BAC Information

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BAC

Clone NameB6Ng01-004J12
Chromosome2 (Build37)
Map Location 82,019,617 - 82,231,887
singlet/doubletdoublet
Overlap geneZfp804a, LOC100041308, A130030D18Rik
Upstream geneLOC100040704
Downstream geneEG624362, LOC433550, LOC269292, LOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004J12.bB6Ng01-004J12.g
ACCDH841958DH841959
length1,106646
definitionDH841958|Mus musculus domesticus DNA, BAC clone: B6Ng01-004J12, 5' end.DH841959|Mus musculus domesticus DNA, BAC clone: B6Ng01-004J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,230,762 - 82,231,887)(82,019,617 - 82,020,262)
sequence
gaattcaagccctgcacttagtaggactgagaactcccctttcccttgct
cttgattttataagaaatagattttgtgttttgctcacgcagtatgactt
tgggtgtgcacctattgtatatagatattattataatgagatagagtccc
tcaaaatctagtttattcaagacttttattgaagccatagctgtatattt
tattctgacatctgattgttctacaaatgttctgatggtaagcttttgac
ttttttcttctttctttttctaggttttaaccttcctattttggcaatga
ctaaacattcaaaagtgaactataacaattatgtgtatagtctgcgactt
tttttccagtgtttgtttctagccttatctcttcattatctaatatgtga
caaactaattattcaaaccaagtatttttggtccacttttataatattgg
tactcaagggcctgagataagaggataagtttggcaccagtctgctacag
tcagaccctgtttcaaaaatatcatttttaaaaatttaatttcagtttct
ttacataccgaaatatgacccatagagttggaaagttgaatgagatgctg
ggatgaatgtgcgtttctacaatttgaattcaaaacccctctgccatggc
cagagggctgagataataggtgagggccactgttccaaactcctctcaaa
accttgttaaaaagtaaacataaattatttttgttcacaaagggcatatt
catccatcttaaattttgttactgttgctgtacatctaatccaatcccaa
aatatatttccaacaccaggtgaagaaaataaaatgaatgaggttttatt
ttcagtgttagtgactgtctctgtgaactctttaagttggcataaacttt
gcttaaatttttcattaatttcaattgttaatttaaattatttattttat
attccagtcattgcccattctatctatatcccacagttctcatcccatct
tctgagaggtggcccccacccatcagctcccctttcctgtgcctcagtct
ctcagagtacgtgctattttccactgagcgaacagcaaatacagctatgt
atgtgc
gaattcatatcatgaaaccaagtttaagagccaaacagtcccagtgaatc
tgataaaatcatcaacttcctgaagctatttcgatctgttttctccctgt
attaaggaccttctctgaaggacagggtgtttagccccactcagaactgt
ctgttctaaaacacccatggaaggagttacagagacaaagtttggagctg
agatgaaaggatggaccatgtagagactgccatacccggagatccacccc
ataatcagcatccaaacgctgacaccattgcatacactagcaagatttta
ttgaaaggacccagatgtagctgtctcttgtgagactatgctggggccta
gcaaacacagaagtggatgctcacagtcagctaatggatggatcataggg
ctcccaatggaggagctagagaaagtagccaaggagctaaagggatctgc
aaccctataggtggaacaacattatgaactaaccagtaccccggagctct
tgactctagctgcatatatatcaaaagatggcctagtcggccatcactgg
aaagagaggcccattggacttgcaaactttatatgccccagtacagggga
acaccagggccaaaaagggggagtgggtgggcaggggagtgggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_82230762_82231887
seq2: B6Ng01-004J12.b_45_1150 (reverse)

seq1  GCACATACATAGCTGATATTTGCCTGGTCTGGCCTCAGTGGGAGAATAGG  50
      ||||||||||||||| |||||| ||| ||    |||||| ||| |||| |
seq2  GCACATACATAGCTG-TATTTG-CTGTTC---GCTCAGT-GGAAAATA-G  43

seq1  CACCGTACTCTTGAGAGACTGGAAGCCACAGGGAAAGGGGAGGCCTGATG  100
      || ||||||| ||||||||||  || |||| |||||||||||  ||||| 
seq2  CA-CGTACTC-TGAGAGACTG--AGGCACA-GGAAAGGGGAG--CTGAT-  85

seq1  GGGTGGGGGCCACCCTCTCAGAAGAATGGGATGAGGAACTGTGGGATATA  150
      |||||||||||| ||||||||||| ||||||||| |||||||||||||||
seq2  GGGTGGGGGCCA-CCTCTCAGAAG-ATGGGATGA-GAACTGTGGGATATA  132

seq1  GGATAGAATGGGGCAATGACTGGAATATAAAATAAAATAATTTAAATTAA  200
       |||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  -GATAGAAT-GGGCAATGACTGGAATATAAAAT-AAATAATTTAAATTAA  179

seq1  CAATTGAAATTAATGAAAAATTTAAGC-AAGTTTATGCCAACTTAAAGAG  249
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAATTGAAATTAATGAAAAATTTAAGCAAAGTTTATGCCAACTTAAAGAG  229

seq1  TTCACAGAGACAGTCACTAACACTGAAAATAAAACCTCATTCATTTTATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAGACAGTCACTAACACTGAAAATAAAACCTCATTCATTTTATT  279

seq1  TTCTTCACCTGGTGTTGGAAATATATTTTGGGATTGGATTAGATGTACAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACCTGGTGTTGGAAATATATTTTGGGATTGGATTAGATGTACAG  329

seq1  CAACAGTAACAAAATTTAAGATGGATGAATATGCCCTTTGTGAACAAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTAACAAAATTTAAGATGGATGAATATGCCCTTTGTGAACAAAAA  379

seq1  TAATTTATGTTTACTTTTTAACAAGGTTTTGAGAGGAGTTTGGAACAGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATGTTTACTTTTTAACAAGGTTTTGAGAGGAGTTTGGAACAGTG  429

seq1  GCCCTCACCTATTATCTCAGCCCTCTGGCCATGGCAGAGGGGTTTTGAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCACCTATTATCTCAGCCCTCTGGCCATGGCAGAGGGGTTTTGAAT  479

seq1  TCAAATTGTAGAAACGCACATTCATCCCAGCATCTCATTCAACTTTCCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTGTAGAAACGCACATTCATCCCAGCATCTCATTCAACTTTCCAA  529

seq1  CTCTATGGGTCATATTTCGGTATGTAAAGAAACTGAAATTAAATTTTTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGGGTCATATTTCGGTATGTAAAGAAACTGAAATTAAATTTTTAA  579

seq1  AAATGATATTTTTGAAACAGGGTCTGACTGTAGCAGACTGGTGCCAAACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATATTTTTGAAACAGGGTCTGACTGTAGCAGACTGGTGCCAAACT  629

seq1  TATCCTCTTATCTCAGGCCCTTGAGTACCAATATTATAAAAGTGGACCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCTTATCTCAGGCCCTTGAGTACCAATATTATAAAAGTGGACCAA  679

seq1  AAATACTTGGTTTGAATAATTAGTTTGTCACATATTAGATAATGAAGAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTGGTTTGAATAATTAGTTTGTCACATATTAGATAATGAAGAGA  729

seq1  TAAGGCTAGAAACAAACACTGGAAAAAAAGTCGCAGACTATACACATAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTAGAAACAAACACTGGAAAAAAAGTCGCAGACTATACACATAAT  779

seq1  TGTTATAGTTCACTTTTGAATGTTTAGTCATTGCCAAAATAGGAAGGTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAGTTCACTTTTGAATGTTTAGTCATTGCCAAAATAGGAAGGTTA  829

seq1  AAACCTAGAAAAAGAAAGAAGAAAAAAGTCAAAAGCTTACCATCAGAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAGAAAAAGAAAGAAGAAAAAAGTCAAAAGCTTACCATCAGAACA  879

seq1  TTTGTAGAACAATCAGATGTCAGAATAAAATATACAGCTATGGCTTCAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGAACAATCAGATGTCAGAATAAAATATACAGCTATGGCTTCAAT  929

seq1  AAAAGTCTTGAATAAACTAGATTTTGAGGGACTCTATCTCATTATAATAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTTGAATAAACTAGATTTTGAGGGACTCTATCTCATTATAATAA  979

seq1  TATCTATATACAATAGGTGCACACCCAAAGTCATACTGCGTGAGCAAAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATATACAATAGGTGCACACCCAAAGTCATACTGCGTGAGCAAAAC  1029

seq1  ACAAAATCTATTTCTTATAAAATCAAGAGCAAGGGAAAGGGGAGTTCTCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCTATTTCTTATAAAATCAAGAGCAAGGGAAAGGGGAGTTCTCA  1079

seq1  GTCCTACTAAGTGCAGGGCTTGAATTC  1126
      |||||||||||||||||||||||||||
seq2  GTCCTACTAAGTGCAGGGCTTGAATTC  1106

seq1: chr2_82019617_82020262
seq2: B6Ng01-004J12.g_67_712

seq1  GAATTCATATCATGAAACCAAGTTTAAGAGCCAAACAGTCCCAGTGAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCATGAAACCAAGTTTAAGAGCCAAACAGTCCCAGTGAATC  50

seq1  TGATAAAATCATCAACTTCCTGAAGCTATTTCGATCTGTTTTCTCCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAATCATCAACTTCCTGAAGCTATTTCGATCTGTTTTCTCCCTGT  100

seq1  ATTAAGGACCTTCTCTGAAGGACAGGGTGTTTAGCCCCACTCAGAACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGACCTTCTCTGAAGGACAGGGTGTTTAGCCCCACTCAGAACTGT  150

seq1  CTGTTCTAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTG  200

seq1  AGATGAAAGGATGGACCATGTAGAGACTGCCATACCCGGAGATCCACCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAGGATGGACCATGTAGAGACTGCCATACCCGGAGATCCACCCC  250

seq1  ATAATCAGCATCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAGCATCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTA  300

seq1  TTGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCTGGGGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCTGGGGCCTA  350

seq1  GCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCATAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCATAGGG  400

seq1  CTCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGC  450

seq1  AACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCT  500

seq1  TGACTCTAGCTGCATATATATCAAAAGATGGCCTAGTCGGCCATCACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTAGCTGCATATATATCAAAAGATGGCCTAGTCGGCCATCACTGG  550

seq1  AAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGA  600

seq1  ACACCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGGT  646