BAC Information

Click to search

BAC

Clone NameB6Ng01-005I11
Chromosome2 (Build37)
Map Location 158,672,144 - 158,841,903
singlet/doubletdoublet
Overlap geneDhx35, LOC100043891
Upstream geneCtnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik
Downstream geneLOC100043689
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005I11.bB6Ng01-005I11.g
ACCDH842641DH842642
length7181,088
definitionDH842641|Mus musculus domesticus DNA, BAC clone: B6Ng01-005I11, 5' end.DH842642|Mus musculus domesticus DNA, BAC clone: B6Ng01-005I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,672,144 - 158,672,861)(158,840,822 - 158,841,903)
sequence
gaattcatctcatggctttgagcgagtgaatggagatgctttattcatga
cagatgtgtttgctataacaataaaaatgtcagttaaaaaggaacagagt
gtttggagaattgcagactatctgacagccagagacagggcagtgtgctt
tcatggtgtgtgtcctagggaaagaaggcatttctacagtgctctgagct
cagcagccatcggtggggcagcttcttgggtccagtcctctgtggcctgg
gattgaagaggtgctagttacagagcagacctgccttgtccttagctact
gctggggaaagatgccccctcagatgtcgggcagacatcagacatgggag
acacagggccgtgttcagagatggtttcaggtgggttgcagaggggcagg
ggagctggcctagatcctatgcatcacagcccagggcctggcatgtggaa
catggggccagtgctgggtctcaccaggcgtctgttgctgccttgtgtag
gtgacccggatccagtcctgaggtgcatcgtgtcggggttctttgcgaat
gcagcccggtttcactccagtggagcctatcggtaaggagactctgaggt
gacttggtgaaggggacagaaagctgccccttgtgcagagatgaaaacca
agcagcttttaacttacattatcatcatgcccgcttccaaagcctggtga
ggccggctgcccagtgct
gaattccctatgactctgtgtgcctaacactgggttgaagatgagattct
aaagttctagtagctaaagtcctaggagatcacaggtcagagaccagcta
tgacaacaaaatgctgtgttggcctgggcacacttggcattcttcatcat
tagaacctctgagaggcttatttaatcattgatttggattcggatcttcc
taggtggctcctatatatcttgtgtaagtactctatgaggttacaaggta
gaatattggcagataccaccctgtaaagttctcccagacatggttgacta
gaacctacaatgaatcctaggcaggaactatctgtcatggacccttgttt
ccacctcccaacaagggaaggagggaaacatatttggcaatttaggataa
tatatttgtatttaatcccgacccaaaatgctgctagattcacaaagatt
tccttgaacataaaagagactgctgtccaggccaaagagatgaccacaga
gtcggggaaacctggaagttggtgagatcctccagatgattcagggacaa
ggcccactgaaaactcacctaccctcatcaacagaagtggctctggcccc
tcggcctctgaaaagtcagctagaaaaatcaaattagcctgagaatactg
tttggagagagatcttcctcctgaaacaagtaaagacggtgtagaactga
agtgcatcaattagggaacagtcagtcccccgagctgctgaaccgtgaaa
gatggtcaggcatactaagagccagcatcaaagtcctggtctgaatgatt
gtgaaacccacataccactgcttaactccctacgcctcagttttcctcac
tgtaaaatagaagtgattatcaatactctctttccagcacagtgttaagg
agattgaagtctgtagttgacaacactgtacacaatgtacgcaatggcct
ccatgatgccacctgcaacatgataattgtgctttaatatgtaaagacgt
tcctaatccacaaattttgacaccctgctttgcactcttcttcaagactg
aagaaaagaatgggatattcttcaagcttcaggaccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_158672144_158672861
seq2: B6Ng01-005I11.b_45_762

seq1  GAATTCATCTCATGGCTTTGAGCGAGTGAATGGAGATGCTTTATTCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCATGGCTTTGAGCGAGTGAATGGAGATGCTTTATTCATGA  50

seq1  CAGATGTGTTTGCTATAACAATAAAAATGTCAGTTAAAAAGGAACAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTGTTTGCTATAACAATAAAAATGTCAGTTAAAAAGGAACAGAGT  100

seq1  GTTTGGAGAATTGCAGACTATCTGACAGCCAGAGACAGGGCAGTGTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGAATTGCAGACTATCTGACAGCCAGAGACAGGGCAGTGTGCTT  150

seq1  TCATGGTGTGTGTCCTAGGGAAAGAAGGCATTTCTACAGTGCTCTGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGTGTGTCCTAGGGAAAGAAGGCATTTCTACAGTGCTCTGAGCT  200

seq1  CAGCAGCCATCGGTGGGGCAGCTTCTTGGGTCCAGTCCTCTGTGGCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCATCGGTGGGGCAGCTTCTTGGGTCCAGTCCTCTGTGGCCTGG  250

seq1  GATTGAAGAGGTGCTAGTTACAGAGCAGACCTGCCTTGTCCTTAGCTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAGAGGTGCTAGTTACAGAGCAGACCTGCCTTGTCCTTAGCTACT  300

seq1  GCTGGGGAAAGATGCCCCCTCAGATGTCGGGCAGACATCAGACATGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGAAAGATGCCCCCTCAGATGTCGGGCAGACATCAGACATGGGAG  350

seq1  ACACAGGGCCGTGTTCAGAGATGGTTTCAGGTGGGTTGCAGAGGGGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGCCGTGTTCAGAGATGGTTTCAGGTGGGTTGCAGAGGGGCAGG  400

seq1  GGAGCTGGCCTAGATCCTATGCATCACAGCCCAGGGCCTGGCATGTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGCCTAGATCCTATGCATCACAGCCCAGGGCCTGGCATGTGGAA  450

seq1  CATGGGGCCAGTGCTGGGTCTCACCAGGCGTCTGTTGCTGCCTTGTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGCCAGTGCTGGGTCTCACCAGGCGTCTGTTGCTGCCTTGTGTAG  500

seq1  GTGACCCGGATCCAGTCCTGAGGTGCATCGTGTCGGGGTTCTTTGCGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCGGATCCAGTCCTGAGGTGCATCGTGTCGGGGTTCTTTGCGAAT  550

seq1  GCAGCCCGGTTTCACTCCAGTGGAGCCTATCGGTAAGGAGACTCTGAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCGGTTTCACTCCAGTGGAGCCTATCGGTAAGGAGACTCTGAGGT  600

seq1  GACTTGGTGAAGGGGACAGAAAGCTGCCCCTTGTGCAGAGATGAAAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGTGAAGGGGACAGAAAGCTGCCCCTTGTGCAGAGATGAAAACCA  650

seq1  AGCAGCTTTTAACTTACATCATCATCATGCCCGCTTCCAAAGCCTGGTGA  700
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGCAGCTTTTAACTTACATTATCATCATGCCCGCTTCCAAAGCCTGGTGA  700

seq1  GGCCGGCTGCCCAGTGCT  718
      ||||||||||||||||||
seq2  GGCCGGCTGCCCAGTGCT  718

seq1: chr2_158840822_158841903
seq2: B6Ng01-005I11.g_69_1156 (reverse)

seq1  AGGGTCCTGAAGCTTGAAG-ACATCACAATCTTTTCTTTCAGTCTTGAAG  49
      ||||||||||||||||||| | ||| || ||||||| |||||||||||||
seq2  AGGGTCCTGAAGCTTGAAGAATATCCCATTCTTTTC-TTCAGTCTTGAAG  49

seq1  AAAGGTGACATGCA-GGTGTCAAAATTTGTGGATTTAGGAACGTCTTTAC  98
      ||  |||  | ||| |||||||||||||||||| ||||||||||||||||
seq2  AAGAGTGCAAAGCAGGGTGTCAAAATTTGTGGA-TTAGGAACGTCTTTAC  98

seq1  ATATTAAAGCACAATTATCATGGTTGCAGGTGGCATCATGGA-GCCATTG  147
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  ATATTAAAGCACAATTATCAT-GTTGCAGGTGGCATCATGGAGGCCATTG  147

seq1  CGTACATTGTGTACAGTG-TGTCAACTACAGACTTCAGTCTCCTTAACAA  196
      |||||||||||||||||| |||||||||||||||||| |||||||||| |
seq2  CGTACATTGTGTACAGTGTTGTCAACTACAGACTTCAATCTCCTTAAC-A  196

seq1  CTGTGCTGGAAGGAGAGTATTGAT-ATCACTTCTATTTTACAGTGAGGAA  245
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  CTGTGCTGGAAAGAGAGTATTGATAATCACTTCTATTTTACAGTGAGGAA  246

seq1  AACTGAGGCGTAGGGAGTTAAGCAGTGGTATGTGGGTTTCACAATCATTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGCGTAGGGAGTTAAGCAGTGGTATGTGGGTTTCACAATCATTC  296

seq1  AGACCAGGACTTTGATGCTGGCTCTTAGTATGCCTGACCATCTTTCACGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGACTTTGATGCTGGCTCTTAGTATGCCTGACCATCTTTCACGG  346

seq1  TTCAGCAGCTCGGGGGACTGACTGTTCCCTAATTGATGCACTTCAGTTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAGCTCGGGGGACTGACTGTTCCCTAATTGATGCACTTCAGTTCT  396

seq1  ACACCGTC-TTACTTG-TTCAGGAGGAAGATCTCTCTCC-AACAGTATTC  442
      |||||||| ||||||| |||||||||||||||||||||| ||||||||||
seq2  ACACCGTCTTTACTTGTTTCAGGAGGAAGATCTCTCTCCAAACAGTATTC  446

seq1  TCAGGCTAATTTGA-TTTTCTAGCTGAC-TTTCAGAGGCCGAGGGGCCAG  490
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  TCAGGCTAATTTGATTTTTCTAGCTGACTTTTCAGAGGCCGAGGGGCCAG  496

seq1  AGCCACTTCTGTTGATGAGGGTAGGTGAGTTTTCAGTGGGCCTTGTCCCT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTTCTGTTGATGAGGGTAGGTGAGTTTTCAGTGGGCCTTGTCCCT  546

seq1  GAATCATCTGGAGGATCTCACCAACTTCCAGGTTTCCCCGACTCTGTGGT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATCTGGAGGATCTCACCAACTTCCAGGTTTCCCCGACTCTGTGGT  596

seq1  CATCTCTTTGGCCTGGACAGCAGTCTCTTTTATGTTCAAGGAAATCTTTG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTTGGCCTGGACAGCAGTCTCTTTTATGTTCAAGGAAATCTTTG  646

seq1  TGAATCTAGCAGCATTTTGGGTCGGGATTAAATACAAATATATTATCCTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTAGCAGCATTTTGGGTCGGGATTAAATACAAATATATTATCCTA  696

seq1  AATTGCCAAATATGTTTCCCTCCTTCCCTTGTTGGGAGGTGGAAACAAGG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCAAATATGTTTCCCTCCTTCCCTTGTTGGGAGGTGGAAACAAGG  746

seq1  GTCCATGACAGATAGTTCCTGCCTAGGATTCATTGTAGGTTCTAGTCAAC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGACAGATAGTTCCTGCCTAGGATTCATTGTAGGTTCTAGTCAAC  796

seq1  CATGTCTGGGAGAACTTTACAGGGTGGTATCTGCCAATATTCTACCTTGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTGGGAGAACTTTACAGGGTGGTATCTGCCAATATTCTACCTTGT  846

seq1  AACCTCATAGAGTACTTACACAAGATATATAGGAGCCACCTAGGAAGATC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCATAGAGTACTTACACAAGATATATAGGAGCCACCTAGGAAGATC  896

seq1  CGAATCCAAATCAATGATTAAATAAGCCTCTCAGAGGTTCTAATGATGAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATCCAAATCAATGATTAAATAAGCCTCTCAGAGGTTCTAATGATGAA  946

seq1  GAATGCCAAGTGTGCCCAGGCCAACACAGCATTTTGTTGTCATAGCTGGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCAAGTGTGCCCAGGCCAACACAGCATTTTGTTGTCATAGCTGGT  996

seq1  CTCTGACCTGTGATCTCCTAGGACTTTAGCTACTAGAACTTTAGAATCTC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCTGTGATCTCCTAGGACTTTAGCTACTAGAACTTTAGAATCTC  1046

seq1  ATCTTCAACCCAGTGTTAGGCACACAGAGTCATAGGGAATTC  1082
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAACCCAGTGTTAGGCACACAGAGTCATAGGGAATTC  1088