTTGACTTTCCCTGGGCAGGTGTCAGCCTAGGCCCGTCGG  599

seq1  CAATGGAAGCGTGAGGCTCCCCATATCTTTCAATCCTTCCCAAATTCTAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAAGCGTGAGGCTCCCCATATCTTTCAATCCTTCCCAAATTCTAC  649

seq1  TCGCTCTAACCATAGATCCCTGCAATCCAAACCTTCATGCCTGCTCTTTC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCTAACCATAGATCCCTGCAATCCAAACCTTCATGCCTGCTCTTTC  699

seq1  CATTCACATCCCGGGGCCCTTCCTCCTCATTTCTGTCTCTTTCCCCCAGG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACATCCCGGGGCCCTTCCTCCTCATTTCTGTCTCTTTCCCCCAGG  749

seq1  GTAGGAAGGCAGGATGTGTGAGAGACACTGCGCTCTGGCCTATCCTAGGG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAGGCAGGATGTGTGAGAGACACTGCGCTCTGGCCTATCCTAGGG  799

seq1  AAGGTATGAAGTCAAGAGCTGAGCTCTTGGTATCAAACTGAGCTCATGGG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATGAAGTCAAGAGCTGAGCTCTTGGTATCAAACTGAGCTCATGGG  849

seq1  ACTAGGTCTCAGCCCAGTAATGCCCTCCCTTGGAGCTTCGAGTACCCTAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTCTCAGCCCAGTAATGCCCTCCCTTGGAGCTTCGAGTACCCTAA  899

seq1  GCTCTGGCCCATGCACACTCTAGCACTTCATTCAATCTGTCTTCACTCTC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGCCCATGCACACTCTAGCACTTCATTCAATCTGTCTTCACTCTC  949

seq1  AGAACCACCGCTGTGGGCAAGGATCACTTCATTCACTGGATCACCATCTA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCACCGCTGTGGGCAAGGATCACTTCATTCACTGGATCACCATCTA  999

seq1  CCACCTCTCCCTAGACCAGGAGCCCCATGGAAGCTCAGCCTGTCCCTTGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTCCCTAGACCAGGAGCCCCATGGAAGCTCAGCCTGTCCCTTGT  1049

seq1  GCTCTGTCAGCTCCACAGTGTTTTGAATTC  1069
      ||||||||||||||||||||||||||||||
seq2  GCTCTGTCAGCTCCACAGTGTTTTGAATTC  1079

seq1: chr2_92885560_92886213
seq2: B6Ng01-004A12.g_69_722

seq1  GAATTCCCGAAGAGTCCGTGCTGCAACCAAGACTTAAAATAGATAAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGAAGAGTCCGTGCTGCAACCAAGACTTAAAATAGATAAAAGG  50

seq1  CACGCCCTCCCTCTGCCGCCCCAGGCCCGCGGCAGGTCACAGAGAGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCCTCCCTCTGCCGCCCCAGGCCCGCGGCAGGTCACAGAGAGGCAT  100

seq1  GCGGTCCCTAAGCCCCCCAGCCCGGCCCCGAAGCACCGGCGACCGGGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCCCTAAGCCCCCCAGCCCGGCCCCGAAGCACCGGCGACCGGGTCC  150

seq1  CTGCAACTAGGCCAGCGGCTGCATCCCGCCCTCGCCCCGCCCTGCCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACTAGGCCAGCGGCTGCATCCCGCCCTCGCCCCGCCCTGCCCCCT  200

seq1  GTCTACGCGCTCTCTTTGCGAACGCCGGGCCCGAACAGCCGCTCCCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACGCGCTCTCTTTGCGAACGCCGGGCCCGAACAGCCGCTCCCATTG  250

seq1  GCCGGCGGCCGCGTCCGTCAGCGCGCGGCGGAGCCGAGGAAAAGGCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGCGGCCGCGTCCGTCAGCGCGCGGCGGAGCCGAGGAAAAGGCTACA  300

seq1  GTGGAACAAGGCGGGCGAGTGCGCGGAGGAAGGAGGCGGAGGCTGGGCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACAAGGCGGGCGAGTGCGCGGAGGAAGGAGGCGGAGGCTGGGCCG  350

seq1  CCCGAGGCCCGCGTCGGGCGGTGGCGACGACCTGCGGGCCCGGGCCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGGCCCGCGTCGGGCGGTGGCGACGACCTGCGGGCCCGGGCCACCT  400

seq1  TGAGACCCGCCCCGCTTCCGGTGCTCCGGTCCGTGCCCCGTCGCCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCCGCCCCGCTTCCGGTGCTCCGGTCCGTGCCCCGTCGCCTGCCT  450

seq1  GCGCCCCCGCTCCCCAGTGTCCCCGCGCGCTCTTCGCCGCGGCCCCCGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCCCGCTCCCCAGTGTCCCCGCGCGCTCTTCGCCGCGGCCCCCGCG  500

seq1  CCGGTTGGCGAGCCGCCCAGCGTCTTCCGAAGCCATGTTCACGTTCATGG  550
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCGGTTGGCGAGCCGCCCAGCGTCTTCCTAAGCCATGTTCACGTTCATGG  550

seq1  CCACGGTGGCCACCGGGCCCACTCACCTTCGCGGGCTCCCACGCGGGGCG  600
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCACGGTGGCCACCGGGCCCACTCACCTTCGCGGGCTCCCACGCGGGGTG  600

seq1  GCGAGCCGGGCCGGGGCCGGGGCGGCGGGACGCGGCGGGACGGGGCGGCC  650
      ||||||||||||||||||||||||||||||| |  |||||||||||||||
seq2  GCGAGCCGGGCCGGGGCCGGGGCGGCGGGACTCTTCGGGACGGGGCGGCC  650

seq1  GCGC  654
      ||||
seq2  GCGC  654