BAC Information

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BAC

Clone NameB6Ng01-004F06
Chromosome2 (Build37)
Map Location 177,978,166 - 178,127,291
singlet/doubletdoublet
Overlap genePhactr3, Sycp2
Upstream geneLOC100043403, LOC100039198, LOC100043406, LOC668066, LOC621442, LOC628308, OTTMUSG00000016571, LOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik
Downstream genePpp1r3d, 9030418K01Rik, Cdh26, LOC100039368, LOC665264, LOC100043168, LOC100039413
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004F06.bB6Ng01-004F06.g
ACCDH841771DH841772
length1,198488
definitionDH841771|Mus musculus domesticus DNA, BAC clone: B6Ng01-004F06, 5' end.DH841772|Mus musculus domesticus DNA, BAC clone: B6Ng01-004F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,126,052 - 178,127,291)(177,978,166 - 177,978,659)
sequence
gaattccatctaatttctgtgtaaaacacttaagtagcagtcccttgttc
taaattatctaaatgctagacatttcagctgtcttcatctacttatactt
tatctcttgaaagcattcagggaatgttctactaaaatcatgtgttgctg
atttctaaaattaaatttatttttttcctaaattgttttgtgttttaggg
tctatacatttccttgcttgtcagcatttcttggtaaatatgaggtaagt
tttaaattcatacaaacctcaactattggataatttttaaataaaagtta
aatgaattatggagtacataatgttttaaaatattaaagtgctagactta
gacgatgctatagctaactactcctgtccttactgtgacagcaggaaaag
atggactagctcatcttagcagagagggagaagagcaagacttctagttc
attaccttcctctcctcctcaaaggcattgctgctgctgatcatattcag
actactttcattctctgttaatacttaaaatggttttgatttctccatct
aatttctgcgtaaaacacttaagtagcagtcccttgttctaaattatcta
aatgctagacatttcagctgtcttcatctacttatactttatctcttgaa
agcattcagggaatgttctactaaaatcatgtgttgctgatttctagaat
ttaaaaaaaaaactctaatagttcagtcatgactataacctggtgataat
ttcccatgttttgtaagcatcatatatactagttttatatattatgttag
ctgcagataccatcagatgaaaaacttgaggaattctggatcgattttaa
tcttgggagccacactctgtcattctacattgctggagatgaagaagtaa
gctcttacccttttgtgtcactgtatacacacatgtgaaggacattcttt
aatttactttcagaatacatgtttgcatatctttttttagccattctttg
atagatttagcataacttttattttagtgtatagctatcatgctattaaa
tgaacttctttagttttttatgtaataaatagcactaactttaaactatt
acataacttcagaatgaaatatacagaatttaattggggtcactgacatg
aatcacagtaaagaacgactagactgctcagtggtcagtgcttagcct
atcctcacacacacatgtgcagagttgaggtataatgtggggtgctgaga
agtggagtggtggtttagagttgagttactatacaaggtgctggggtcca
tgtttaggacttgtgtggggtgctggagttaccatcagtgtttgcctcct
cccaggagaaggaagtattgttttgggttatggtgaatagcctgcttgta
agactgccaatctggggtctagtgctgatgaggaacttgaggaaatttgt
gaggtcatgggagagatgagaagattcccagggtttgaggacagggcagt
accatgcagtctcataggtagggggctgcagatgtggatatgtgcagaag
gcacagaaggtgggcattgacgagaccagtccagcttgaggaaggtagac
accactaatatcctgttctggtgtattgtcctcttgctgtctccatccct
tgtccccagactgcacacagacagagttggtctcatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_178126052_178127291
seq2: B6Ng01-004F06.b_47_1244 (reverse)

seq1  AGGCTAAGCACTGTACCACTGAGCAGTCTTCATGCTGTC-TCTTTTACTG  49
      ||||||||||||| |||||||||||||||       ||| |  |||||||
seq2  AGGCTAAGCACTG-ACCACTGAGCAGTCT------AGTCGTTCTTTACTG  43

seq1  TTGATTCATTTTGTTCATGTGACCCCCAAAATTTAAATCTTGTTAATATT  99
       ||||||||     ||| ||||||||    | ||||||  |||  |||||
seq2  -TGATTCAT----GTCA-GTGACCCC----AATTAAATTCTGT--ATATT  81

seq1  CATTTCTGAAAGGTTTATGTTAAAATTAGTATTAAAATTTAGTGCTAATT  149
         |||||||    ||||||    | |||  || ||| |||||||||  |
seq2  TCATTCTGAA---GTTATGT----AATAG--TTTAAAGTTAGTGCTA--T  120

seq1  TTATTAACATAAAAAAACTTAAAGAAGTTTCATTTTAATTAGCATGATAG  199
      ||||| ||||||||||   |||||||| |||||||  | |||||||||||
seq2  TTATT-ACATAAAAAA--CTAAAGAAG-TTCATTT--AATAGCATGATAG  164

seq1  CTTATACAACCTAAAAATAAAAGTTAATGCTAAAATCTATCAAAAGAATG  249
      | ||||||  || |||||||||||| ||||| ||||||||| ||||||||
seq2  C-TATACA--CT-AAAATAAAAGTT-ATGCT-AAATCTATC-AAAGAATG  207

seq1  GCTAAAAAAAGATATGCAAACATGTATTCTGAAAGTAAATTAAAGAATGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAAAAGATATGCAAACATGTATTCTGAAAGTAAATTAAAGAATGT  257

seq1  CCTTCACATGTGTGTATACAGTGACACAAAAGGGTAAGAGCTTACTTCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACATGTGTGTATACAGTGACACAAAAGGGTAAGAGCTTACTTCTT  307

seq1  CATCTCCAGCAATGTAGAATGACAGAGTGTGGCTCCCAAGATTAAAATCG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCAGCAATGTAGAATGACAGAGTGTGGCTCCCAAGATTAAAATCG  357

seq1  ATCCAGAATTCCTCAAGTTTTTCATCTGATGGTATCTGCAGCTAACATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAATTCCTCAAGTTTTTCATCTGATGGTATCTGCAGCTAACATAA  407

seq1  TATATAAAACTAGTATATATGATGCTTACAAAACATGGGAAATTATCACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAACTAGTATATATGATGCTTACAAAACATGGGAAATTATCACC  457

seq1  AGGTTATAGTCATGACTGAACTATTAGAGTTTTTTTTTTAAATTCTAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATAGTCATGACTGAACTATTAGAGTTTTTTTTTTAAATTCTAGAA  507

seq1  ATCAGCAACACATGATTTTAGTAGAACATTCCCTGAATGCTTTCAAGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAACACATGATTTTAGTAGAACATTCCCTGAATGCTTTCAAGAGA  557

seq1  TAAAGTATAAGTAGATGAAGACAGCTGAAATGTCTAGCATTTAGATAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATAAGTAGATGAAGACAGCTGAAATGTCTAGCATTTAGATAATT  607

seq1  TAGAACAAGGGACTGCTACTTAAGTGTTTTACGCAGAAATTAGATGGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAAGGGACTGCTACTTAAGTGTTTTACGCAGAAATTAGATGGAGA  657

seq1  AATCAAAACCATTTTAAGTATTAACAGAGAATGAAAGTAGTCTGAATATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAACCATTTTAAGTATTAACAGAGAATGAAAGTAGTCTGAATATG  707

seq1  ATCAGCAGCAGCAATGCCTTTGAGGAGGAGAGGAAGGTAATGAACTAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAGCAGCAATGCCTTTGAGGAGGAGAGGAAGGTAATGAACTAGAA  757

seq1  GTCTTGCTCTTCTCCCTCTCTGCTAAGATGAGCTAGTCCATCTTTTCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCTCTTCTCCCTCTCTGCTAAGATGAGCTAGTCCATCTTTTCCTG  807

seq1  CTGTCACAGTAAGGACAGGAGTAGTTAGCTATAGCATCGTCTAAGTCTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACAGTAAGGACAGGAGTAGTTAGCTATAGCATCGTCTAAGTCTAG  857

seq1  CACTTTAATATTTTAAAACATTATGTACTCCATAATTCATTTAACTTTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAATATTTTAAAACATTATGTACTCCATAATTCATTTAACTTTTA  907

seq1  TTTAAAAATTATCCAATAGTTGAGGTTTGTATGAATTTAAAACTTACCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATTATCCAATAGTTGAGGTTTGTATGAATTTAAAACTTACCTC  957

seq1  ATATTTACCAAGAAATGCTGACAAGCAAGGAAATGTATAGACCCTAAAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACCAAGAAATGCTGACAAGCAAGGAAATGTATAGACCCTAAAAC  1007

seq1  ACAAAACAATTTAGGAAAAAAATAAATTTAATTTTAGAAATCAGCAACAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAATTTAGGAAAAAAATAAATTTAATTTTAGAAATCAGCAACAC  1057

seq1  ATGATTTTAGTAGAACATTCCCTGAATGCTTTCAAGAGATAAAGTATAAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTAGTAGAACATTCCCTGAATGCTTTCAAGAGATAAAGTATAAG  1107

seq1  TAGATGAAGACAGCTGAAATGTCTAGCATTTAGATAATTTAGAACAAGGG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAAGACAGCTGAAATGTCTAGCATTTAGATAATTTAGAACAAGGG  1157

seq1  ACTGCTACTTAAGTGTTTTACACAGAAATTAGATGGAATTC  1240
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTACTTAAGTGTTTTACACAGAAATTAGATGGAATTC  1198

seq1: chr2_177978166_177978659
seq2: B6Ng01-004F06.g_67_560

seq1  GAATTCATCCTCACACACACATGTGCAGAGTTGAGGTATAATGTGGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTCACACACACATGTGCAGAGTTGAGGTATAATGTGGGGTG  50

seq1  CTGAGAAGTGGAGTGGTGGTTTAGAGTTGAGTTACTATACAAGGTGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGTGGAGTGGTGGTTTAGAGTTGAGTTACTATACAAGGTGCTGG  100

seq1  GGTCCATGTTTAGGACTTGTGTGGGGTGCTGGAGTTACCATCAGTGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATGTTTAGGACTTGTGTGGGGTGCTGGAGTTACCATCAGTGTTTG  150

seq1  CCTCCTCCCAGGAGAAGGAAGTATTGTTTTGGGTTATGGTGAATAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCCAGGAGAAGGAAGTATTGTTTTGGGTTATGGTGAATAGCCTG  200

seq1  CTTGTAAGACTGCCAATCTGGGGTCTAGTGCTGATGAGGAACTTGAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAGACTGCCAATCTGGGGTCTAGTGCTGATGAGGAACTTGAGGAA  250

seq1  ATTTGTGAGGTCATGGGAGAGATGAGAAGATTCCCAGGGTTTGAGGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGAGGTCATGGGAGAGATGAGAAGATTCCCAGGGTTTGAGGACAG  300

seq1  GGCAGTACCATGCAGTCTCATAGGTAGGGGGCTGCAGATGTGGATATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTACCATGCAGTCTCATAGGTAGGGGGCTGCAGATGTGGATATGTG  350

seq1  CAGAAGGCACAGAAGGTGGGCATTGACGAGACCAGTCCAGCTTGAGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGCACAGAAGGTGGGCATTGACGAGACCAGTCCAGCTTGAGGAAG  400

seq1  GTAGACACCACGAATATCCTGTTCTGGTGTATTGTCCTCTTGCTGTCTCC  450
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTAGACACCACTAATATCCTGTTCTGGTGTATTGTCCTCTTGCTGTCTCC  450

seq1  ATCCCTTGCCCCCAGACTGCACACAGACAGAGTTGGTCTCATCT  494
      |||||||| |||||||||||||||||||||||||||||||||||
seq2  ATCCCTTGTCCCCAGACTGCACACAGACAGAGTTGGTCTCATCT  494