BAC Information

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BAC

Clone NameB6Ng01-005N12
Chromosome2 (Build37)
Map Location 13,135,294 - 13,245,516
singlet/doubletdoublet
Overlap geneRsu1, Cubn
Upstream geneItga8, 2310047O13Rik, LOC100040837, Pter, C1ql3
Downstream geneTrdmt1, Vim, St8sia6, Ptpla, Stam, 2010003H20Rik, Mrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005N12.bB6Ng01-005N12.g
ACCDH842872DH842873
length1,1311,124
definitionDH842872|Mus musculus domesticus DNA, BAC clone: B6Ng01-005N12, 5' end.DH842873|Mus musculus domesticus DNA, BAC clone: B6Ng01-005N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,244,365 - 13,245,516)(13,135,294 - 13,136,429)
sequence
gaattctcccagctctctgaggcaaatgcgtctgaaagtggccatggccg
ttagagaatgctctccatgaaatgccataccattcatggaaataaggaga
atggctgtatattcaattttagtcggttacattcaatttcctctttattc
ctcctgatttacagacagatagtagaaatactcttccattgatttataag
gtcaggggtgttcttctgacaggataaattgggagcagataaatatgcac
tctccaggaactctgcaaatattaatcatatttccgtgagaagcgattgt
catgaaacctattcaactccgcactgacaggtcttggcctatgtgccaag
tgttctgttcatgttagatgatcaaaggcaaagaagactcttaagcagct
taggcaattatcacctctctcctaagagcatacttatttattatcactgt
cagcattacatttcttcctcctttacaaagcacacagctgaagggagtat
taagttggtttcaactctgcttagatatgtgaaagtatgtatgaagaccc
aagctggaacaaactggcactgataataaaggtgtttctacatccaaaca
acatgtctgagaactctgtccagtgcaattggcaatgattatataggaat
ttttttaaatgcctgctactgtaccaggattgaaataaatcaagaagtgc
tttttcttattgttattatttggtcctgttaatttaagatatttgtccaa
accctgtaaccatgtcacttgctatactgttttgttcaggtaatgctgat
ggacccctaatagagaagttttgcagcctgtcagcaccaagagtgccctt
ggtcatcccctaccctcaagtgtggatacattttgtcagcaatgaacgtg
tagaatatactggattctacgtagagtattctttacagtaagctctgaaa
cataccacatatagatatatagatttacatctaggtatataatggtttca
ttttaatttcatgaaatttcaggttaaatttacagttgtactgataccag
aaaagaatttatggtttttatatattttcttattctggagaacccactat
attcttaggtttaatcttgattccgttcatt
gaattccaagcaagcctctgacttttatttcgctgcgttccttcacatcc
ttggatcagacaagtcagaactcatccagattcctttgtttggctgaaat
tctctcaccaatgaggtttcaaattaccaactctgggtttacttgaaaga
attttcacaaaatcttaggagcacttgcttattccaatatgtaaataaat
agatagatagatagatagatagatagatagatagatagatagatagatag
atacaacttgaaaatacaccctgaagataccacggagacagaggatgagc
tgaatgagaggaggggcttggttcggatggtcatgcgcacaaatagaagc
cattcctactgtggtgctcgcttagtaactcattttgcaaagcccatctc
tggcacattttgcatagtattgcagcctcactcatggaccagcaaagcaa
ctcagagtccagccatgcaactggtctgtctctctgtctcacccttcctt
ctcaccatcttgaaggggtgctatcctttggttccaaatcagaagtacat
gtctaggactcttcttcctgacagatgggtgagtgtctactttcctgacc
actgtccatcacagtgttcaggaaagagggtcaggaggagagaatgacag
gctcaagtacagccactgtgactccagagctgagtccttagggatatgtc
acccctccaccaaaggttttgttcaccactatcatgactgcatgagagac
tgcatggaaaagtacttatcatagtaacctagcatccaaggccttactag
ctgttattatattaccagctagcatgccacccttggcttttaaaataacc
aaactaggtaatgctcaaaaaaggtatttagagtctttcaccttttattt
ttggattattaactaagacttccagacttttcctgtatattttcaattaa
cgtattcacttcaaagtagaaaagactaccaggcagacgtggacactgac
attgtctagtatgagcttgtaaagcagcatcatggaaaggttttggtatt
ttttttaatttctatttcctaaaaattaattaataaattaaattgctcaa
gttggctattggatgcttaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_13244365_13245516
seq2: B6Ng01-005N12.b_47_1177 (reverse)

seq1  AATGAACGAGAATCAAAGTATTAAAACCATAAGAATATAGTGGGGTCTCC  50
      |||||||| |||||||   ||||||  | ||||||||||||||| |||||
seq2  AATGAACG-GAATCAA--GATTAAA--CCTAAGAATATAGTGGGTTCTCC  45

seq1  AGAATAAAGGAAAATATATAAAAAACCATAAAATTCTTTTCTTGGTATCA  100
      |||||||  |||||||||| ||||||||| ||||||||||| ||||||||
seq2  AGAATAA--GAAAATATAT-AAAAACCAT-AAATTCTTTTC-TGGTATCA  90

seq1  GTAACAACTGGTTAAAAATTTAACCTGGAAATTTTCATTGAAATTAAAAA  150
      || |||||||     ||||||||||||  || ||||| ||||||| ||||
seq2  GT-ACAACTG----TAAATTTAACCTG--AAATTTCA-TGAAATT-AAAA  131

seq1  TGAAACCATTATATACCTAGATGTAAATCTATATATCTATATGTGGTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCATTATATACCTAGATGTAAATCTATATATCTATATGTGGTATG  181

seq1  TTTCAGAGCTTACTTGTAAAGGAATACTCTACGTAGAATCCAGTATATTC  250
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  TTTCAGAGCTTAC-TGTAAA-GAATACTCTACGTAGAATCCAGTATATTC  229

seq1  TACACGTTCATTGCTGACAAAATGTATCCACACCTGAGGGTAGGGGATGA  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TACACGTTCATTGCTGACAAAATGTATCCACACTTGAGGGTAGGGGATGA  279

seq1  CCAAGGGCACTCTTGGTGCTGACAGGCTGCAAAACTTCTCTATTAGGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGCACTCTTGGTGCTGACAGGCTGCAAAACTTCTCTATTAGGGGT  329

seq1  CCATCAGCATTACCTGAACAAAACAGTATAGCAAGTGACATGGTTACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGCATTACCTGAACAAAACAGTATAGCAAGTGACATGGTTACAGG  379

seq1  GTTTGGACAAATATCTTAAATTAACAGGACCAAATAATAACAATAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGACAAATATCTTAAATTAACAGGACCAAATAATAACAATAAGAAA  429

seq1  AAGCACTTCTTGATTTATTTCAATCCTGGTACAGTAGCAGGCATTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTCTTGATTTATTTCAATCCTGGTACAGTAGCAGGCATTTAAAA  479

seq1  AAATTCCTATATAATCATTGCCAATTGCACTGGACAGAGTTCTCAGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTATATAATCATTGCCAATTGCACTGGACAGAGTTCTCAGACAT  529

seq1  GTTGTTTGGATGTAGAAACACCTTTATTATCAGTGCCAGTTTGTTCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGGATGTAGAAACACCTTTATTATCAGTGCCAGTTTGTTCCAGC  579

seq1  TTGGGTCTTCATACATACTTTCACATATCTAAGCAGAGTTGAAACCAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCTTCATACATACTTTCACATATCTAAGCAGAGTTGAAACCAACT  629

seq1  TAATACTCCCTTCAGCTGTGTGCTTTGTAAAGGAGGAAGAAATGTAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTCCCTTCAGCTGTGTGCTTTGTAAAGGAGGAAGAAATGTAATGC  679

seq1  TGACAGTGATAATAAATAAGTATGCTCTTAGGAGAGAGGTGATAATTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGATAATAAATAAGTATGCTCTTAGGAGAGAGGTGATAATTGCC  729

seq1  TAAGCTGCTTAAGAGTCTTCTTTGCCTTTGATCATCTAACATGAACAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGCTTAAGAGTCTTCTTTGCCTTTGATCATCTAACATGAACAGAA  779

seq1  CACTTGGCACATAGGCCAAGACCTGTCAGTGCGGAGTTGAATAGGTTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGCACATAGGCCAAGACCTGTCAGTGCGGAGTTGAATAGGTTTCA  829

seq1  TGACAATCGCTTCTCACGGAAATATGATTAATATTTGCAGAGTTCCTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATCGCTTCTCACGGAAATATGATTAATATTTGCAGAGTTCCTGGA  879

seq1  GAGTGCATATTTATCTGCTCCCAATTTATCCTGTCAGAAGAACACCCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCATATTTATCTGCTCCCAATTTATCCTGTCAGAAGAACACCCCTG  929

seq1  ACCTTATAAATCAATGGAAGAGTATTTCTACTATCTGTCTGTAAATCAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATAAATCAATGGAAGAGTATTTCTACTATCTGTCTGTAAATCAGG  979

seq1  AGGAATAAAGAGGAAATTGAATGTAACCGACTAAAATTGAATATACAGCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAAAGAGGAAATTGAATGTAACCGACTAAAATTGAATATACAGCC  1029

seq1  ATTCTCCTTATTTCCATGAATGGTATGGCATTTCATGGAGAGCATTCTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTTATTTCCATGAATGGTATGGCATTTCATGGAGAGCATTCTCT  1079

seq1  AACGGCCATGGCCACTTTCAGACGCATTTGCCTCAGAGAGCTGGGAGAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGCCATGGCCACTTTCAGACGCATTTGCCTCAGAGAGCTGGGAGAAT  1129

seq1  TC  1152
      ||
seq2  TC  1131

seq1: chr2_13135294_13136429
seq2: B6Ng01-005N12.g_67_1190

seq1  GAATTCCAAGCAAGCCTCTGACTTTTATTTCGCTGCGTTCCTTCACATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCAAGCCTCTGACTTTTATTTCGCTGCGTTCCTTCACATCC  50

seq1  TTGGATCAGACAAGTCAGAACTCATCCAGATTCCTTTGTTTGGCTGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCAGACAAGTCAGAACTCATCCAGATTCCTTTGTTTGGCTGAAAT  100

seq1  TCTCTCACCAATGAGGTTTCAAATTACCAACTCTGGGTTTACTTGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACCAATGAGGTTTCAAATTACCAACTCTGGGTTTACTTGAAAGA  150

seq1  ATTTTCACAAAATCTTAGGAGCACTTGCTTATTCCAATATGTAAATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACAAAATCTTAGGAGCACTTGCTTATTCCAATATGTAAATAAAT  200

seq1  AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG  250

seq1  ATACAACTTGAAAATACACCCTGAAGATACCACGGAGACAGAGGATGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACTTGAAAATACACCCTGAAGATACCACGGAGACAGAGGATGAGC  300

seq1  TGAATGAGAGGAGGGGCTTGGTTCGGATGGTCATGCGCACAAATAGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAGAGGAGGGGCTTGGTTCGGATGGTCATGCGCACAAATAGAAGC  350

seq1  CATTCCTACTGTGGTGCTCGCTTAGTAACTCATTTTGCAAAGCCCATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTACTGTGGTGCTCGCTTAGTAACTCATTTTGCAAAGCCCATCTC  400

seq1  TGGCACATTTTGCATAGTATTGCAGCCTCACTCATGGACCAGCAAAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACATTTTGCATAGTATTGCAGCCTCACTCATGGACCAGCAAAGCAA  450

seq1  CTCAGAGTCCAGCCATGCAACTGGTCTGTCTCTCTGTCTCACCCTTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTCCAGCCATGCAACTGGTCTGTCTCTCTGTCTCACCCTTCCTT  500

seq1  CTCACCATCTTGAAGGGGTGCTATCCTTTGGTTCCAAATCAGAAGTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCATCTTGAAGGGGTGCTATCCTTTGGTTCCAAATCAGAAGTACAT  550

seq1  GTCTAGGACTCTTCTTCCTGACAGATGGGTGAGTGTCTACTTTCCTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGACTCTTCTTCCTGACAGATGGGTGAGTGTCTACTTTCCTGACC  600

seq1  ACTGTCCATCACAGTGTTCAGGAAAGAGGGTCAGGAGGAGAGAATGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCATCACAGTGTTCAGGAAAGAGGGTCAGGAGGAGAGAATGACAG  650

seq1  GCTCAAGTACAGCCACTGTGACTCCAGAGCTGAGTCCTTAGGGATATGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGTACAGCCACTGTGACTCCAGAGCTGAGTCCTTAGGGATATGTC  700

seq1  ACCCCTCCACCAAAGG-TTTGTTCACCACTATCATGACTGCATGAGAGAC  749
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACCCCTCCACCAAAGGTTTTGTTCACCACTATCATGACTGCATGAGAGAC  750

seq1  TGCATGGAAAAGTACTTATCATAGTAACCTAGCATCCAAGGCCTTACTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGAAAAGTACTTATCATAGTAACCTAGCATCCAAGGCCTTACTAG  800

seq1  CTGTTATTATATTACCAGCTAGCATGCCACCCTTGGCTTTTAAAATAACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATTATATTACCAGCTAGCATGCCACCCTTGGCTTTTAAAATAACC  850

seq1  AAAACTAGGTAATGCTCAAAAAAGGTAATTTAGAGTC-TTCACCTTT--A  896
       ||||||||||||||||||||||||| |||||||||| |||||||||   
seq2  -AAACTAGGTAATGCTCAAAAAAGGT-ATTTAGAGTCTTTCACCTTTTAT  898

seq1  TTTTGGATTATTAACTAAGACTTCCAAGAC-TTTCCTGTATATTTCAAAT  945
      ||||||||||||||||||||||||| |||| ||||||||||||||  |||
seq2  TTTTGGATTATTAACTAAGACTTCC-AGACTTTTCCTGTATATTTTCAAT  947

seq1  TAACGTATTCACTTCAAAGTAGAAAAAGACTACCAGGCAGACGTGGACAC  995
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAACGTATTCACTTCAAAGTAG-AAAAGACTACCAGGCAGACGTGGACAC  996

seq1  TGACATTGTCTAGGTATGAGCTTGTAAAAGCAGCATCATGGAAAAAGGTT  1045
      |||||||||||| |||||||||||| ||||||||||||||||||   | |
seq2  TGACATTGTCTA-GTATGAGCTTGT-AAAGCAGCATCATGGAAA---GGT  1041

seq1  TTTGGTATTTTTTTTAAATTCTA-TTCCTAAAAAAATTAAATTAAATTAA  1094
      ||||||||||||||||| ||||| ||||||||||   | ||||||  |||
seq2  TTTGGTATTTTTTTTAATTTCTATTTCCTAAAAA---TTAATTAA--TAA  1086

seq1  ATTTAAAAATTGCACAAGTT-GCTATTGGATAGCTTAAAGAAA  1136
      |||   ||||||| |||||| |||||||||| |||| ||||||
seq2  ATT---AAATTGCTCAAGTTGGCTATTGGAT-GCTT-AAGAAA  1124