BAC Information

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BAC

Clone NameB6Ng01-004L24
Chromosome2 (Build37)
Map Location 100,563,088 - 100,659,126
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668702, LOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004L24.bB6Ng01-004L24.g
ACCDH842078DH842079
length1,1251,130
definitionDH842078|Mus musculus domesticus DNA, BAC clone: B6Ng01-004L24, 5' end.DH842079|Mus musculus domesticus DNA, BAC clone: B6Ng01-004L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,658,599 - 100,659,126)(100,563,088 - 100,564,226)
sequence
gaattcttagttatgggatacagatcctacctacagcatttatcagagct
gatcatatccacctcttggcacactgttgggaaaccctgctacttaaggt
aggaatttaccatgaccaggcagctcctctgagcttggcacacaatggag
gactccctttaccagtagggatttctcctttctgaacttctctggagaac
ctgatttccatatcttctgcctgaggaagctcatgtagctcttagcaaac
atacaagttcaactttctcttccccccaccccccataagaatctgcctag
aaagtacctgggattcctggaatacctcactatacagatgaggcatttgt
ggtactttgaactctagccagtgattttacatctaccctgaaaacgcctt
cccactttccaaagttcatttacagctctggttcatcctgaataatgggt
atgcatacaagcctacctgaataaaagtttacacacaagctaagactgtc
taagagaacggtttcaataaaaacctcagagaagctcttctccacctcag
cattcaatctcagccagaccaggatcctgcagaccacacccattctggac
tctgtttcattctgccagcctggtgagctgagaagtctggacatcttgcc
tgagaggaaggaaatggaggatgtggaaccgtaggaggaatcccaacaaa
cataaaacaacacaccttcttcaaagaggtgcaaatctattctcattccc
tgttattcctaactattcaggatctagtttccattactaaatgtttatca
gattttacgctcttgatactgtcctgtatcatactgtgttatagttctca
gtagcatctggttacttaccgaaatcaggattttcatctgaacttttaaa
ttgaattgtagacttgagcagtaattaagcttcctgtcattagctcgttt
atatgatttactgctatatttaatatagaagtgcagaataacacagagct
attgatgtcttgatagtagaacatacgaaaaaagatgctcttctttactg
atgcttccagtgttccatagtaaatgcattgaagatgttcaggggccttt
acagcacagatcagggtgtccagtt
gaattccaagctcagggtctgcttcaagaattttctaggaatccttggaa
cacttataataaaacaatactgaaacagagcacatggatccaaacaccaa
acaggttttgagtattcgggctatgggaatgtcaaggttccaggaggctg
tttctatgcaactctgcctcctgtctgcttccaggctattaggcctacca
agcagactgcactggagtggatgtagcataatgagttgaactgcatgtcc
tcatcgaatagatcaaagtacaatgatgactttgaaacattaactgtttc
atagacatgctttgtttgggaaaaagatgtaggagctagccagaaatagg
aacacctgtttttctgcgttctcttttcaactcttttgagttggaatctt
gaaataagtcacagtaattaagttcacgggagctggtgaacattgggcaa
aaaattcacaggtgtggcaaacctctgagccaacctcttccagggatgag
gtaccagcaggaacacctgggtgtgcatagaagccaattgtctgccaaaa
tcagggctatgaaatgagaggaagaaggggtagcatggcaaaccataggc
acttctgaaaactgaaagggggaaatcaagaaagaagaatccaactctgg
agctacaggttggagcaaatgtgcttaaaaggtacaagcttattattatt
ttcttttttacagattcatgcatgtgtatttatttatatatttccattca
aaacagctggcctagcttacatacattctcataatcacattgttacacac
acacacacattcatacttacatgtacatttggagcaaatgtccaagcatc
agtgcagaaagaacccactcatttctggatgaaaaatgaactacaatctt
attgtgtagagaaagaaaaagcttctactcttttatgctaatgaattaaa
cccaagaagaaagctttgctgtctatagtaagtctaagcctgcttctatt
aagaaaaacctgttatgttccattagtaaggaggatatgcctcataagac
ttccattcgattttggatttggataatgggtaacttgggtgaacttttac
ttgttgggtcaggattcggaagatgtataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_100658599_100659126
seq2: B6Ng01-004L24.b_678_1172 (reverse)

seq1  AACTGTGACACCCCTGATCTGTGCTGTAAAAGAGCTCCTGGGAAACATCT  50
      ||||| |||| |||||||||||||||||||   || ||||   |||||||
seq2  AACTG-GACA-CCCTGATCTGTGCTGTAAA--GGCCCCTG---AACATCT  43

seq1  TCAAATGCAATTTACTATGGGAACCACTGGGAAAGCCAATTCAGTAAAGG  100
      || ||||| |||||||||||  | ||||||  ||||    |||||||| |
seq2  TC-AATGC-ATTTACTATGG--AACACTGG--AAGC---ATCAGTAAA-G  83

seq1  AGGAGCATTCTTTTTTTCGTATGTTTCCTTACTATCAAGACATTCAAATA  150
      | ||||||   ||||||||||||||    ||||||||||||||   ||||
seq2  AAGAGCAT--CTTTTTTCGTATGTT---CTACTATCAAGACAT--CAATA  126

seq1  GGCTCTGTGTTTATTCCTGCCAACTTCTATTATTAAATATAAGCAGTAAA  200
       |||||||| ||||| ||||  ||||||| |||||||||| |||||||||
seq2  -GCTCTGTG-TTATT-CTGC--ACTTCTA-TATTAAATAT-AGCAGTAAA  169

seq1  TCAATAATAAACGAGCTAATGACAGGAAGCTTAATTACTGCTCAAGTCTA  250
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA--TATAAACGAGCTAATGACAGGAAGCTTAATTACTGCTCAAGTCTA  217

seq1  CAATTCAATTTAAAAGTTCAGATGAAAATCCTGATTTCGGTAAGTAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAATTTAAAAGTTCAGATGAAAATCCTGATTTCGGTAAGTAACCA  267

seq1  GATGCTACTGAGAACTATAACACAGTATGATACAGGACAGTATCAAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTACTGAGAACTATAACACAGTATGATACAGGACAGTATCAAGAGC  317

seq1  GTAAAATCTGATAAACATTTAGTAATGGAAACTAGATCCTGAATAGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATCTGATAAACATTTAGTAATGGAAACTAGATCCTGAATAGTTAG  367

seq1  GAATAACAGGGAATGAGAATAGATTTGCACCTCTTTGAAGAAGGTGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACAGGGAATGAGAATAGATTTGCACCTCTTTGAAGAAGGTGTGTT  417

seq1  GTTTTATGTTTGTTGGGATTCCTCCTACGGTTCCACATCCTCCATTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGTTTGTTGGGATTCCTCCTACGGTTCCACATCCTCCATTTCCT  467

seq1  TCCTCTCAGGCAAGATGTCCAGACTTCT  528
      ||||||||||||||||||||||||||||
seq2  TCCTCTCAGGCAAGATGTCCAGACTTCT  495

seq1: chr2_100563088_100564226
seq2: B6Ng01-004L24.g_67_1196

seq1  GAATTCCAAGCTCAGGGTCTGCTTCAAGAATTTTCTAGGAATCCTTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCTCAGGGTCTGCTTCAAGAATTTTCTAGGAATCCTTGGAA  50

seq1  CACTTATAATAAAACAATACTGAAACAGAGCACATGGATCCAAACACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATAATAAAACAATACTGAAACAGAGCACATGGATCCAAACACCAA  100

seq1  ACAGGTTTTGAGTATTCGGGCTATGGGAATGTCAAGGTTCCAGGAGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTTTGAGTATTCGGGCTATGGGAATGTCAAGGTTCCAGGAGGCTG  150

seq1  TTTCTATGCAACTCTGCCTCCTGTCTGCTTCCAGGCTATTAGGCCTACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGCAACTCTGCCTCCTGTCTGCTTCCAGGCTATTAGGCCTACCA  200

seq1  AGCAGACTGCACTGGAGTGGATGTAGCATAATGAGTTGAACTGCATGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACTGCACTGGAGTGGATGTAGCATAATGAGTTGAACTGCATGTCC  250

seq1  TCATCGAATAGATCAAAGTACAATGATGACTTTGAAACATTAACTGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGAATAGATCAAAGTACAATGATGACTTTGAAACATTAACTGTTTC  300

seq1  ATAGACATGCTTTGTTTGGGAAAAAGATGTAGGAGCTAGCCAGAAATAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACATGCTTTGTTTGGGAAAAAGATGTAGGAGCTAGCCAGAAATAGG  350

seq1  AACACCTGTTTTTCTGCGTTCTCTTTTCAACTCTTTTGAGTTGGAATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTGTTTTTCTGCGTTCTCTTTTCAACTCTTTTGAGTTGGAATCTT  400

seq1  GAAATAAGTCACAGTAATTAAGTTCACGGGAGCTGGTGAACATTGGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGTCACAGTAATTAAGTTCACGGGAGCTGGTGAACATTGGGCAA  450

seq1  AAAATTCACAGGTGTGGCAAACCTCTGAGCCAACCTCTTCCAGGGATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCACAGGTGTGGCAAACCTCTGAGCCAACCTCTTCCAGGGATGAG  500

seq1  GTACCAGCAGGAACACCTGGGTGTGCATAGAAGCCAATTGTCTGCCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGCAGGAACACCTGGGTGTGCATAGAAGCCAATTGTCTGCCAAAA  550

seq1  TCAGGGCTATGAAATGAGAGGAAGAAGGGGTAGCATGGCAAACCATAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCTATGAAATGAGAGGAAGAAGGGGTAGCATGGCAAACCATAGGC  600

seq1  ACTTCTGAAAACTGAAAGGGGGAAATCAAGAAAGAAGAATCCAACTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGAAAACTGAAAGGGGGAAATCAAGAAAGAAGAATCCAACTCTGG  650

seq1  AGCTACAGGTTGGAGCAAATGTGCTTAAAAGGTACAAGCTTATTATTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAGGTTGGAGCAAATGTGCTTAAAAGGTACAAGCTTATTATTATT  700

seq1  TTCTTTTTTACAGATTCATGCATGTGTATTTATTTATATATTTCCATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTACAGATTCATGCATGTGTATTTATTTATATATTTCCATTCA  750

seq1  AAACAGCTGGCCTAGCTTACATACATTCTCATAATCACATTGTTACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTGGCCTAGCTTACATACATTCTCATAATCACATTGTTACACAC  800

seq1  ACACACACATTCATACTTACATGTACATTTGGAGCAAATGTCCAAGCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATTCATACTTACATGTACATTTGGAGCAAATGTCCAAGCATC  850

seq1  AGTGCAGAAAGAACCCACTCA-TTCTGGATGAAAAATGAACTACAATCTT  899
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  AGTGCAGAAAGAACCCACTCATTTCTGGATGAAAAATGAACTACAATC-T  899

seq1  TATTGTGTAGAGAAAGAAAAAGCTTCTACTCTTTTATTGCTAAATGAATT  949
      |||||||||||||||||||||||||||||||||||| |||| ||||||||
seq2  TATTGTGTAGAGAAAGAAAAAGCTTCTACTCTTTTA-TGCT-AATGAATT  947

seq1  AAACCCAAGAAGAAAGCTTTGCTGTCTATAGTAAGTCTAAGCCTGCCTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAACCCAAGAAGAAAGCTTTGCTGTCTATAGTAAGTCTAAGCCTG-CTTC  996

seq1  TTATTAAGAAAAAACCTGTTATGTCCCA-TAGTAAGGAGGGATATG-CTC  1047
       ||||||| ||||||||||||||| ||| ||||||||| ||||||| |||
seq2  -TATTAAG-AAAAACCTGTTATGTTCCATTAGTAAGGA-GGATATGCCTC  1043

seq1  AT-AGACTTCTATTTCGATTTTTGATTTGAATTTATGTGTAAACTTGTGG  1096
      || ||||||| | ||||||||| |||||| | | ||| || |||||| ||
seq2  ATAAGACTTCCA-TTCGATTTTGGATTTGGA-TAATGGGT-AACTTG-GG  1089

seq1  TGAACTTTTTACTATGT--GGTCATGTATCCTGAAAGATGTATAA  1139
      ||||| ||||||| |||  ||||| |  ||  | |||||||||||
seq2  TGAAC-TTTTACT-TGTTGGGTCAGGATTC--GGAAGATGTATAA  1130