BAC Information

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BAC

Clone NameB6Ng01-004E12
Chromosome2 (Build37)
Map Location 51,603,821 - 51,770,688
singlet/doubletdoublet
Overlap genePpia-ps2_635.1
Upstream geneLOC227885, Rnd3, LOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426
Downstream geneRbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb, LOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2, Fmnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004E12.bB6Ng01-004E12.g
ACCDH841739DH841740
length1,081815
definitionDH841739|Mus musculus domesticus DNA, BAC clone: B6Ng01-004E12, 5' end.DH841740|Mus musculus domesticus DNA, BAC clone: B6Ng01-004E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,603,821 - 51,604,905)(51,769,873 - 51,770,688)
sequence
gaattcagtatttttattagatagcactgccaagggagctagtaactaca
ctagagagccataattcaaaagtaacaatgagaggagatggggatattta
aagccccagattcattttataagcaccaagtaaagtgatctatattagag
ccataatccaagatgtgcctattcaagttaggagggttggaatttatgaa
gcattccacataatagccctctctttggttttgtgacacatttcttccta
ttaaactatttgcatgtcttttaccttctgagccatatacagctggattc
acagacatgctgaacttgcattgcattaaaatctcctctcaagacactcc
tactttgttactttatagcatcagatatcatctcaagcaggccaagattc
ccagtgccagcctgttaagtggcatcactagtaccatgccactgctttcc
tttgtccttgagttgagcttattgttgagacatgcttgaatttcagtaaa
atttgaatcatactattacactagcacatgatattatattatagtaatag
agtaatgcatagttttatatactaattcttgagacagtgtagcaagcatt
tttcacatgttaatttattaatccttatataattctagaagatagacacc
actattacctctattttttctgaagaatctccttagagagattacctggg
atttatagagttaataaattacaaaactaaaaatatactggttaaacacc
cttgtcaaggtttattacaacttattttaactattaaaaaaatgactgcc
aatcaaatggcatgtccacgtggtttcagtgtccataggatttctatttt
atctgggctcaaaagacaggtgagcttacacacatgtgtaagatccaaat
gctgaaaattagaaatatgctgataaaaacaaacctaagaaaacttagta
aacacattgttcattccctgaaaacctaaacatggtaaggatatcatctg
aagtcatgtcccagaattctctggaaaatggtgatgctattttaaatcca
tctgggaaggcaaactatatagacctgctaa
gaattctttgtcctgcagagcctgtcaacctgtgacttcagggatcagcc
tgagtccattggcaagattacacatgcattagaaatgcaacaatcacaga
ctttagagagtaaagttacgattgcacattaaaacggacttgagagacct
attacctaagacaatctatggaccttacttgagtcatagagcaaacatca
ttcttaaagtgatctttgtgagacaaccagggaaattcgatcaggaataa
aagttatattatggaattattatttgttttattaggtgtggtaatggtat
cttggcaatgctaaaaattccttaactattaatgttttcatggaatcact
tgatgccaaaactcattataaaatattctacaaaggggttggagagatgg
ctcagcagttagagcactgactgctcttccgaaggtcctgagtaatccca
gcaaccacgtggtggctctcgaccatccgtaatgagatctggcgccctct
tctggtgtgtctgaggacagccacagtgtacttacatataataaataaat
ctttaaaaatatttctacaaaggtgggatgcagcttagtttttagatatt
ttgtctagtaatctacgataaagtgataaggtgtgctcatatccctgact
ctcttctgtcttttctctgtctcttctctgagtagtggatatagaagaca
ttaacggatttagcttgatagttgttggaacaggcgttcattgaaccatt
gttgtacttttgtgagttctgaaaaattctgtgagaaataaagatgaggt
ctgaaaagtgtttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_51603821_51604905
seq2: B6Ng01-004E12.b_47_1127

seq1  GAATTCAGTATTTTTATTAGATAGCACTGCCAAGGGAGCTAGTAACTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATTTTTATTAGATAGCACTGCCAAGGGAGCTAGTAACTACA  50

seq1  CTAGAGAGCCATAATTCAAAAGTAACAATGAGAGGAGATGGGGATATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAGCCATAATTCAAAAGTAACAATGAGAGGAGATGGGGATATTTA  100

seq1  AAGCCCCAGATTCATTTTATAAGCACCAAGTAAAGTGATCTATATTAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCAGATTCATTTTATAAGCACCAAGTAAAGTGATCTATATTAGAG  150

seq1  CCATAATCCAAGATGTGCCTATTCAAGTTAGGAGGGTTGGAATTTATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATCCAAGATGTGCCTATTCAAGTTAGGAGGGTTGGAATTTATGAA  200

seq1  GCATTCCACATAATAGCCCTCTCTTTGGTTTTGTGACACATTTCTTCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCACATAATAGCCCTCTCTTTGGTTTTGTGACACATTTCTTCCTA  250

seq1  TTAAACTATTTGCATGTCTTTTACCTTCTGAGCCATATACAGCTGGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTATTTGCATGTCTTTTACCTTCTGAGCCATATACAGCTGGATTC  300

seq1  ACAGACATGCTGAACTTGCATTGCATTAAAATCTCCTCTCAAGACACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATGCTGAACTTGCATTGCATTAAAATCTCCTCTCAAGACACTCC  350

seq1  TACTTTGTTACTTTATAGCATCAGATATCATCTCAAGCAGGCCAAGATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTTACTTTATAGCATCAGATATCATCTCAAGCAGGCCAAGATTC  400

seq1  CCAGTGCCAGCCTGTTAAGTGGCATCACTAGTACCATGCCACTGCTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCAGCCTGTTAAGTGGCATCACTAGTACCATGCCACTGCTTTCC  450

seq1  TTTGTCCTTGAGTTGAGCTTATTGTTGAGACATGCTTGAATTTCAGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTTGAGTTGAGCTTATTGTTGAGACATGCTTGAATTTCAGTAAA  500

seq1  ATTTGAATCATACTATTACACTAGCACATGATATTATATTATAGTAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATCATACTATTACACTAGCACATGATATTATATTATAGTAATAG  550

seq1  AGTAATGCATAGTTTTATATACTAATTCTTGAGACAGTGTAGCAAGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGCATAGTTTTATATACTAATTCTTGAGACAGTGTAGCAAGCATT  600

seq1  TTTCACATGTTAATTTATTAATCCTTATATAATTCTAGAAGATAGACACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATGTTAATTTATTAATCCTTATATAATTCTAGAAGATAGACACC  650

seq1  ACTATTACCTCTATTTTTTCTGAAGAATCTCCTTAGAGAGATTACCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTACCTCTATTTTTTCTGAAGAATCTCCTTAGAGAGATTACCTGGG  700

seq1  A-TTATAGAGTTAATAAATTACAAAACT-AAAATATACTGGTTAAACACC  748
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTTATAGAGTTAATAAATTACAAAACTAAAAATATACTGGTTAAACACC  750

seq1  CTTGTCAAGGTTTATTACAACTTATTTTAACTATTAAAAAAATGACTGCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAAGGTTTATTACAACTTATTTTAACTATTAAAAAAATGACTGCC  800

seq1  AATCAAATGGCATGTCCACGTGGTTTCAGTGTCCATA-GATTTCTATTTT  847
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATCAAATGGCATGTCCACGTGGTTTCAGTGTCCATAGGATTTCTATTTT  850

seq1  ATCT-GGCTC-AAAGACAGGTGAGCTTACACAACATGTGTAAGATCCAAA  895
      |||| ||||| |||||||||||||||||||| ||||||||||||||||||
seq2  ATCTGGGCTCAAAAGACAGGTGAGCTTACAC-ACATGTGTAAGATCCAAA  899

seq1  TGCTGAAAATTAGAAA-ATGCTGATAAAAACAAAACCAAAGAAAACTTAG  944
      |||||||||||||||| |||||||||||||| ||||| ||||||||||||
seq2  TGCTGAAAATTAGAAATATGCTGATAAAAAC-AAACCTAAGAAAACTTAG  948

seq1  TAAACACATTGTTCATTCACTGAAAACCTAAACATTGTAAAGATATCAAT  994
      |||||||||||||||||| |||||||||||||||| |||| |||||| ||
seq2  TAAACACATTGTTCATTCCCTGAAAACCTAAACATGGTAAGGATATC-AT  997

seq1  CTGAAGTCAATGTTACCAGAATT-TCTATGAAAATGTAGATTGCTAATTT  1043
      |||||||| ||| | |||||||| |||  |||||||  || ||||| |||
seq2  CTGAAGTC-ATG-TCCCAGAATTCTCT-GGAAAATGGTGA-TGCTATTTT  1043

seq1  TAAAAATCCATCTGGAAAGGCAAAACTATATAGAACTGCTAA  1085
         |||||||||||| ||||| |||||||||||| |||||||
seq2  ---AAATCCATCTGGGAAGGC-AAACTATATAGACCTGCTAA  1081

seq1: chr2_51769873_51770688
seq2: B6Ng01-004E12.g_69_883 (reverse)

seq1  TGAAACACTTCTCCAGACCTCATCTTTATTTCTCACAGAATTTTTCAGAA  50
      |||||||||| | ||||||||||||||||||||||||||||||||||| |
seq2  TGAAACACTT-TTCAGACCTCATCTTTATTTCTCACAGAATTTTTCAG-A  48

seq1  ACTCACAAAAGTACAACAAATGCTTCAATGAACGCCTGTTCCAACAACTA  100
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  ACTCACAAAAGTACAAC-AATGGTTCAATGAACGCCTGTTCCAACAACTA  97

seq1  TCAAGCTAATATCCGTCTAATGTCTTCTATTATCCACTACTCAGAG-AGA  149
      ||||||||| |||||| |||||||||||| |||||||||||||||| |||
seq2  TCAAGCTAA-ATCCGT-TAATGTCTTCTA-TATCCACTACTCAGAGAAGA  144

seq1  GACAGAG-AGAGACAGAAAGAGAGTCAGGGATATGAGCACACCTTATCAC  198
      ||||||| | |||||| |||||||||||||||||||||||||||||||||
seq2  GACAGAGAAAAGACAG-AAGAGAGTCAGGGATATGAGCACACCTTATCAC  193

seq1  TTTATCGTAGA-TACTAGAC-AACTATCT-ATAACTAAGCTGCATCCCAC  245
      ||||||||||| |||||||| || ||||| | ||||||||||||||||||
seq2  TTTATCGTAGATTACTAGACAAAATATCTAAAAACTAAGCTGCATCCCAC  243

seq1  CTTTGTAG-AATATTTTTAAAGATTTATTTATTATATGTAAGTACACTGT  294
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGAAATATTTTTAAAGATTTATTTATTATATGTAAGTACACTGT  293

seq1  GGCTGTCCTCAGACACACCAGAAGAGGGCGCCAGATCTCATTACGGATGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCTCAGACACACCAGAAGAGGGCGCCAGATCTCATTACGGATGG  343

seq1  TCGAGAGCCACCACGTGGTTGCTGGGATTACTCAGGACCTTCGGAAGAGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGAGCCACCACGTGGTTGCTGGGATTACTCAGGACCTTCGGAAGAGC  393

seq1  AGTCAGTGCTCTAACTGCTGAGCCATCTCTCCAACCCCTTTGTAGAATAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTGCTCTAACTGCTGAGCCATCTCTCCAACCCCTTTGTAGAATAT  443

seq1  TTTATAATGAGTTTTGGCATCAAGTGATTCCATGAAAACATTAATAGTTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATGAGTTTTGGCATCAAGTGATTCCATGAAAACATTAATAGTTA  493

seq1  AGGAATTTTTAGCATTGCCAAGATACCATTACCACACCTAATAAAACAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTTTAGCATTGCCAAGATACCATTACCACACCTAATAAAACAAA  543

seq1  TAATAATTCCATAATATAACTTTTATTCCTGATCGAATTTCCCTGGTTGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTCCATAATATAACTTTTATTCCTGATCGAATTTCCCTGGTTGT  593

seq1  CTCACAAAGATCACTTTAAGAATGATGTTTGCTCTATGACTCAAGTAAGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAAGATCACTTTAAGAATGATGTTTGCTCTATGACTCAAGTAAGG  643

seq1  TCCATAGATTGTCTTAGGTAATAGGTCTCTCAAGTCCGTTTTAATGTGCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGATTGTCTTAGGTAATAGGTCTCTCAAGTCCGTTTTAATGTGCA  693

seq1  ATCGTAACTTTACTCTCTAAAGTCTGTGATTGTTGCATTTCTAATGCATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTAACTTTACTCTCTAAAGTCTGTGATTGTTGCATTTCTAATGCATG  743

seq1  TGTAATCTTGCCAATGGACTCAGGCTGATCCCTGAAGTCACAGGTTGACA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCTTGCCAATGGACTCAGGCTGATCCCTGAAGTCACAGGTTGACA  793

seq1  GGCTCTGCAGGACAAAGAATTC  816
      ||||||||||||||||||||||
seq2  GGCTCTGCAGGACAAAGAATTC  815