BAC Information

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BAC

Clone NameB6Ng01-004H18
Chromosome2 (Build37)
Map Location 49,965,178 - 50,077,088
singlet/doubletdoublet
Overlap geneLypd6
Upstream geneMbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik
Downstream gene2010311D03Rik, LOC666781, LOC227885, Rnd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004H18.bB6Ng01-004H18.g
ACCDH841882DH841883
length1,092370
definitionDH841882|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H18, 5' end.DH841883|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,075,990 - 50,077,088)(49,965,178 - 49,965,553)
sequence
gaattcctctattcttcattcatattgtcttcctaggtccttcatttctg
ccctccatctgtctatcagctttcttgattcttctatttgtgtacctaag
ttttgtaaggaccaatgcctgacagagacgacctcaggggactattctgc
tccacaggactgtactctcaggtctgtgactagtctttacacaattgttg
aattatttgattaaataatacttggatcatttcggtagaacttttctaaa
aacaaaattttgtttctctcttcttcatggaagaaaacttaaagcttcac
agagagagtccaacttcatcaaaacatggattcaaacttaactttataga
acatttactttctatgaccgaagacagttgtgtctccttaactgaataaa
ctaatccagtaaatactgtattttcctatcttactttcattctatcttag
ttatcttatttactcatgctctaaaaggttgattttattttttgtttgtt
tattccgcacattaaaaaattcataagcagacaacaacagcatctccaag
ggtcccagaagcagcctccaagggggctcagtggtcacagaacatggctt
tcagactggctacgatgtgggtctcgggctgccttctgacagctacaagc
tttcgtccccactcaaaggttctgccgcatcagggaagagagaaaagaga
gaaggagaaagggagtctgaaatctcacagcttgtttctgtcagaacaca
tcagttccaggtcatgtctctacagcgtgaatgccatggagcaagctcag
cctgtcagcacagaggacagagaagctcactgacagttcccaggttggca
ctccgtacccattacagtaggagaatttgctgttccccttcactgagctg
cctgtcccttagctgagtcccccagatgcagggttcaaagccctggaaag
ggcggtgcctctgcttgtcacatacatgaacagaagagagctgctggggt
catagttgagtggagggtggaaagggacacacaggggaaaacagcccatc
tccagatgggtgctctggcatgctctatctcacgtcaggtct
tctaatatgtgcccctttgtgtacctgggtgtctatgtggggagtggggg
tgggcaggggggagacgactttgtagcctttgatatttggatggtgtcaa
gctacatggatttgtgtcctggagcttttggaggtagatggggagaaagt
tggatgagccatctgttttcttcttctaagggttaactggttagaatgat
accgaatgtttgttgctcactgtttgcacaccatgaaacgaaacgcagaa
aatatgtattcttcgacctcactccctgtgctgtgtgtgcagcaaaattt
atagatcatcttttccagctataatgaggctcctcttgtgtgctctgtgt
agtcctgcacttccttacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_50075990_50077088
seq2: B6Ng01-004H18.b_48_1139 (reverse)

seq1  AGACACTGACGTGGAAGGATAGAGCATGGCAGGAGGCACCATCTGGGAGA  50
      |||| ||||||||    ||||||||||| || |||   |||||| |||||
seq2  AGAC-CTGACGTG---AGATAGAGCATGCCA-GAGCACCCATCT-GGAGA  44

seq1  TGGGCTGTGTTTCCCCTGTGTGTCCCTTTCCACCCTCACTTCAACTATGA  100
      |||||||| ||||||||||||||||||||||||||||   ||||||||||
seq2  TGGGCTGT-TTTCCCCTGTGTGTCCCTTTCCACCCTCCACTCAACTATGA  93

seq1  CCCCAGCAGCTCTCTTCTGTTCATGTATGTGACAAGCAGAGGCACGGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCCCAGCAGCTCTCTTCTGTTCATGTATGTGACAAGCAGAGGCACCGCCC  143

seq1  CTTCCAGGGCTTTG-ACCCTGCATCTGGGGGGACTCAGCTAAGGGACAGG  199
       ||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  TTTCCAGGGCTTTGAACCCTGCATCT-GGGGGACTCAGCTAAGGGACAGG  192

seq1  CAGCTCAGTGAAGGGGAACAGCAAATTCTCCTACTGTAATGGGTACGGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGTGAAGGGGAACAGCAAATTCTCCTACTGTAATGGGTACGGAG  242

seq1  TGCCAACCTGGGAACTGTCAGTGAGCTTCTCTGTCCTCTGTGCTGACAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACCTGGGAACTGTCAGTGAGCTTCTCTGTCCTCTGTGCTGACAGG  292

seq1  CTGAGCTTGCTCCATGGCATTCACGCTGTAGAGACATGACCTGGAACTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTGCTCCATGGCATTCACGCTGTAGAGACATGACCTGGAACTGA  342

seq1  TGTGTTCTGACAGAAACAAGCTGTGAGATTTCAGACTCCCTTTCTCCTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTGACAGAAACAAGCTGTGAGATTTCAGACTCCCTTTCTCCTTC  392

seq1  TCTCTTTTCTCTCTTCCCTGATGCGGCAGAACCTTTGAGTGGGGACGAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTCTCTCTTCCCTGATGCGGCAGAACCTTTGAGTGGGGACGAAA  442

seq1  GCTTGTAGCTGTCAGAAGGCAGCCCGAGACCCACATCGTAGCCAGTCTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTAGCTGTCAGAAGGCAGCCCGAGACCCACATCGTAGCCAGTCTGA  492

seq1  AAGCCATGTTCTGTGACCACTGAGCCCCCTTGGAGGCTGCTTCTGGGACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGTTCTGTGACCACTGAGCCCCCTTGGAGGCTGCTTCTGGGACC  542

seq1  CTTGGAGATGCTGTTGTTGTCTGCTTATGAATTTTTTAATGTGCGGAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGATGCTGTTGTTGTCTGCTTATGAATTTTTTAATGTGCGGAATA  592

seq1  AACAAACAAAAAATAAAATCAACCTTTTAGAGCATGAGTAAATAAGATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAAAATAAAATCAACCTTTTAGAGCATGAGTAAATAAGATAA  642

seq1  CTAAGATAGAATGAAAGTAAGATAGGAAAATACAGTATTTACTGGATTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATAGAATGAAAGTAAGATAGGAAAATACAGTATTTACTGGATTAG  692

seq1  TTTATTCAGTTAAGGAGACACAACTGTCTTCGGTCATAGAAAGTAAATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAGTTAAGGAGACACAACTGTCTTCGGTCATAGAAAGTAAATGT  742

seq1  TCTATAAAGTTAAGTTTGAATCCATGTTTTGATGAAGTTGGACTCTCTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAAGTTAAGTTTGAATCCATGTTTTGATGAAGTTGGACTCTCTCT  792

seq1  GTGAAGCTTTAAGTTTTCTTCCATGAAGAAGAGAGAAACAAAATTTTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCTTTAAGTTTTCTTCCATGAAGAAGAGAGAAACAAAATTTTGTT  842

seq1  TTTAGAAAAGTTCTACCGAAATGATCCAAGTATTATTTAATCAAATAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAAGTTCTACCGAAATGATCCAAGTATTATTTAATCAAATAATT  892

seq1  CAACAATTGTGTAAAGACTAGTCACAGACCTGAGAGTACAGTCCTGTGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATTGTGTAAAGACTAGTCACAGACCTGAGAGTACAGTCCTGTGGA  942

seq1  GCAGAATAGTCCCCTGAGGTCGTCTCTGTCAGGCATTGGTCCTTACAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATAGTCCCCTGAGGTCGTCTCTGTCAGGCATTGGTCCTTACAAAA  992

seq1  CTTAGGTACACAAATAGAAGAATCAAGAAAGCTGATAGACAGATGGAGGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTACACAAATAGAAGAATCAAGAAAGCTGATAGACAGATGGAGGG  1042

seq1  CAGAAATGAAGGACCTAGGAAGACAATATGAATGAAGAATAGAGGAATTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGAAGGACCTAGGAAGACAATATGAATGAAGAATAGAGGAATTC  1092

seq1: chr2_49965178_49965553
seq2: B6Ng01-004H18.g_70_445

seq1  GAATTCTCTAATATGTGCCCCTTTGTGTACCTGGGTGTCTATGTGGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAATATGTGCCCCTTTGTGTACCTGGGTGTCTATGTGGGGAG  50

seq1  TGGGGGTGGGCAGGGGGGAGACGACTTTGTAGCCTTTGATATTTGGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTGGGCAGGGGGGAGACGACTTTGTAGCCTTTGATATTTGGATGG  100

seq1  TGTCAAGCTACATGGATTTGTGTCCTGGAGCTTTTGGAGGTAGATGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGCTACATGGATTTGTGTCCTGGAGCTTTTGGAGGTAGATGGGGA  150

seq1  GAAAGTTGGATGAGCCATCTGTTTTCTTCTTCTAAGGGTTAACTGGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTGGATGAGCCATCTGTTTTCTTCTTCTAAGGGTTAACTGGTTAG  200

seq1  AATGATACCGAATGTTTGTTGCTCACTGTTTGCACACCAGGAAACGAAAC  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATGATACCGAATGTTTGTTGCTCACTGTTTGCACACCATGAAACGAAAC  250

seq1  GCAGAAAATATGTATTCTTCGACCTCACTCCCTGTGCTGTGTGTGCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAATATGTATTCTTCGACCTCACTCCCTGTGCTGTGTGTGCAGCA  300

seq1  AAATTTAGAGAGCATCTTTTCCAGCTATAATGAGGCTCCTCTTGTGTGCT  350
      ||||||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATAGATCATCTTTTCCAGCTATAATGAGGCTCCTCTTGTGTGCT  350

seq1  CTGTGTAGTCCTGCACTTCCTTACCT  376
      ||||||||||||||||||||||||||
seq2  CTGTGTAGTCCTGCACTTCCTTACCT  376