BAC Information

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BAC

Clone NameB6Ng01-004M01
Chromosome2 (Build37)
Map Location 73,390,838 - 73,548,396
singlet/doubletdoublet
Overlap geneChrna1, Chn1
Upstream geneLOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1
Downstream geneAtf2, Atp5g3, LOC667729, LOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004M01.bB6Ng01-004M01.g
ACCDH842080DH842081
length1,122110
definitionDH842080|Mus musculus domesticus DNA, BAC clone: B6Ng01-004M01, 5' end.DH842081|Mus musculus domesticus DNA, BAC clone: B6Ng01-004M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,547,282 - 73,548,396)(73,390,838 - 73,390,947)
sequence
gaattctctttctttgattacaggtgtaatcctgactagtctaaatagga
aaatacagacaagtataaaaagaaagtaccttgataaacaaatgtgcaat
aatgctaaagaagcaagccatatagatacatactcctagatggatctcaa
gaaagtgtttatagttatgtactaaatgcaataaaacatatctatagact
cagtgggtatggacactttattttatattgcccccctttctagttttcta
tattgtgtagtatcagcccagaaaagaagtgatttgtgttattcagagac
atgtcaaaatttttatatactaccttctgaagatgttttcctaatgttat
tttattttttaatgtacattggtgttttgcctgcatgtatatctgtgtga
gggtgtcagatcacctggaagtggaattataagctgtcatattggtgttt
ggaattgaacccaggtcctctgaaagagcagctcttaaccactaagccat
ctctctagcacccttcctaacataattatttaaagcagtggatcactatg
aaggccagcttccttttgtgtaaaattataggcatgtgccaatgcatcag
tcccctctcaggctttacaaacatcttgtccatacaaacttgtagtttga
gttttccacttaatgttgataatgagcattataatatttttttttaaatt
gccttttggttttagttctacagttgggcaacaaactataccaaaaatta
ttccaaatgttgttttagtgtttaaggtcttaacttttctgattattgag
aatagaaatatagcactttgaagaaaagaataaaaatctatataaaagaa
tatagtccatctcactccccagataaaacttttgtttttcattgggataa
tatcagataacaatgtatatagcaaatatttctaaattacttaaaattcc
agccatgggccaagtggtggtggcacacacctttaatttcagcactcagg
aggcagaggcagagggtccctgtgatttcaaggcttatcttgatttacag
aacaaattccagacagccgagacatgatgatagatagaaagatagatgat
agatgtatgatgatgatagatg
aacctttgcaaagaattgtgttctctcttgaagaagaaaaaaaagagaag
ggaaaggagggagaggaggaggaggagaaaggaagagaagaaggaggagg
aggacgagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_73547282_73548396
seq2: B6Ng01-004M01.b_48_1168 (reverse)

seq1  ATCTATC---------TATCTATCTATCTATCTATCTATCTATC--TATG  39
      |||||||          ||||||| |||||||| ||||||||||   |||
seq2  ATCTATCATCATCATACATCTATC-ATCTATCTTTCTATCTATCATCATG  49

seq1  TCTTCTGGCTGTCCTGGAATTTGTTCTGTAAATCAGGAT-AGCCTTGAAA  88
      |||   |||||| |||||||||||||||||||||| ||| ||||||||||
seq2  TCT--CGGCTGT-CTGGAATTTGTTCTGTAAATCAAGATAAGCCTTGAAA  96

seq1  TCACAGGGACCCTCCTGCCTCTGCCTCCTGAGTGCTGAAATTAAAGGTGT  138
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCACAGGGACCCT-CTGCCTCTGCCTCCTGAGTGCTGAAATTAAAGGTGT  145

seq1  GTGCCACCACCACCTGGCCCATGGCTGGAATTTTAAGTAATTTAGAAATA  188
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTGCCACCACCACTTGGCCCATGGCTGGAATTTTAAGTAATTTAGAAATA  195

seq1  TTTGCTATATACATTGTTATCTGATATTATCCCAATGAAAAACAAAAGTT  238
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTGCTATATACATTGTTATCTGATATTATCCCAATGAAAAACAAAAG-T  244

seq1  TTTATCTGGGGAGTGAGATGGACTATATTCTTTTATATAGATTTTTATTC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGGGGAGTGAGATGGACTATATTCTTTTATATAGATTTTTATTC  294

seq1  TTTTCTTCAAAGTGCTATATTTCTATTCTCAATAATCAGAAAAGTTAAGA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCAAAGTGCTATATTTCTATTCTCAATAATCAGAAAAGTTAAGA  344

seq1  CCTTAAACACTAAAACAACATTTGGAATAATTTTTGGTATAGTTTGTTGC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAACACTAAAACAACATTTGGAATAATTTTTGGTATAGTTTGTTGC  394

seq1  CCAACTGTAGAACTAAAACCAAAAGGCAATTTAAAAAAAAATATTATAAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGTAGAACTAAAACCAAAAGGCAATTTAAAAAAAAATATTATAAT  444

seq1  GCTCATTATCAACATTAAGTGGAAAACTCAAACTACAAGTTTGTATGGAC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTATCAACATTAAGTGGAAAACTCAAACTACAAGTTTGTATGGAC  494

seq1  AAGATGTTTGTAAAGCCTGAGAGGGGACTGATGCATTGGCACATGCCTAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTTGTAAAGCCTGAGAGGGGACTGATGCATTGGCACATGCCTAT  544

seq1  AATTTTACACAAAAGGAAGCTGGCCTTCATAGTGATCCACTGCTTTAAAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACACAAAAGGAAGCTGGCCTTCATAGTGATCCACTGCTTTAAAT  594

seq1  AATTATGTTAGGAAGGGTGCTAGAGAGATGGCTTAGTGGTTAAGAGCTGC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTTAGGAAGGGTGCTAGAGAGATGGCTTAGTGGTTAAGAGCTGC  644

seq1  TCTTTCAGAGGACCTGGGTTCAATTCCAAACACCAATATGACAGCTTATA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGAGGACCTGGGTTCAATTCCAAACACCAATATGACAGCTTATA  694

seq1  ATTCCACTTCCAGGTGATCTGACACCCTCACACAGATATACATGCAGGCA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACTTCCAGGTGATCTGACACCCTCACACAGATATACATGCAGGCA  744

seq1  AAACACCAATGTACATTAAAAAATAAAATAACATTAGGAAAACATCTTCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCAATGTACATTAAAAAATAAAATAACATTAGGAAAACATCTTCA  794

seq1  GAAGGTAGTATATAAAAATTTTGACATGTCTCTGAATAACACAAATCACT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTAGTATATAAAAATTTTGACATGTCTCTGAATAACACAAATCACT  844

seq1  TCTTTTCTGGGCTGATACTACACAATATAGAAAACTAGAAAGGGGGGCAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTGGGCTGATACTACACAATATAGAAAACTAGAAAGGGGGGCAA  894

seq1  TATAAAATAAAGTGTCCATACCCACTGAGTCTATAGATATGTTTTATTGC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATAAAGTGTCCATACCCACTGAGTCTATAGATATGTTTTATTGC  944

seq1  ATTTAGTACATAACTATAAACACTTTCTTGAGATCCATCTAGGAGTATGT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTACATAACTATAAACACTTTCTTGAGATCCATCTAGGAGTATGT  994

seq1  ATCTATATGGCTTGCTTCTTTAGCATTATTGCACATTTGTTTATCAAGGT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATGGCTTGCTTCTTTAGCATTATTGCACATTTGTTTATCAAGGT  1044

seq1  ACTTTCTTTTTATACTTGTCTGTATTTTCCTATTTAGACTAGTCAGGATT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTTTTATACTTGTCTGTATTTTCCTATTTAGACTAGTCAGGATT  1094

seq1  ACACCTGTAATCAAAGAAAGAGAATTC  1115
      |||||||||||||||||||||||||||
seq2  ACACCTGTAATCAAAGAAAGAGAATTC  1121

seq1: chr2_73390838_73390947
seq2: B6Ng01-004M01.g_69_178

seq1  AACCTTTGCAAAGAATTGTGTTCTCTCTTGAAGAAGAAAAAAAAGAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTGCAAAGAATTGTGTTCTCTCTTGAAGAAGAAAAAAAAGAGAAG  50

seq1  GGAAAGGAGGGAGAGGAGGAGGAGGAGAAAGGAAGAGAAGAAGGAGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAGGGAGAGGAGGAGGAGGAGAAAGGAAGAGAAGAAGGAGGAGG  100

seq1  AGGAGGAGGA  110
      |||| |||||
seq2  AGGACGAGGA  110