BAC Information

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BAC

Clone NameB6Ng01-006A01
Chromosome2 (Build37)
Map Location 153,681,646 - 153,813,335
singlet/doubletdoublet
Overlap geneSpag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477
Upstream geneTpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869
Downstream genePsp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006A01.bB6Ng01-006A01.g
ACCDH842980DH842981
length1,074622
definitionDH842980|Mus musculus domesticus DNA, BAC clone: B6Ng01-006A01, 5' end.DH842981|Mus musculus domesticus DNA, BAC clone: B6Ng01-006A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,812,243 - 153,813,335)(153,681,646 - 153,682,265)
sequence
gaattccctccactcccttctgccactgcagtaagctactttgcatcact
gaggccaaacgcccaaaagaatcagcagaaagtgggtgttttggtctcag
tgtttcagagacaccgcagttcatctgctggggaaggcagatcagtggga
tgtacctgctcatgtcatggcagagcaggaaactgaggcagctggagctc
aaggaccttctaaggcctgcttctagtaacagatgtcagccaggcaggct
ctaccacttaaaggccccaccgcatcccaaaataacggcagcgctcaatg
catgagcctacagaggacagttcagattcaaaccataacatgcccatttt
gctcaccctgggaaattgatagtcaacttggtctgaaatttaatttcgaa
atcagatgaggcaaggaccttccatgacagctggacaatgtcgaagcggg
tgacattgagcctgcacaagaagagtgaggtgaagtacaaaagccaattt
ccaggtctcctcagccccctactcaggctgcagtggcttcccttccccca
tcccatgcctgtcctttctgtccttgctgtttattctgagtcccatttct
ataaatcccaaattggaaaagcatcagtcagaaactgatgtttgtttttt
gattataatggtgagagaaaacacaaatgccatactgaaaacctcagctg
acaactgtgggattagcttggaacgaagggttcttttactcactggggga
cggatactaacttagggataattggtcagagcatctgtgatatgctttcc
tgatgtgacttaccatatatcaaggctcagacaaaccttcataaacgcaa
aggttagactgtgttagagaaacactagcaaggactgactttggaagaga
agtggtgacctctttctaaactttctaagaacagtcagaccaatgtcttt
cagtacctagaccttctctgaccatgcttaaggagttgtcttgatgctta
aaaaaaaaaaaaagaaaaggtcaactcacggctgtcagttccgaatcatg
gtcttcaagatcattcatgccaga
gaattcccataagtcaccggattactctgagcggtcactgtcctcctatg
tagaaaggggacaactagggctgctgttataaggatgcccgggtgcctgg
caggcaatcaatgacccatggtggtgatcccaagccagacttccctactt
catcatggctcaaagacacccagacttgactggaaccaaggaatgcactc
tacgctctaggacaagggctctaggtgtgagtctttgggagggccatgga
gtcgtgtacgtgcacactcagacttggcttggactgaataatatacttta
ctctaggataggggctctaggtgtgagtctttgggaggggttacagagcc
gtgcacacgcacacggtacatgcaggtgaagcgagggttcccccagttgc
tggagatcttcaccttgactgcagcaaagctcctgggtggcaggtttctg
gaacagagccagagtgtagcagctcccccacaggcctctgctctgctcag
cagaggggccttgggggaagggaccttccccattttcgcaggtgtgagaa
tggagtcctagagaggggaacagcccaccccaaggccacgcagccactca
ttatttggggtggggatggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_153812243_153813335
seq2: B6Ng01-006A01.b_28_1101 (reverse)

seq1  TCTGGCATGAATGATGCTCTGAAGACCATGAATTCTGGGGAACTCGACAG  50
      ||||||||||||||| || ||||||||||| ||||   |||||| |||||
seq2  TCTGGCATGAATGAT-CT-TGAAGACCATG-ATTC---GGAACT-GACAG  43

seq1  CCGGTGAGTTTGACCTTTTCTTTTTTTTTTTTTTTTAAGCATCAAGACAA  100
      || ||||| |||||||||||  ||||||||||||||||||||||||||||
seq2  CC-GTGAG-TTGACCTTTTC--TTTTTTTTTTTTTTAAGCATCAAGACAA  89

seq1  CTCCCTAAAGCATTGGTCAGAGAAGGTTCTAGGTACCTGAAAGACATTGG  150
      || ||| ||||| ||||||||||||| |||||||| ||||||||||||||
seq2  CT-CCTTAAGCA-TGGTCAGAGAAGG-TCTAGGTA-CTGAAAGACATTGG  135

seq1  TCTGACTTGTTCTTTAGAAAGTTTAGAAAGAGGTCACCACTTCCTCTTCC  200
      |||||| ||||| ||||||||||||||||||||||||||||| |||||||
seq2  TCTGAC-TGTTC-TTAGAAAGTTTAGAAAGAGGTCACCACTT-CTCTTCC  182

seq1  AAAGTCAGTCCTTGCCTAGTGTTTCTCTAACACAGTCTAACCTTTGCGTT  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGTCCTTG-CTAGTGTTTCTCTAACACAGTCTAACCTTTGCGTT  231

seq1  TATGAAGGTTTGTCTGAGCCTTGATATATGGTAAGTCACATCAGGAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGGTTTGTCTGAGCCTTGATATATGGTAAGTCACATCAGGAAAGC  281

seq1  ATATCACAGATGCTCTGACCAATTATCCCTAAGTTAGTATCCGTCCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACAGATGCTCTGACCAATTATCCCTAAGTTAGTATCCGTCCCCCA  331

seq1  GTGAGTAAAAGAACCCTTCGTTCCAAGCTAATCCCACAGTTGTCAGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTAAAAGAACCCTTCGTTCCAAGCTAATCCCACAGTTGTCAGCTGA  381

seq1  GGTTTTCAGTATGGCATTTGTGTTTTCTCTCACCATTATAATCAAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCAGTATGGCATTTGTGTTTTCTCTCACCATTATAATCAAAAAAC  431

seq1  AAACATCAGTTTCTGACTGATGCTTTTCCAATTTGGGATTTATAGAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCAGTTTCTGACTGATGCTTTTCCAATTTGGGATTTATAGAAATG  481

seq1  GGACTCAGAATAAACAGCAAGGACAGAAAGGACAGGCATGGGATGGGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAGAATAAACAGCAAGGACAGAAAGGACAGGCATGGGATGGGGGA  531

seq1  AGGGAAGCCACTGCAGCCTGAGTAGGGGGCTGAGGAGACCTGGAAATTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGCCACTGCAGCCTGAGTAGGGGGCTGAGGAGACCTGGAAATTGG  581

seq1  CTTTTGTACTTCACCTCACTCTTCTTGTGCAGGCTCAATGTCACCCGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTACTTCACCTCACTCTTCTTGTGCAGGCTCAATGTCACCCGCTT  631

seq1  CGACATTGTCCAGCTGTCATGGAAGGTCCTTGCCTCATCTGATTTCGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACATTGTCCAGCTGTCATGGAAGGTCCTTGCCTCATCTGATTTCGAAA  681

seq1  TTAAATTTCAGACCAAGTTGACTATCAATTTCCCAGGGTGAGCAAAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTCAGACCAAGTTGACTATCAATTTCCCAGGGTGAGCAAAATGG  731

seq1  GCATGTTATGGTTTGAATCTGAACTGTCCTCTGTAGGCTCATGCATTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTATGGTTTGAATCTGAACTGTCCTCTGTAGGCTCATGCATTGAG  781

seq1  CGCTGCCGTTATTTTGGGATGCGGTGGGGCCTTTAAGTGGTAGAGCCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCCGTTATTTTGGGATGCGGTGGGGCCTTTAAGTGGTAGAGCCTGC  831

seq1  CTGGCTGACATCTGTTACTAGAAGCAGGCCTTAGAAGGTCCTTGAGCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGACATCTGTTACTAGAAGCAGGCCTTAGAAGGTCCTTGAGCTCC  881

seq1  AGCTGCCTCAGTTTCCTGCTCTGCCATGACATGAGCAGGTACATCCCACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCTCAGTTTCCTGCTCTGCCATGACATGAGCAGGTACATCCCACT  931

seq1  GATCTGCCTTCCCCAGCAGATGAACTGCGGTGTCTCTGAAACACTGAGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCCTTCCCCAGCAGATGAACTGCGGTGTCTCTGAAACACTGAGAC  981

seq1  CAAAACACCCACTTTCTGCTGATTCTTTTGGGCGTTTGGCCTCAGTGATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACCCACTTTCTGCTGATTCTTTTGGGCGTTTGGCCTCAGTGATG  1031

seq1  CAAAGTAGCTTACTGCAGTGGCAGAAGGGAGTGGAGGGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAGCTTACTGCAGTGGCAGAAGGGAGTGGAGGGAATTC  1074

seq1: chr2_153681646_153682265
seq2: B6Ng01-006A01.g_67_688

seq1  GAATTCCCATAAGTCACCGGATTACTCTGAGCGGTCACTGTCCTCCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATAAGTCACCGGATTACTCTGAGCGGTCACTGTCCTCCTATG  50

seq1  TAGAAAGGGGACAACTAGGGCTGCTGTTATAAGGATGCCCGGGTGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGGGACAACTAGGGCTGCTGTTATAAGGATGCCCGGGTGCCTGG  100

seq1  CAGGCAATCAATGACCCATGGTGGTGATCCCAAGCCAGACTTCCCTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAATCAATGACCCATGGTGGTGATCCCAAGCCAGACTTCCCTACTT  150

seq1  CATCATGGCTCAAAGACACCCAGACTTGACTGGAACCAAGGAATGCACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGGCTCAAAGACACCCAGACTTGACTGGAACCAAGGAATGCACTC  200

seq1  TACGCTCTAGGACAAGGGCTCTAGGTGTGAGTCTTTGGGAGGGCCATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCTCTAGGACAAGGGCTCTAGGTGTGAGTCTTTGGGAGGGCCATGGA  250

seq1  GTCGTGTACGTGCACACTCAGACTTGGCTTGGACTGAATAATATACTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGTACGTGCACACTCAGACTTGGCTTGGACTGAATAATATACTTTA  300

seq1  CTCTAGGATAGGGGCTCTAGGTGTGAGTCTTTGGGAGGGGTTACAGAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGATAGGGGCTCTAGGTGTGAGTCTTTGGGAGGGGTTACAGAGCC  350

seq1  GTGCACACGCACACGGTACATGCAGGTGAAGCGAGGGTTCCCCCAGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACGCACACGGTACATGCAGGTGAAGCGAGGGTTCCCCCAGTTGC  400

seq1  TGGAGATCTTCACCTTGACTGCAGCAAAGCTCCTGGGTGGCAGG-TTCTG  449
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGAGATCTTCACCTTGACTGCAGCAAAGCTCCTGGGTGGCAGGTTTCTG  450

seq1  GAACAGAGCCAGAGTGTAGCAGCTCCCCCACAGGCCTCTGCTCTGCTCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGCCAGAGTGTAGCAGCTCCCCCACAGGCCTCTGCTCTGCTCAG  500

seq1  CAGAGGGGCCTTGGGGGAAGGGACCTTCCCCA-TTTCGCAGGTGTGAGAA  548
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGAGGGGCCTTGGGGGAAGGGACCTTCCCCATTTTCGCAGGTGTGAGAA  550

seq1  TGGAGTCCTAGAGAGGGGAACAGCCCACCCCAAGGCCACGCAGCCACTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCCTAGAGAGGGGAACAGCCCACCCCAAGGCCACGCAGCCACTCA  600

seq1  GTATTTGGGGTGGGGATGGAAG  620
       |||||||||||||||||||||
seq2  TTATTTGGGGTGGGGATGGAAG  622