BAC Information

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BAC

Clone NameB6Ng01-004D03
Chromosome2 (Build37)
Map Location 53,691,693 - 53,838,679
singlet/doubletdoublet
Overlap genenone
Upstream geneFmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876, LOC207933
Downstream geneRprm, LOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004D03.bB6Ng01-004D03.g
ACCDH841675DH841676
length1,1411,090
definitionDH841675|Mus musculus domesticus DNA, BAC clone: B6Ng01-004D03, 5' end.DH841676|Mus musculus domesticus DNA, BAC clone: B6Ng01-004D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,691,693 - 53,692,848)(53,837,567 - 53,838,679)
sequence
gaattctctctgttcttagtttgttttgataacttaggaaaatcatttgt
ccccttggatccccagctttcttatttctaagattaaaaacaatatcttg
gcccataatcactttgaacttgaaaatattgagttaggtctccagttaaa
tagtcacaaatatttaattcaatgttacctaaataataaataagcatcca
ataaatcaattaattaattgttattattaatcatattaattagttagttg
tagaatgggatatcataaattcccagcattccatttagtacctttagtac
cttaatcacttacatgcagctattgcttgtgagtgttacagggaatatca
taaatataaattatctctttccatcaccttttattttagatggttagttg
actggagaacagttaaattttttctctatccttcaaatataagttagaac
ctagagtccttatatagcaaaattggccacttattataaatttttatgtg
tcagcaataaggtctttgtccactgcagttttcaagtcatttggcagctg
gtttaaatctcttgaagcatagctttaggaaccccacacttctatacccg
acacttccatggattttatttcagaagctcatggaagactgaaaaagtct
cccgcattgctctacataattactgttaatgggtcatttcggggaggcat
attctgaagtgttacaagagtctgctgcccagtgaaaatgcctttcccag
ggctttatcctataaaagggtaggggacatttcctctcctggttctctgt
acatttcctgtctccaataaggggagaaagatagtaggaatgtgggcttt
aagaaagaacagtatgtttgatgttacatggacaaacaggatataagaag
aattactaggttgcttgggaaacagttatgaaacccaagcccagacacag
gcccaatttaaaacaaacaaacaaacaaaactaaactgcaattagattat
agatggtactcctcctccctcattagaggctgtagcacaaaagcacagat
acctgaaagactataagtgtagagtgtgtgtttttttgtttttacttcag
aaatgcttaattccaagagatcagaacatactaaaatattg
gaattccatattcattgagaaaaacccattttcctccttgcaagccacat
acaatcagcaaacaccgacacagcagatatgcttttaattagagacaaac
tcattgggaaggggtctgacttccctgttcctttttatttgcagagaaaa
tgacaatctactgggtactgaatggtatttgaaaggccgggtgcacaaat
ctctgcccaccagaagtatatttatactcaagtcaactaaaatgatacaa
gaaatgtgacatgcagaaataatagaggtgtatccccaaaagcctgccca
atggcagaaatgagcaccacatacatttggatgatactagataacacatc
acttcatttttccatgagaaaaattttgtccctaaaagtatagactagaa
aaatttaatgttagcatttaatgagttctgtttcttggattcagtctcaa
gcccacacacattgatgaattttttaaccaataagttatcctctcatagt
taataatcaaagagccaaatattatattcatttatcctatgatgttatta
atatacaattataaataactgaccttttcctgaattccaaatttattctc
atagagaaattatatggatgcatagtttattatattatatataatagtag
tgagttgttaaatatgtctagcagattttttcaaatggccagagtttgtt
ttgtgcaaaacttaagtaagtaaagttggaaagtattctgaaaggaacaa
gaagcatggcttgcttagcaaagaaaaatattggcagctatatgccaaga
tttgggggctgggcaggtatagggtcagctgcctgatggttattttgcta
ttaaagtccctgactcatttgcttttgccacctctacaagcacatgttgg
cttcatcctaaggctaattagccttgctttcataaagacaaaaggctcta
gcaaaacctttaaattagttagctgtgatcatgagtcacagtcactctga
tggatacagcacagatttgctatgcacagtgacactgacagtgttcactg
cgagttcatatgacgtgaatgtctgcagtaattttgtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_53691693_53692848
seq2: B6Ng01-004D03.b_45_1185

seq1  GAATTCTCTCTGTTCTTAGTTTGTTTTGATAACTTAGGAAAATCATTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGTTCTTAGTTTGTTTTGATAACTTAGGAAAATCATTTGT  50

seq1  CCCCTTGGATCCCCAGCTTTCTTATTTCTAAGATTAAAAACAATATCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGGATCCCCAGCTTTCTTATTTCTAAGATTAAAAACAATATCTTG  100

seq1  GCCCATAATCACTTTGAACTTGAAAATATTGAGTTAGGTCTCCAGTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATAATCACTTTGAACTTGAAAATATTGAGTTAGGTCTCCAGTTAAA  150

seq1  TAGTCACAAATATTTAATTCAATGTTACCTAAATAATAAATAAGCATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACAAATATTTAATTCAATGTTACCTAAATAATAAATAAGCATCCA  200

seq1  ATAAATCAATTAATTAATTGTTATTATTAATCATATTAATTAGTTAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCAATTAATTAATTGTTATTATTAATCATATTAATTAGTTAGTTG  250

seq1  TAGAATGGGATATCATAAATTCCCAGCATTCCATTTAGTACCTTTAGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGGGATATCATAAATTCCCAGCATTCCATTTAGTACCTTTAGTAC  300

seq1  CTTAATCACTTACATGCAGCTATTGCTTGTGAGTGTTACAGGGAATATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCACTTACATGCAGCTATTGCTTGTGAGTGTTACAGGGAATATCA  350

seq1  TAAATATAAATTATCTCTTTCCATCACCTTTTATTTTAGATGGTTAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAAATTATCTCTTTCCATCACCTTTTATTTTAGATGGTTAGTTG  400

seq1  ACTGGAGAACAGTTAAATTTTTTCTCTATCCTTCAAATATAAGTTAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAACAGTTAAATTTTTTCTCTATCCTTCAAATATAAGTTAGAAC  450

seq1  CTAGAGTCCTTATATAGCAAAATTGGCCACTTATTATAAATTTTTATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTCCTTATATAGCAAAATTGGCCACTTATTATAAATTTTTATGTG  500

seq1  TCAGCAATAAGGTCTTTGTCCACTGCAGTTTTCAAGTCATTTGGCAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAATAAGGTCTTTGTCCACTGCAGTTTTCAAGTCATTTGGCAGCTG  550

seq1  GTTTAAATCTCTTGAAGCATAGCTTTAGGAACCCCACACTTCTATACCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATCTCTTGAAGCATAGCTTTAGGAACCCCACACTTCTATACCCG  600

seq1  ACACTTCCATGGATTTTATTTCAGAAGCTCATGGAAGACTGAAAAAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCCATGGATTTTATTTCAGAAGCTCATGGAAGACTGAAAAAGTCT  650

seq1  CCCGCATTGCTCTACATAATTACTGTTAATGGGTCATTTCGGGGAGGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCATTGCTCTACATAATTACTGTTAATGGGTCATTTCGGGGAGGCAT  700

seq1  ATTCTGAAGTGTTACAAGAGTCTGCTGCCCAGTGAAAATGCCTTTCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAGTGTTACAAGAGTCTGCTGCCCAGTGAAAATGCCTTTCCCAG  750

seq1  GGCTTTATCCTATAAAAGGGTAGGGGACATTTCCTCTCCTGGTTCTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTATCCTATAAAAGGGTAGGGGACATTTCCTCTCCTGGTTCTCTGT  800

seq1  ACATTTCCTGTCTCCAATAAGGGGAGAAAGATAGTAGGAATGTGGGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCTGTCTCCAATAAGGGGAGAAAGATAGTAGGAATGTGGGCTTT  850

seq1  AAGAAAGAACAGTATGTTTGATGTTACATGGACAAACAGGATATAAGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAACAGTATGTTTGATGTTACATGGACAAACAGGATATAAGAAG  900

seq1  AATTACTAGGTTGCTTGGGAAACAGTTATGAAACCCAAGCCCAGACACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTAGGTTGCTTGGGAAACAGTTATGAAACCCAAGCCCAGACACAG  950

seq1  GCCCAATTTAAAACAAACAAACAAACAAAAACTAAACTGCAATTAGATTA  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCCCAATTTAAAACAAACAAACAAAC-AAAACTAAACTGCAATTAGATTA  999

seq1  TAGATGGTTACCTCCTCCTCCCTCATTAAGAGGGCTGTAGCACAAAAGCA  1050
      ||||||||   |||||||||||||||| ||| ||||||||||||||||| 
seq2  TAGATGGT--ACTCCTCCTCCCTCATT-AGA-GGCTGTAGCACAAAAGC-  1044

seq1  ACAGAATACACTGAAAGGACTATAAAGTGTAAGAGTGTGTGTGTGTGTGT  1100
      |||| |||| |||||| |||||| |||||| ||||||||||| | | |||
seq2  ACAG-ATAC-CTGAAA-GACTAT-AAGTGT-AGAGTGTGTGTTTTTTTGT  1089

seq1  GTGTACTTCAGAAATGCTAAATTCCAAAGGAGATCAAAGACAATACTAAA  1150
       | ||||||||||||||| ||||||||  ||||||  |||  ||||||||
seq2  TTTTACTTCAGAAATGCTTAATTCCAA--GAGATC--AGAACATACTAAA  1135

seq1  ATATTG  1156
      ||||||
seq2  ATATTG  1141

seq1: chr2_53837567_53838679
seq2: B6Ng01-004D03.g_65_1154 (reverse)

seq1  TTTACCAAAAATTTACTGCAGACATTTCACGTCATTATGAAACTCGCAGT  50
      |||||   ||| |||||||||||| ||||||||| |||| ||||||||||
seq2  TTTAC---AAAATTACTGCAGACA-TTCACGTCA-TATG-AACTCGCAGT  44

seq1  GAACACTGGTTCAGTGTCACTGGTGCATAGCAAAATTCTGGTGGCTTGTA  100
      ||||||||  ||||||||||| ||||||||||||  ||| |||   ||||
seq2  GAACACTG--TCAGTGTCACT-GTGCATAGCAAA--TCT-GTG--CTGTA  86

seq1  TCCATTCAGAGTGGACTGGTGACTTCAATTGATCACAGCTAACTAATTTT  150
      |||| ||||||| |||| ||||| |||  ||||||||||||||||| |||
seq2  TCCA-TCAGAGT-GACT-GTGAC-TCA--TGATCACAGCTAACTAA-TTT  129

seq1  AAAGGTTTTTGCTAGAGCCTTTTGTCTTTATTGAAAGCAAGGCTAATTAG  200
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAGG-TTTTGCTAGAGCCTTTTGTCTTTA-TGAAAGCAAGGCTAATTAG  177

seq1  CCTTAGGATGAAGCCAACATGTGCTTGTAGAGGTGGCAAAAGCAAATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGATGAAGCCAACATGTGCTTGTAGAGGTGGCAAAAGCAAATGAG  227

seq1  TCAGGGACTTTAATAGCAAAATAACCATCAGGCAGCTGACCCTATACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGACTTTAATAGCAAAATAACCATCAGGCAGCTGACCCTATACCTG  277

seq1  CCCAGCCCCCAAATCTTGGCATATAGCTGCCAATATTTTTCTTTGCTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCCCAAATCTTGGCATATAGCTGCCAATATTTTTCTTTGCTAAG  327

seq1  CAAGCCATGCTTCTTGTTCCTTTCAGAATACTTTCCAACTTTACTTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCATGCTTCTTGTTCCTTTCAGAATACTTTCCAACTTTACTTACTT  377

seq1  AAGTTTTGCACAAAACAAACTCTGGCCATTTGAAAAAATCTGCTAGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGCACAAAACAAACTCTGGCCATTTGAAAAAATCTGCTAGACAT  427

seq1  ATTTAACAACTCACTACTATTATATATAATATAATAAACTATGCATCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACAACTCACTACTATTATATATAATATAATAAACTATGCATCCAT  477

seq1  ATAATTTCTCTATGAGAATAAATTTGGAATTCAGGAAAAGGTCAGTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCTCTATGAGAATAAATTTGGAATTCAGGAAAAGGTCAGTTATT  527

seq1  TATAATTGTATATTAATAACATCATAGGATAAATGAATATAATATTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTGTATATTAATAACATCATAGGATAAATGAATATAATATTTGGC  577

seq1  TCTTTGATTATTAACTATGAGAGGATAACTTATTGGTTAAAAAATTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGATTATTAACTATGAGAGGATAACTTATTGGTTAAAAAATTCATC  627

seq1  AATGTGTGTGGGCTTGAGACTGAATCCAAGAAACAGAACTCATTAAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGTGGGCTTGAGACTGAATCCAAGAAACAGAACTCATTAAATGC  677

seq1  TAACATTAAATTTTTCTAGTCTATACTTTTAGGGACAAAATTTTTCTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTAAATTTTTCTAGTCTATACTTTTAGGGACAAAATTTTTCTCAT  727

seq1  GGAAAAATGAAGTGATGTGTTATCTAGTATCATCCAAATGTATGTGGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATGAAGTGATGTGTTATCTAGTATCATCCAAATGTATGTGGTGC  777

seq1  TCATTTCTGCCATTGGGCAGGCTTTTGGGGATACACCTCTATTATTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTGCCATTGGGCAGGCTTTTGGGGATACACCTCTATTATTTCTG  827

seq1  CATGTCACATTTCTTGTATCATTTTAGTTGACTTGAGTATAAATATACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCACATTTCTTGTATCATTTTAGTTGACTTGAGTATAAATATACTT  877

seq1  CTGGTGGGCAGAGATTTGTGCACCCGGCCTTTCAAATACCATTCAGTACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGGCAGAGATTTGTGCACCCGGCCTTTCAAATACCATTCAGTACC  927

seq1  CAGTAGATTGTCATTTTCTCTGCAAATAAAAAGGAACAGGGAAGTCAGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGATTGTCATTTTCTCTGCAAATAAAAAGGAACAGGGAAGTCAGAC  977

seq1  CCCTTCCCAATGAGTTTGTCTCTAATTAAAAGCATATCTGCTGTGTCGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCAATGAGTTTGTCTCTAATTAAAAGCATATCTGCTGTGTCGGT  1027

seq1  GTTTGCTGATTGTATGTGGCTTGCAAGGAGGAAAATGGGTTTTTCTCAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTGATTGTATGTGGCTTGCAAGGAGGAAAATGGGTTTTTCTCAAT  1077

seq1  GAATATGGAATTC  1113
      |||||||||||||
seq2  GAATATGGAATTC  1090