BAC Information

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BAC

Clone NameB6Ng01-005K21
Chromosome2 (Build37)X (Build37)
Map Location 142,776,786 - 142,777,698116,191,121 - 116,192,205
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005K21.bB6Ng01-005K21.g
ACCDH842750DH842751
length9501,084
definitionDH842750|Mus musculus domesticus DNA, BAC clone: B6Ng01-005K21, 5' end.DH842751|Mus musculus domesticus DNA, BAC clone: B6Ng01-005K21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,786 - 142,777,698)(116,191,121 - 116,192,205)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctactcaggaatttttcccctgtgcccgtatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaaattccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gcttcagactggtttcatgtagaactcaggactaccagcccagtgataga
accacccacaaaggccttgaaactttcctatcaattactaattaagaaat
gccttataagcttcccaacggattaatcttatagagacattttcttaatt
aaggttccctcctctccaataactttggtttgtgtcaagttgacaagaaa
ctaacaatcacagccaagcacatcattcagcctggaaacctttgtagatc
aaagggtttgtaattgggttgatgcttgtttttatcctttagttgcatga
aaaataccttccagtatcagagttctgggataaatggattcttgggaaag
aaatgtagtcatcagaatggacagcaaatacttttatgagaaaactcatc
ttaccttcctatcttagacaacttataaaaagaaaaaagcaattttccca
catgaattcaataacatttaaaattaaccaatggataattttgtcaactt

gaattccagggattttatttaggtcattagtttcatgtggcaaatacttt
caactgctaagagacatcaacaacctcccaattatttttttaaatctgca
tcagaacatatatgttctactactccctttatcaagcatattcactatag
tctctgagatggtggatttttcctgtcatgttatattgatgtatatccac
atcactgtcataacttattttagcagtatctgttatatatgagtacatac
attataagtctataagtacatacatgtttggaatacataaatatattgta
atttattaaatatatcataagtgtctatgaggctatgtagattattgtga
tacttgtggggctttgttttgttttattttgttttgttttgtatcttgag
atagggtctctatatgaagccctgaatagcctagcacttgctatgtagtt
caggctcccctgaaactcatagaaattcacctgcccctgaaactggaaaa
ctagaattaaagatgtgtgtaaccacaaaagatacttagttttagttgaa
agattgatatggtcaagtttccgcagtgaagaaagtttcatttaaggatt
atttagatcaatccagcccttattcatatctctggagagttgttttaatt
atgttaactgaagtagaaagatatcaccttaaaagtaggtggtattatat
tatataatgcacatgaattacatctatatagattacacacacaataacac
acacacaaagcacacacacacacacacacatacacaaccacacacacaca
cacacacacacactatacaagacaccttttccatcactctagagaacatt
ggctaacataatctgtaaatgaggaatccctgatgatttaacaattcctt
ttgagaatcatgtcttcgtaaataatattgttcatctccactttttcctt
tttgctagtttatgaagaagaacttctggggagggaatatatttcctagc
ctcctcaaaaaacaaaaatctgtgacttttaaaaaaaagtttctagtctg
gaatttcaagtattccaccctatttctcatcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776786_142777698
seq2: B6Ng01-005K21.b_46_498 (reverse)

seq1  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  AATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACC  250
                                                        
seq2  --------------------------------------------------  0

seq1  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  300
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  350
                                                        
seq2  --------------------------------------------------  0

seq1  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  400
                                                        
seq2  --------------------------------------------------  0

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTG  450
                                                        
seq2  --------------------------------------------------  0

seq1  GAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT  500
                ||||||||||||||||||||||||||||||||||||||||
seq2  ----------AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT  40

seq1  CATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  550
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  90

seq1  AAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACT  600
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAATCTAAGTGGATCAAGGAATTTCACATAAAACCAGAGACACTGAAACT  140

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAA  650
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATACGGGCACAGGGGAAA  190

seq1  AATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  700
      |||||||||  |||| ||||||||||||||||||||||||||||||||||
seq2  AATTCCTGAGTAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  240

seq1  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGT  290

seq1  CTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATC  800
      | |||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  CAATAAGACAAAGAGACCACCAACAGATTGGGAAAGGATCTTTACCTATC  340

seq1  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  390

seq1  GTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACT  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACT  440

seq1  GAACAAAGAATTC  913
      |||||||||||||
seq2  GAACAAAGAATTC  453

seq1: chrX_116191121_116192205
seq2: B6Ng01-005K21.g_69_1152

seq1  GAATTCCAGGGATTTTATTTAGGTCATTAGTTTCATGTGGCAAATACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGATTTTATTTAGGTCATTAGTTTCATGTGGCAAATACTTT  50

seq1  CAACTGCTAAGAGACATCAACAACCTCCCAATTATTTTTTTAAATCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCTAAGAGACATCAACAACCTCCCAATTATTTTTTTAAATCTGCA  100

seq1  TCAGAACATATATGTTCTACTACTCCCTTTATCAAGCATATTCACTATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACATATATGTTCTACTACTCCCTTTATCAAGCATATTCACTATAG  150

seq1  TCTCTGAGATGGTGGATTTTTCCTGTCATGTTATATTGATGTATATCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGATGGTGGATTTTTCCTGTCATGTTATATTGATGTATATCCAC  200

seq1  ATCACTGTCATAACTTATTTTAGCAGTATCTGTTATATATGAGTACATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGTCATAACTTATTTTAGCAGTATCTGTTATATATGAGTACATAC  250

seq1  ATTATAAGTCTATAAGTACATACATGTTTGGAATACATAAATATATTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAGTCTATAAGTACATACATGTTTGGAATACATAAATATATTGTA  300

seq1  ATTTATTAAATATATCATAAGTGTCTATGAGGCTATGTAGATTATTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTAAATATATCATAAGTGTCTATGAGGCTATGTAGATTATTGTGA  350

seq1  TACTTGTGGGGCTTTGTTTTGTTTTATTTTGTTTTGTTTTGTATCTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTGGGGCTTTGTTTTGTTTTATTTTGTTTTGTTTTGTATCTTGAG  400

seq1  ATAGGGTCTCTATATGAAGCCCTGAATAGCCTAGCACTTGCTATGTAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTCTCTATATGAAGCCCTGAATAGCCTAGCACTTGCTATGTAGTT  450

seq1  CAGGCTCCCCTGAAACTCATAGAAATTCACCTGCCCCTGAAACTGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCCCTGAAACTCATAGAAATTCACCTGCCCCTGAAACTGGAAAA  500

seq1  CTAGAATTAAAGATGTGTGTAACCACAAAAGATACTTAGTTTTAGTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTAAAGATGTGTGTAACCACAAAAGATACTTAGTTTTAGTTGAA  550

seq1  AGATTGATATGGTCAAGTTTCCGCAGTGAAGAAAGTTTCATTTAAGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGATATGGTCAAGTTTCCGCAGTGAAGAAAGTTTCATTTAAGGATT  600

seq1  ATTTAGATCAATCCAGCCCTTATTCATATCTCTGGAGAGTTGTTTTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGATCAATCCAGCCCTTATTCATATCTCTGGAGAGTTGTTTTAATT  650

seq1  ATGTTAACTGAAGTAGAAAGATATCACCTTAAAAGTAGGTGGTATTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAACTGAAGTAGAAAGATATCACCTTAAAAGTAGGTGGTATTATAT  700

seq1  TATATAATGCACATGAATTACATCTATATAGATTACACACACAATAACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATGCACATGAATTACATCTATATAGATTACACACACAATAACAC  750

seq1  ACACACAAAGCACACACACACACACACACATACACAACCACACACACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAAGCACACACACACACACACACATACACAACCACACACACACA  800

seq1  CACACACACACACTATACAAGACACCTTTTCCATCACTCTAGAGAACATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACTATACAAGACACCTTTTCCATCACTCTAGAGAACATT  850

seq1  GGCTAACATAATCTGTAAATGAGGAATCCCTGATGATTTAACAAATTCCT  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGCTAACATAATCTGTAAATGAGGAATCCCTGATGATTTAAC-AATTCCT  899

seq1  TTTGAGAATCATGTCTTCGTAAATAATATTGTTCAATCTCAACTTTTT-C  949
      |||||||||||||||||||||||||||||||||| ||||| ||||||| |
seq2  TTTGAGAATCATGTCTTCGTAAATAATATTGTTC-ATCTCCACTTTTTCC  948

seq1  TTTTTGCTAGTTTATG-AGAAG-ACTTCTGGGAAGGAAATATA-TTCCTA  996
      |||||||||||||||| ||||| ||||||||| ||| |||||| ||||||
seq2  TTTTTGCTAGTTTATGAAGAAGAACTTCTGGGGAGGGAATATATTTCCTA  998

seq1  GCCTACTCAGAAGAACAAAAA-CTCTGACTTTTAAAAAAAAATGTTTCTA  1045
      |||| |||| || |||||||| || ||||||||||||||||  |||||||
seq2  GCCTCCTCA-AAAAACAAAAATCTGTGACTTTTAAAAAAAA--GTTTCTA  1045

seq1  GTCATGAATTTTCAAGTATCACACTC-ATTTCTCTATCAAT  1085
      ||| || | ||||||||||  ||| | ||||||| ||||||
seq2  GTC-TGGAATTTCAAGTATTCCACCCTATTTCTC-ATCAAT  1084