BAC Information

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BAC

Clone NameB6Ng01-005H24
Chromosome2 (Build37)
Map Location 82,976,017 - 83,080,877
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
Downstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005H24.bB6Ng01-005H24.g
ACCDH842619DH842620
length1,1021,090
definitionDH842619|Mus musculus domesticus DNA, BAC clone: B6Ng01-005H24, 5' end.DH842620|Mus musculus domesticus DNA, BAC clone: B6Ng01-005H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,079,779 - 83,080,877)(82,976,017 - 82,977,130)
sequence
gaattccagtggttagcgaaattcccatagagatgcattgggtaaaggga
aaacccaggccttctatgaatgtcattataccctgtgtgatttctttaga
aacagggagggaaaaactttttcattattccaaaagtgaacatttaaatt
caatttctttccctaggtacgctgcttttcaaatgactgacatttatgaa
agtaccatcattttaattttgtatttattaacaaaagagtttcctcagga
aaatagctagactactccttatgtatatattacttcgaagtaatcttcat
acaatgagtggtcattaatggtgacttttctgagattgtggtctagacca
tttttttaaaatcctagtccttttatctatgttatgagactagcagacaa
aagtgaggtagccaagatatatcacctcatttgtttctccacatttataa
acctgtcactggataaaagggaatttaattggactgatacgatttcatgt
gcaccaagagttgtcagtttctaccccgtgttctatactttctagggctt
tgcaaattatcagctgggaatttgttccaataccaggatatatattgttg
ttaaaataaatggatctctgactttaaaatcatgtgatgttcggcctcac
ttttaactgtgcaccttccaaaaccttctatgtctgagagaagaggtgca
ttcaccttgttgcagtttcaaattgcagttcaaattgtcacagttgtgtg
gctgtgatgattcagatcaaatactggtcatagcttataaagtccctagt
taagttgtacatcacttatttactctttaatgtatgtggcttcagaagta
acattagtctatcttcattttggaagatacagagcttcttggtgtatcct
attgtacacacatagtacaaatttcagaatattttggtaagttgtgataa
gatcttggggtaggatattggaaagcagttgaaatcactctaaaaagttg
agtctgtataaaagaaaatatcctctgtggcaatcttttacctacttcat
ttactcaaagaataaacggagataaaagtaataactaagagcatgatagt
tt
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
tcaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttaa
ctgactacaaacactaccataatgcaggtatcagggggaaaaagctgtat
ttcaattctaagcatatggagaaatatactatgtttgtatatattaatat
cagctagtctaaaatatgatgtattaaatatctccacactaaaatagctc
aaagtaaaggtagctttaattacttctcagctctagcttgctaattacat
attattatggagacttggaaaatattaccctaccaccatcaccaccacat
cataaaatcatacatacttcctacacacatacatatatacactactcccc
aacacacacacacacatgcatatatagcaaaacatattgttacagaaaaa
aagctataattttatttcaaggcttaggggaaattatggatgaattaaaa
cctaggaaagaaagccaacaatttttattgactatatctcttaactcttt
taattttctgtgatgaggcctatacaatgattctgaaaattaatcttctg
atgtatgtagcttttccagaggttttaaaattattacataaaaaatactc
taaatcaatgtcatactaatttaaatatacaaatgtcataagatgagttt
agcaaaagtaaatataacacatgagcttctgatcaaatctcagattttgt
gagatacttgactgaacatacatgcagatagttcacacatctgaaaaatt
atttagaatccagtaaatatcaggatcaattgtgagtatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_83079779_83080877
seq2: B6Ng01-005H24.b_44_1145 (reverse)

seq1  AAACTATCACTGCTCTTAGTTATTTACTTTTATCTCTGTTTATCTCTTTG  50
      ||||||||| |||||||||||| ||||||||||||| |||||| ||||||
seq2  AAACTATCA-TGCTCTTAGTTA-TTACTTTTATCTCCGTTTAT-TCTTTG  47

seq1  AGTAAATGAAGTAGGT-AAAGATTGCCACAGAGGATATTTCTTTTTATAC  99
      |||||||||||||||| |||||||||||||||||||||||  ||||||||
seq2  AGTAAATGAAGTAGGTAAAAGATTGCCACAGAGGATATTTTCTTTTATAC  97

seq1  AGACTC-ACTTTTTAGAGTGATTTCAACTGCTTTTCAATAATCCTA-CCC  147
      |||||| ||||||||||||||||||||||||||| |||| |||||| |||
seq2  AGACTCAACTTTTTAGAGTGATTTCAACTGCTTTCCAAT-ATCCTACCCC  146

seq1  AAGATC-TATCAC-ACCTACCAAAATA-TCTGAAATTTGTACTATGTGTG  194
      |||||| |||||| || |||||||||| ||||||||||||||||||||||
seq2  AAGATCTTATCACAACTTACCAAAATATTCTGAAATTTGTACTATGTGTG  196

seq1  TACAATAGGATACACC-AGAAGCTCTGTATCTTCCAAAATGAAGATAGAC  243
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TACAATAGGATACACCAAGAAGCTCTGTATCTTCCAAAATGAAGATAGAC  246

seq1  TAATGTTACTTCTGAAGCCACATACATTAAAGAGTAAATAAGTGATGTAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTACTTCTGAAGCCACATACATTAAAGAGTAAATAAGTGATGTAC  296

seq1  AACTTAACTAGGGACTTTATAAGCTATGACCAGTATTTGATCTGAATCAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAACTAGGGACTTTATAAGCTATGACCAGTATTTGATCTGAATCAT  346

seq1  CACAGCCACACAACTGTGACAATTTGAACTGCAATTTGAAACTGCAACAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCACACAACTGTGACAATTTGAACTGCAATTTGAAACTGCAACAA  396

seq1  GGTGAATGCACCTCTTCTCTCAGACATAGAAGGTTTTGGAAGGTGCACAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATGCACCTCTTCTCTCAGACATAGAAGGTTTTGGAAGGTGCACAG  446

seq1  TTAAAAGTGAGGCCGAACATCACATGATTTTAAAGTCAGAGATCCATTTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTGAGGCCGAACATCACATGATTTTAAAGTCAGAGATCCATTTA  496

seq1  TTTTAACAACAATATATATCCTGGTATTGGAACAAATTCCCAGCTGATAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACAACAATATATATCCTGGTATTGGAACAAATTCCCAGCTGATAA  546

seq1  TTTGCAAAGCCCTAGAAAGTATAGAACACGGGGTAGAAACTGACAACTCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAAGCCCTAGAAAGTATAGAACACGGGGTAGAAACTGACAACTCT  596

seq1  TGGTGCACATGAAATCGTATCAGTCCAATTAAATTCCCTTTTATCCAGTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCACATGAAATCGTATCAGTCCAATTAAATTCCCTTTTATCCAGTG  646

seq1  ACAGGTTTATAAATGTGGAGAAACAAATGAGGTGATATATCTTGGCTACC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTTATAAATGTGGAGAAACAAATGAGGTGATATATCTTGGCTACC  696

seq1  TCACTTTTGTCTGCTAGTCTCATAACATAGATAAAAGGACTAGGATTTTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTGTCTGCTAGTCTCATAACATAGATAAAAGGACTAGGATTTTA  746

seq1  AAAAAATGGTCTAGACCACAATCTCAGAAAAGTCACCATTAATGACCACT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGGTCTAGACCACAATCTCAGAAAAGTCACCATTAATGACCACT  796

seq1  CATTGTATGAAGATTACTTCGAAGTAATATATACATAAGGAGTAGTCTAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTATGAAGATTACTTCGAAGTAATATATACATAAGGAGTAGTCTAG  846

seq1  CTATTTTCCTGAGGAAACTCTTTTGTTAATAAATACAAAATTAAAATGAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCCTGAGGAAACTCTTTTGTTAATAAATACAAAATTAAAATGAT  896

seq1  GGTACTTTCATAAATGTCAGTCATTTGAAAAGCAGCGTACCTAGGGAAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTTTCATAAATGTCAGTCATTTGAAAAGCAGCGTACCTAGGGAAAG  946

seq1  AAATTGAATTTAAATGTTCACTTTTGGAATAATGAAAAAGTTTTTCCCTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAATTTAAATGTTCACTTTTGGAATAATGAAAAAGTTTTTCCCTC  996

seq1  CCTGTTTCTAAAGAAATCACACAGGGTATAATGACATTCATAGAAGGCCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCTAAAGAAATCACACAGGGTATAATGACATTCATAGAAGGCCT  1046

seq1  GGGTTTTCCCTTTACCCAATGCATCTCTATGGGAATTTCGCTAACCACTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTCCCTTTACCCAATGCATCTCTATGGGAATTTCGCTAACCACTG  1096

seq1  GAATTC  1099
      ||||||
seq2  GAATTC  1102

seq1: chr2_82976017_82977130
seq2: B6Ng01-005H24.g_67_1156

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  CTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA  200

seq1  TCAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250

seq1  CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC  300

seq1  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTAA  350

seq1  CTGACTACAAACACTACCATAATGCAGGTATCAGGGGGAAAAAGCTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTACAAACACTACCATAATGCAGGTATCAGGGGGAAAAAGCTGTAT  400

seq1  TTCAATTCTAAGCATATGGAGAAATATACTATGTTTGTATATATTAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCTAAGCATATGGAGAAATATACTATGTTTGTATATATTAATAT  450

seq1  CAGCTAGTCTAAAATATGATGTATTAAATATCTCCACACTAAAATAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGTCTAAAATATGATGTATTAAATATCTCCACACTAAAATAGCTC  500

seq1  AAAGTAAAGGTAGCTTTAATTACTTCTCAGCTCTAGCTTGCTAATTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAGGTAGCTTTAATTACTTCTCAGCTCTAGCTTGCTAATTACAT  550

seq1  ATTATTATGGAGACTTGGAAAATATTACCCTACCACCATCACCACCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATGGAGACTTGGAAAATATTACCCTACCACCATCACCACCACAT  600

seq1  CATAAAATCATACATACTTCCTACACACATACATATATACACTACTCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATCATACATACTTCCTACACACATACATATATACACTACTCCCC  650

seq1  AACACACACACACACATGCATATATAGCAAAACATATTGTTACAGAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACACACACATGCATATATAGCAAAACATATTGTTACAGAAAAA  700

seq1  AAGCTATAATTTTATTTCAAGGCTTAGGGGAAATTATGGATGAATTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATAATTTTATTTCAAGGCTTAGGGGAAATTATGGATGAATTAAAA  750

seq1  CCTAGGAAAAGAAAGCCAACAATTTTTATTGACTATATCTCTTAACTCTT  800
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGG-AAAGAAAGCCAACAATTTTTATTGACTATATCTCTTAACTCTT  799

seq1  TTAATTTTCTGTGATGAGGCCTATACAATGATTCTGAAAATTAATCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTCTGTGATGAGGCCTATACAATGATTCTGAAAATTAATCTTCT  849

seq1  GATGTATGTAGCTTTTCCAGAAGGTTTTAAAA-TAATACATAAAAAATAC  899
      |||||||||||||||||||| ||||||||||| || ||||||||||||||
seq2  GATGTATGTAGCTTTTCCAG-AGGTTTTAAAATTATTACATAAAAAATAC  898

seq1  TCTAAATCAATGTTCATACTAA-TTAAATATACAAATGTCATAAAGATGA  948
      |||||||||||| ||||||||| ||||||||||||||||||| |||||||
seq2  TCTAAATCAATG-TCATACTAATTTAAATATACAAATGTCAT-AAGATGA  946

seq1  GTTTTAGCAAAAGTAAATTATAAACACAATGAGCCTCTGATCAAAATCTC  998
      | ||||||||||||||| ||| ||||| |||||| ||||||| |||||||
seq2  G-TTTAGCAAAAGTAAA-TAT-AACAC-ATGAGCTTCTGATC-AAATCTC  991

seq1  AGATTTTGTGAGAATTACTTTGACTTGAAACATACATGCAAGGAATAGTT  1048
      |||||||||||||  ||| ||||||   ||||||||||||    ||||||
seq2  AGATTTTGTGAGA--TAC-TTGACT--GAACATACATGCA---GATAGTT  1033

seq1  CACAACAATCTTGAAAAAATATTTAAGAATCACAGTAAAAATATCAAGAA  1098
      ||||   ||| ||||||| ||||| |||||| ||||  ||||||| || |
seq2  CACA--CATC-TGAAAAATTATTT-AGAATC-CAGT--AAATATC-AGGA  1075

seq1  TCAATATGTGAGTATT  1114
      ||||| ||||||||||
seq2  TCAAT-TGTGAGTATT  1090